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PDB: 34568 results

3VIH
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BU of 3vih by Molmil
Crystal structure of beta-glucosidase from termite Neotermes koshunensis in complex with glycerol
Descriptor: Beta-glucosidase, CHLORIDE ION, GLYCEROL, ...
Authors:Jeng, W.Y, Liu, C.I, Wang, A.H.J.
Deposit date:2011-10-03
Release date:2012-07-04
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.03 Å)
Cite:High-resolution structures of Neotermes koshunensis beta-glucosidase mutants provide insights into the catalytic mechanism and the synthesis of glucoconjugates
Acta Crystallogr.,Sect.D, 68, 2012
2M0Y
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BU of 2m0y by Molmil
Solution structure of the SH3 domain of DOCK180
Descriptor: Dedicator of cytokinesis protein 1
Authors:Liu, X, Wen, W.
Deposit date:2012-11-08
Release date:2012-12-19
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Solution structure of the SH3 domain of DOCK180.
Proteins, 81, 2013
2MCV
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BU of 2mcv by Molmil
Solid-state NMR structure of piscidin 1 in aligned 1:1 phosphatidylethanolamine/phosphoglycerol lipid bilayers
Descriptor: Moronecidin
Authors:Fu, R, Tian, Y, Perrin Jr, B.S, Grant, C.V, Hayden, R.M, Pastor, R.W, Cotten, M.L.
Deposit date:2013-08-27
Release date:2014-01-22
Last modified:2014-03-19
Method:SOLID-STATE NMR
Cite:High-resolution structures and orientations of antimicrobial peptides piscidin 1 and piscidin 3 in fluid bilayers reveal tilting, kinking, and bilayer immersion.
J.Am.Chem.Soc., 136, 2014
6OEJ
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BU of 6oej by Molmil
CRYSTAL STRUCTURE OF THE NON-NEUTRALIZING AND ADCC-POTENT ANTIBODY C11 IN COMPLEX WITH HIV-1 CLADE A/E GP120
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, C11 Fab heavy chain, C11 Fab light chain, ...
Authors:Tolbert, W.D, Pazgier, M.
Deposit date:2019-03-27
Release date:2020-07-15
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (3.45 Å)
Cite:Recognition Patterns of the C1/C2 Epitopes Involved in Fc-Mediated Response in HIV-1 Natural Infection and the RV114 Vaccine Trial.
Mbio, 11, 2020
6LTU
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BU of 6ltu by Molmil
Crystal structure of Cas12i2 ternary complex with double Mg2+ bound in catalytic pocket
Descriptor: 1,2-ETHANEDIOL, Cas12i2, DNA (35-MER), ...
Authors:Huang, X, Sun, W, Cheng, Z, Chen, M, Li, X, Wang, J, Sheng, G, Gong, W, Wang, Y.
Deposit date:2020-01-23
Release date:2020-10-28
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.57 Å)
Cite:Structural basis for two metal-ion catalysis of DNA cleavage by Cas12i2.
Nat Commun, 11, 2020
7YMI
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BU of 7ymi by Molmil
PSII-Pcb Dimer of Acaryochloris Marina
Descriptor: (1R,2S)-4-{(1E,3E,5E,7E,9E,11E,13E,15E,17E)-18-[(4S)-4-hydroxy-2,6,6-trimethylcyclohex-1-en-1-yl]-3,7,12,16-tetramethyloctadeca-1,3,5,7,9,11,13,15,17-nonaen-1-yl}-2,5,5-trimethylcyclohex-3-en-1-ol, (6'R,11cis,11'cis,13cis,15cis)-4',5'-didehydro-5',6'-dihydro-beta,beta-carotene, 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL, ...
Authors:Shen, L.L, Gao, Y.Z, Wang, W.D, Zhang, X, Shen, J.R, Wang, P.Y, Han, G.Y.
Deposit date:2022-07-28
Release date:2023-08-16
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Structure of a large photosystem II supercomplex from Acaryochloris marina.
To Be Published
7YMM
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BU of 7ymm by Molmil
PSII-Pcb Tetramer of Acaryochloris Marina
Descriptor: (1R,2S)-4-{(1E,3E,5E,7E,9E,11E,13E,15E,17E)-18-[(4S)-4-hydroxy-2,6,6-trimethylcyclohex-1-en-1-yl]-3,7,12,16-tetramethyloctadeca-1,3,5,7,9,11,13,15,17-nonaen-1-yl}-2,5,5-trimethylcyclohex-3-en-1-ol, (6'R,11cis,11'cis,13cis,15cis)-4',5'-didehydro-5',6'-dihydro-beta,beta-carotene, 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL, ...
Authors:Shen, L.L, Gao, Y.Z, Wang, W.D, Zhang, X, Shen, J.R, Wang, P.Y, Han, G.Y.
Deposit date:2022-07-28
Release date:2023-08-16
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Structure of a large photosystem II supercomplex from Acaryochloris marina.
To Be Published
7ADZ
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BU of 7adz by Molmil
Cryo-EM structure of an extracellular contractile injection system in marine bacterium Algoriphagus machipongonensis, the cap portion in extended state.
Descriptor: Phage tail protein, Putative phage tail sheath protein FI, cap adaptor protein (Algo2), ...
Authors:Xu, J, Ericson, C, Feldmueller, M, Lien, Y.W, Pilhofer, M.
Deposit date:2020-09-17
Release date:2022-02-16
Last modified:2024-07-10
Method:ELECTRON MICROSCOPY (2.5 Å)
Cite:Identification and structure of an extracellular contractile injection system from the marine bacterium Algoriphagus machipongonensis.
Nat Microbiol, 7, 2022
1A7E
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BU of 1a7e by Molmil
HYDROXOMET MYOHEMERYTHRIN FROM THEMISTE ZOSTERICOLA
Descriptor: CHLORIDE ION, HYDROXY DIIRON-OXO MOIETY, MYOHEMERYTHRIN
Authors:Martins, L.J, Hill, C.P, Ellis Junior, W.R.
Deposit date:1998-03-12
Release date:1998-10-14
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structures of wild-type chloromet and L103N hydroxomet Themiste zostericola myohemerythrins at 1.8 A resolution.
Biochemistry, 36, 1997
7AE0
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BU of 7ae0 by Molmil
Cryo-EM structure of an extracellular contractile injection system in marine bacterium Algoriphagus machipongonensis, the sheath-tube module in extended state.
Descriptor: Phage tail protein, Putative phage tail sheath protein FI
Authors:Xu, J, Ericson, C, Feldmueller, M, Lien, Y.W, Pilhofer, M.
Deposit date:2020-09-17
Release date:2022-02-16
Last modified:2024-07-10
Method:ELECTRON MICROSCOPY (2.4 Å)
Cite:Identification and structure of an extracellular contractile injection system from the marine bacterium Algoriphagus machipongonensis.
Nat Microbiol, 7, 2022
7YSN
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BU of 7ysn by Molmil
Tubulin heterodimer structure of GMPCPP state in solution
Descriptor: GUANOSINE-5'-TRIPHOSPHATE, PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER, Tubulin alpha-1B chain, ...
Authors:Zhou, J, Wang, H.-W.
Deposit date:2022-08-12
Release date:2023-10-18
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:Structural insights into the mechanism of GTP initiation of microtubule assembly.
Nat Commun, 14, 2023
7YSP
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BU of 7ysp by Molmil
Tubulin heterodimer structure of GDP-2 state in solution
Descriptor: GUANOSINE-5'-DIPHOSPHATE, GUANOSINE-5'-TRIPHOSPHATE, Tubulin alpha-1B chain, ...
Authors:Zhou, J, Wang, H.-W.
Deposit date:2022-08-12
Release date:2023-10-18
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:Structural insights into the mechanism of GTP initiation of microtubule assembly.
Nat Commun, 14, 2023
7YSQ
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BU of 7ysq by Molmil
GTPgammaS Tube decorated with kinesin
Descriptor: 5'-GUANOSINE-DIPHOSPHATE-MONOTHIOPHOSPHATE, GUANOSINE-5'-TRIPHOSPHATE, Tubulin alpha chain, ...
Authors:Zhou, J, Wang, H.-W.
Deposit date:2022-08-12
Release date:2023-10-18
Method:ELECTRON MICROSCOPY (6.8 Å)
Cite:Structural insights into the mechanism of GTP initiation of microtubule assembly.
Nat Commun, 14, 2023
7YSO
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BU of 7yso by Molmil
Tubulin heterodimer structure of GDP-1 state in solution
Descriptor: GUANOSINE-5'-DIPHOSPHATE, GUANOSINE-5'-TRIPHOSPHATE, Tubulin alpha-1B chain, ...
Authors:Zhou, J, Wang, H.-W.
Deposit date:2022-08-12
Release date:2023-10-18
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Structural insights into the mechanism of GTP initiation of microtubule assembly.
Nat Commun, 14, 2023
7YSR
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BU of 7ysr by Molmil
GTPgammaS MT decorated with kinesin
Descriptor: 5'-GUANOSINE-DIPHOSPHATE-MONOTHIOPHOSPHATE, GUANOSINE-5'-TRIPHOSPHATE, Tubulin alpha chain, ...
Authors:Zhou, J, Wang, H.-W.
Deposit date:2022-08-12
Release date:2023-10-18
Method:ELECTRON MICROSCOPY (4.3 Å)
Cite:Structural insights into the mechanism of GTP initiation of microtubule assembly.
Nat Commun, 14, 2023
6LXD
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BU of 6lxd by Molmil
Pri-miRNA bound DROSHA-DGCR8 complex
Descriptor: Microprocessor complex subunit DGCR8, RNA (102-mer), Ribonuclease 3, ...
Authors:Jin, W, Wang, J, Liu, C.P, Wang, H.W, Xu, R.M.
Deposit date:2020-02-10
Release date:2020-04-15
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:Structural Basis for pri-miRNA Recognition by Drosha.
Mol.Cell, 78, 2020
6OO2
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BU of 6oo2 by Molmil
Vps4 with Cyclic Peptide Bound in the Central Pore
Descriptor: ADENOSINE-5'-DIPHOSPHATE, BERYLLIUM TRIFLUORIDE ION, Designed Cyclic Peptide, ...
Authors:Han, H, Fulcher, J.M, Dandey, V.P, Sundquist, W.I, Kay, M.S, Shen, P, Hill, C.P.
Deposit date:2019-04-22
Release date:2019-08-21
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (4.4 Å)
Cite:Structure of Vps4 with circular peptides and implications for translocation of two polypeptide chains by AAA+ ATPases.
Elife, 8, 2019
2IDO
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BU of 2ido by Molmil
Structure of the E. coli Pol III epsilon-Hot proofreading complex
Descriptor: 1,2-ETHANEDIOL, DNA polymerase III epsilon subunit, Hot protein, ...
Authors:Kirby, T.W, Harvey, S, DeRose, E.F, Chalov, S, Chikova, A.K, Perrino, F.W, Schaaper, R.M, London, R.E, Pedersen, L.C.
Deposit date:2006-09-15
Release date:2006-11-14
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structure of the Escherichia coli DNA polymerase III epsilon-HOT proofreading complex.
J.Biol.Chem., 281, 2006
7DUR
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BU of 7dur by Molmil
Cryo-EM structure of the compound 2-bound human GLP-1 receptor-Gs complex
Descriptor: CHOLESTEROL, Glucagon-like peptide 1 receptor, Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, ...
Authors:Cong, Z, Chen, L, Ma, H, Zhou, Q, Zou, X, Ye, C, Dai, A, Liu, Q, Huang, W, Sun, X, Wang, X, Xu, P, Zhao, L, Xia, T, Zhong, W, Yang, D, Xu, H.E, Zhang, Y, Wang, M.
Deposit date:2021-01-11
Release date:2021-08-11
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Molecular insights into ago-allosteric modulation of the human glucagon-like peptide-1 receptor.
Nat Commun, 12, 2021
2RG7
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BU of 2rg7 by Molmil
Apo- Crystal Structure of a Periplasmic Heme Binding Protein from Shigella dysenteriae
Descriptor: Periplasmic HEME binding protein
Authors:Ho, W.W, Li, H.
Deposit date:2007-10-02
Release date:2007-10-09
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Holo- and apo-bound structures of bacterial periplasmic heme-binding proteins.
J.Biol.Chem., 282, 2007
4WYU
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BU of 4wyu by Molmil
Crystal Structure of Scribble PDZ34 tandem in complex with its target peptide
Descriptor: IODIDE ION, Protein scribble homolog, peptide SER-TRP-PHE-GLN-THR-ASP-LEU
Authors:Ren, J.Q, Pei, H.H, Feng, W.
Deposit date:2014-11-18
Release date:2015-10-21
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Interdomain interface-mediated target recognition by the Scribble PDZ34 supramodule.
Biochem.J., 468, 2015
8HP3
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BU of 8hp3 by Molmil
Crystal structure of meso-diaminopimelate dehydrogenase from Prevotella timonensis
Descriptor: 1,2-ETHANEDIOL, Meso-diaminopimelate D-dehydrogenase, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, ...
Authors:Tan, Y, Song, W.
Deposit date:2022-12-11
Release date:2023-12-13
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (3.07 Å)
Cite:Rational Design of Meso -Diaminopimelate Dehydrogenase with Enhanced Reductive Amination Activity for Efficient Production of d- p -Hydroxyphenylglycine.
Appl.Environ.Microbiol., 89, 2023
6ZXP
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BU of 6zxp by Molmil
Solution structure of the C-terminal domain of the vaccinia virus DNA polymerase processivity factor component A20 fused to a short peptide from the viral DNA polymerase E9.
Descriptor: DNA polymerase processivity factor component A20,DNA polymerase processivity factor component E9
Authors:Bersch, B, Tarbouriech, N, Burmeister, W, Iseni, F.
Deposit date:2020-07-30
Release date:2021-05-19
Last modified:2024-06-19
Method:SOLUTION NMR
Cite:Solution Structure of the C-terminal Domain of A20, the Missing Brick for the Characterization of the Interface between Vaccinia Virus DNA Polymerase and its Processivity Factor.
J.Mol.Biol., 433, 2021
6ZYC
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BU of 6zyc by Molmil
Solution structure of the C-terminal domain of the vaccinia virus DNA polymerase processivity factor component A20.
Descriptor: DNA polymerase processivity factor component A20
Authors:Bersch, B, Iseni, F, Burmeister, W, Tarbouriech, N.
Deposit date:2020-07-31
Release date:2021-05-19
Last modified:2024-06-19
Method:SOLUTION NMR
Cite:Solution Structure of the C-terminal Domain of A20, the Missing Brick for the Characterization of the Interface between Vaccinia Virus DNA Polymerase and its Processivity Factor.
J.Mol.Biol., 433, 2021
8CIE
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BU of 8cie by Molmil
Crystal structure of the human CDKL5 kinase domain with compound YL-354
Descriptor: 4-[[3,5-bis(fluoranyl)phenyl]carbonylamino]-~{N}-piperidin-4-yl-1~{H}-pyrazole-3-carboxamide, Cyclin-dependent kinase-like 5, SULFATE ION
Authors:Richardson, W, Chen, X, Newman, J.A, Bakshi, S, Lakshminarayana, B, Brooke, L, Bullock, A.N.
Deposit date:2023-02-09
Release date:2023-06-14
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Discovery of a Potent and Selective CDKL5/GSK3 Chemical Probe That Is Neuroprotective.
Acs Chem Neurosci, 14, 2023

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