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PDB: 45 results

6ENH
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BU of 6enh by Molmil
Crystal structure of the 43K ATPase domain of Thermus thermophilus gyrase B in complex with an aminocoumarin
Descriptor: Coumermycin A1, DNA gyrase subunit B, IMIDAZOLE
Authors:Vanden Broeck, A, McEwen, A.G, Lamour, V.
Deposit date:2017-10-04
Release date:2019-04-10
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.94 Å)
Cite:Structural Basis for DNA Gyrase Interaction with Coumermycin A1.
J.Med.Chem., 62, 2019
6ENG
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BU of 6eng by Molmil
Crystal structure of the 43K ATPase domain of Escherichia coli gyrase B in complex with an aminocoumarin
Descriptor: CHLORIDE ION, Coumermycin A1, DNA gyrase subunit B, ...
Authors:Vanden Broeck, A, McEwen, A.G, Lamour, V.
Deposit date:2017-10-04
Release date:2019-04-10
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural Basis for DNA Gyrase Interaction with Coumermycin A1.
J.Med.Chem., 62, 2019
6ZY7
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BU of 6zy7 by Molmil
Cryo-EM structure of the entire Human topoisomerase II alpha in State 1
Descriptor: (5S,5aR,8aR,9R)-9-(4-hydroxy-3,5-dimethoxyphenyl)-8-oxo-5,5a,6,8,8a,9-hexahydrofuro[3',4':6,7]naphtho[2,3-d][1,3]dioxol -5-yl 4,6-O-[(1R)-ethylidene]-beta-D-glucopyranoside, DNA (5'-D(*CP*GP*CP*GP*CP*AP*TP*CP*GP*TP*CP*AP*TP*CP*CP*TP*C)-3'), DNA (5'-D(*GP*AP*GP*GP*AP*TP*GP*AP*CP*GP*AP*TP*G)-3'), ...
Authors:Vanden Broeck, A, Lamour, V.
Deposit date:2020-07-30
Release date:2021-05-26
Last modified:2024-05-01
Method:ELECTRON MICROSCOPY (4.64 Å)
Cite:Structural basis for allosteric regulation of Human Topoisomerase II alpha.
Nat Commun, 12, 2021
6ZY6
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BU of 6zy6 by Molmil
Cryo-EM structure of the Human topoisomerase II alpha DNA-binding/cleavage domain in State 2
Descriptor: (5S,5aR,8aR,9R)-9-(4-hydroxy-3,5-dimethoxyphenyl)-8-oxo-5,5a,6,8,8a,9-hexahydrofuro[3',4':6,7]naphtho[2,3-d][1,3]dioxol -5-yl 4,6-O-[(1R)-ethylidene]-beta-D-glucopyranoside, DNA (5'-D(*CP*GP*CP*GP*CP*AP*TP*CP*GP*TP*CP*AP*TP*CP*CP*TP*C)-3'), DNA (5'-D(*GP*AP*GP*GP*AP*TP*GP*AP*CP*GP*AP*TP*G)-3'), ...
Authors:Vanden Broeck, A, Lamour, V.
Deposit date:2020-07-30
Release date:2021-05-26
Last modified:2024-05-01
Method:ELECTRON MICROSCOPY (4.1 Å)
Cite:Structural basis for allosteric regulation of Human Topoisomerase II alpha.
Nat Commun, 12, 2021
6ZY5
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BU of 6zy5 by Molmil
Cryo-EM structure of the Human topoisomerase II alpha DNA-binding/cleavage domain in State 1
Descriptor: (5S,5aR,8aR,9R)-9-(4-hydroxy-3,5-dimethoxyphenyl)-8-oxo-5,5a,6,8,8a,9-hexahydrofuro[3',4':6,7]naphtho[2,3-d][1,3]dioxol -5-yl 4,6-O-[(1R)-ethylidene]-beta-D-glucopyranoside, DNA (5'-D(*CP*GP*CP*GP*CP*AP*TP*CP*GP*TP*CP*AP*TP*CP*CP*TP*C)-3'), DNA (5'-D(*GP*AP*GP*GP*AP*TP*GP*AP*CP*GP*AP*TP*G)-3'), ...
Authors:Vanden Broeck, A, Lamour, V.
Deposit date:2020-07-30
Release date:2021-05-26
Last modified:2024-05-01
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Structural basis for allosteric regulation of Human Topoisomerase II alpha.
Nat Commun, 12, 2021
6ZY8
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BU of 6zy8 by Molmil
Cryo-EM structure of the entire Human topoisomerase II alpha in State 2
Descriptor: (5S,5aR,8aR,9R)-9-(4-hydroxy-3,5-dimethoxyphenyl)-8-oxo-5,5a,6,8,8a,9-hexahydrofuro[3',4':6,7]naphtho[2,3-d][1,3]dioxol -5-yl 4,6-O-[(1R)-ethylidene]-beta-D-glucopyranoside, DNA (5'-D(*CP*GP*CP*GP*CP*AP*TP*CP*GP*TP*CP*AP*TP*CP*CP*TP*C)-3'), DNA (5'-D(*GP*AP*GP*GP*AP*TP*GP*AP*CP*GP*AP*TP*G)-3'), ...
Authors:Vanden Broeck, A, Lamour, V.
Deposit date:2020-07-30
Release date:2021-05-26
Last modified:2024-05-01
Method:ELECTRON MICROSCOPY (7.4 Å)
Cite:Structural basis for allosteric regulation of Human Topoisomerase II alpha.
Nat Commun, 12, 2021
7MQ9
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BU of 7mq9 by Molmil
Cryo-EM structure of the human SSU processome, state pre-A1*
Descriptor: 18S rRNA, 40S ribosomal protein S11, 40S ribosomal protein S12, ...
Authors:Vanden Broeck, A, Singh, S, Klinge, S.
Deposit date:2021-05-05
Release date:2021-09-22
Last modified:2024-05-29
Method:ELECTRON MICROSCOPY (3.87 Å)
Cite:Nucleolar maturation of the human small subunit processome.
Science, 373, 2021
7MQA
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BU of 7mqa by Molmil
Cryo-EM structure of the human SSU processome, state post-A1
Descriptor: 18S rRNA, 40S ribosomal protein S11, 40S ribosomal protein S12, ...
Authors:Vanden Broeck, A, Singh, S, Klinge, S.
Deposit date:2021-05-05
Release date:2021-09-22
Last modified:2024-10-30
Method:ELECTRON MICROSCOPY (2.7 Å)
Cite:Nucleolar maturation of the human small subunit processome.
Science, 373, 2021
7MQ8
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BU of 7mq8 by Molmil
Cryo-EM structure of the human SSU processome, state pre-A1
Descriptor: 18S rRNA, 40S ribosomal protein S11, 40S ribosomal protein S12, ...
Authors:Vanden Broeck, A, Singh, S, Klinge, S.
Deposit date:2021-05-05
Release date:2021-09-22
Last modified:2024-08-28
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Nucleolar maturation of the human small subunit processome.
Science, 373, 2021
4BZE
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BU of 4bze by Molmil
Crystal structure of galactose mutarotase GalM from Bacillus subtilis
Descriptor: ALDOSE 1-EPIMERASE, CITRIC ACID, GLYCEROL
Authors:Vanden Broeck, A, Sauvage, E, Herman, R, Kerff, F, Duez, C, Charlier, P.
Deposit date:2013-07-25
Release date:2014-08-13
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal Structure of Galactose Mutarotase Galm from Bacillus Subtilis
To be Published
6RKS
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BU of 6rks by Molmil
E. coli DNA Gyrase - DNA binding and cleavage domain in State 1 without TOPRIM insertion
Descriptor: (3~{R})-3-[[4-(3,4-dihydro-2~{H}-pyrano[2,3-c]pyridin-6-ylmethylamino)piperidin-1-yl]methyl]-1,4,7-triazatricyclo[6.3.1.0^{4,12}]dodeca-6,8(12),9-triene-5,11-dione, DNA Strand 1, DNA Strand 2, ...
Authors:Vanden Broeck, A, Lamour, V.
Deposit date:2019-04-30
Release date:2019-11-06
Last modified:2024-05-22
Method:ELECTRON MICROSCOPY (4 Å)
Cite:Cryo-EM structure of the complete E. coli DNA gyrase nucleoprotein complex.
Nat Commun, 10, 2019
6RKV
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BU of 6rkv by Molmil
E. coli DNA Gyrase - DNA binding and cleavage domain in State 2
Descriptor: DNA Strand 1, DNA Strand 2, DNA gyrase subunit A, ...
Authors:Vanden Broeck, A, Lamour, V.
Deposit date:2019-04-30
Release date:2019-11-06
Last modified:2024-05-22
Method:ELECTRON MICROSCOPY (4.6 Å)
Cite:Cryo-EM structure of the complete E. coli DNA gyrase nucleoprotein complex.
Nat Commun, 10, 2019
6RKU
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BU of 6rku by Molmil
E. coli DNA Gyrase - DNA binding and cleavage domain in State 1
Descriptor: (3~{R})-3-[[4-(3,4-dihydro-2~{H}-pyrano[2,3-c]pyridin-6-ylmethylamino)piperidin-1-yl]methyl]-1,4,7-triazatricyclo[6.3.1.0^{4,12}]dodeca-6,8(12),9-triene-5,11-dione, DNA Strand 1, DNA Strand 2, ...
Authors:Vanden Broeck, A, Lamour, V.
Deposit date:2019-04-30
Release date:2019-11-06
Last modified:2024-05-22
Method:ELECTRON MICROSCOPY (4 Å)
Cite:Cryo-EM structure of the complete E. coli DNA gyrase nucleoprotein complex.
Nat Commun, 10, 2019
6RKW
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BU of 6rkw by Molmil
CryoEM structure of the complete E. coli DNA Gyrase complex bound to a 130 bp DNA duplex
Descriptor: (3~{R})-3-[[4-(3,4-dihydro-2~{H}-pyrano[2,3-c]pyridin-6-ylmethylamino)piperidin-1-yl]methyl]-1,4,7-triazatricyclo[6.3.1.0^{4,12}]dodeca-6,8(12),9-triene-5,11-dione, DNA (58-MER), DNA (62-MER), ...
Authors:Vanden Broeck, A, Lamour, V.
Deposit date:2019-04-30
Release date:2019-11-06
Last modified:2024-05-22
Method:ELECTRON MICROSCOPY (6.6 Å)
Cite:Cryo-EM structure of the complete E. coli DNA gyrase nucleoprotein complex.
Nat Commun, 10, 2019
4BZG
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BU of 4bzg by Molmil
Crystal structure of galactose mutarotase GalM from Bacillus subtilis in complex with maltose
Descriptor: ALDOSE 1-EPIMERASE, CITRIC ACID, alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose
Authors:Vanden Broeck, A, Sauvage, E, Herman, R, Kerff, F, Duez, C, Charlier, P.
Deposit date:2013-07-25
Release date:2014-08-13
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.13 Å)
Cite:Crystal Structure of Galactose Mutarotase Galm from Bacillus Subtilis in Complex with Maltose
To be Published
4BZH
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BU of 4bzh by Molmil
Crystal structure of galactose mutarotase GalM from Bacillus subtilis in complex with maltose and trehalose
Descriptor: ALDOSE 1-EPIMERASE, CITRIC ACID, GLYCEROL, ...
Authors:Vanden Broeck, A, Sauvage, E, Herman, R, Kerff, F, Duez, C, Charlier, P.
Deposit date:2013-07-25
Release date:2014-08-13
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Crystal Structure of Galactose Mutarotase Galm from Bacillus Subtilis in Complex with Maltose and Trehalose
To be Published
4BZF
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BU of 4bzf by Molmil
Crystal structure of galactose mutarotase GalM from Bacillus subtilis with trehalose
Descriptor: ACETATE ION, ALDOSE 1-EPIMERASE, CITRIC ACID, ...
Authors:Vanden Broeck, A, Sauvage, E, Herman, R, Kerff, F, Duez, C, Charlier, P.
Deposit date:2013-07-25
Release date:2014-08-13
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal Structure of Galactose Mutarotase Galm from Bacillus Subtilis with Trehalose
To be Published
8FKQ
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BU of 8fkq by Molmil
Human nucleolar pre-60S ribosomal subunit (State A2)
Descriptor: 28S rRNA, 5.8S rRNA, 60S ribosomal protein L13, ...
Authors:Vanden Broeck, A, Klinge, S.
Deposit date:2022-12-21
Release date:2023-07-12
Last modified:2023-07-19
Method:ELECTRON MICROSCOPY (2.76 Å)
Cite:Principles of human pre-60 S biogenesis.
Science, 381, 2023
8FL0
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BU of 8fl0 by Molmil
Human nucleolar pre-60S ribosomal subunit (State H)
Descriptor: 28S rRNA, 5S rRNA, 60S ribosomal protein L11, ...
Authors:Vanden Broeck, A, Klinge, S.
Deposit date:2022-12-21
Release date:2023-07-12
Last modified:2024-06-19
Method:ELECTRON MICROSCOPY (2.91 Å)
Cite:Principles of human pre-60 S biogenesis.
Science, 381, 2023
8FKZ
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BU of 8fkz by Molmil
Human nucleolar pre-60S ribosomal subunit (State G)
Descriptor: 28S rRNA, 5.8S rRNA, 60S ribosomal protein L12, ...
Authors:Vanden Broeck, A, Klinge, S.
Deposit date:2022-12-21
Release date:2023-07-12
Last modified:2024-06-19
Method:ELECTRON MICROSCOPY (3.04 Å)
Cite:Principles of human pre-60 S biogenesis.
Science, 381, 2023
8FKR
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BU of 8fkr by Molmil
Human nucleolar pre-60S ribosomal subunit (State B1)
Descriptor: 28S rRNA, 5.8S rRNA, 60S ribosomal protein L12, ...
Authors:Vanden Broeck, A, Klinge, S.
Deposit date:2022-12-21
Release date:2023-07-12
Last modified:2023-07-19
Method:ELECTRON MICROSCOPY (2.89 Å)
Cite:Principles of human pre-60 S biogenesis.
Science, 381, 2023
8FKU
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BU of 8fku by Molmil
Human nucleolar pre-60S ribosomal subunit (State C2)
Descriptor: 28S rRNA, 5.8S rRNA, 60S ribosomal protein L10a, ...
Authors:Vanden Broeck, A, Klinge, S.
Deposit date:2022-12-21
Release date:2023-07-12
Last modified:2023-07-19
Method:ELECTRON MICROSCOPY (2.82 Å)
Cite:Principles of human pre-60 S biogenesis.
Science, 381, 2023
8FKS
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BU of 8fks by Molmil
Human nucleolar pre-60S ribosomal subunit (State B2)
Descriptor: 28S rRNA, 5.8S rRNA, 60S ribosomal protein L12, ...
Authors:Vanden Broeck, A, Klinge, S.
Deposit date:2022-12-21
Release date:2023-07-12
Last modified:2023-07-19
Method:ELECTRON MICROSCOPY (2.88 Å)
Cite:Principles of human pre-60 S biogenesis.
Science, 381, 2023
8FL4
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BU of 8fl4 by Molmil
Human nuclear pre-60S ribosomal subunit (State I3)
Descriptor: 28S rRNA, 5.8S rRNA, 5S rRNA, ...
Authors:Vanden Broeck, A, Klinge, S.
Deposit date:2022-12-21
Release date:2023-07-12
Last modified:2023-07-19
Method:ELECTRON MICROSCOPY (2.89 Å)
Cite:Principles of human pre-60 S biogenesis.
Science, 381, 2023
8FKP
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BU of 8fkp by Molmil
Human nucleolar pre-60S ribosomal subunit (State A1)
Descriptor: 28S rRNA, 5.8S rRNA, 60S ribosomal protein L13, ...
Authors:Vanden Broeck, A, Klinge, S.
Deposit date:2022-12-21
Release date:2023-07-12
Last modified:2024-05-01
Method:ELECTRON MICROSCOPY (2.85 Å)
Cite:Principles of human pre-60 S biogenesis.
Science, 381, 2023

 

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