3W39
| Crystal structure of HLA-B*5201 in complexed with HIV immunodominant epitope (TAFTIPSI) | 分子名称: | Beta-2-microglobulin, HLA class I histocompatibility antigen, B-52 alpha chain, ... | 著者 | Yagita, Y, Kuse, N, Kuroki, K, Gatanaga, H, Carlson, J.M, Chikata, T, Brumme, Z.L, Murakoshi, H, Akahoshi, T, Pfeifer, N, Mallal, S, John, M, Ose, T, Matsubara, H, Kanda, R, Fukunaga, Y, Honda, K, Kawashima, Y, Ariumi, Y, Oka, S, Maenaka, K, Takiguchi, M. | 登録日 | 2012-12-13 | 公開日 | 2013-02-13 | 最終更新日 | 2023-11-08 | 実験手法 | X-RAY DIFFRACTION (3.1 Å) | 主引用文献 | Distinct HIV-1 Escape Patterns Selected by Cytotoxic T Cells with Identical Epitope Specificity J.Virol., 87, 2013
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3AG5
| Crystal Structure of Pantothenate Synthetase from Staphylococcus aureus | 分子名称: | Pantothenate synthetase | 著者 | Satoh, A, Konishi, S, Tamura, H, Stickland, H.G, Whitney, H.M, Smith, A.G, Matsumura, H, Inoue, T. | 登録日 | 2010-03-19 | 公開日 | 2010-07-21 | 最終更新日 | 2024-03-13 | 実験手法 | X-RAY DIFFRACTION (2.5 Å) | 主引用文献 | Substrate-induced closing of the active site revealed by the crystal structure of pantothenate synthetase from Staphylococcus aureus. Biochemistry, 49, 2010
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2D4A
| Structure of the malate dehydrogenase from Aeropyrum pernix | 分子名称: | Malate dehydrogenase | 著者 | Kawakami, R, Sakuraba, H, Tsuge, H, Ohshima, T. | 登録日 | 2005-10-12 | 公開日 | 2006-11-14 | 最終更新日 | 2024-03-13 | 実験手法 | X-RAY DIFFRACTION (2.87 Å) | 主引用文献 | Refolding, characterization and crystal structure of (S)-malate dehydrogenase from the hyperthermophilic archaeon Aeropyrum pernix. Biochim.Biophys.Acta, 1794, 2009
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2DC1
| Crystal Structure Of L-Aspartate Dehydrogenase From Hyperthermophilic Archaeon Archaeoglobus fulgidus | 分子名称: | CITRIC ACID, L-aspartate dehydrogenase, NICOTINAMIDE-ADENINE-DINUCLEOTIDE | 著者 | Yoneda, K, Sakuraba, H, Tsuge, H, Ohshima, T. | 登録日 | 2005-12-19 | 公開日 | 2006-12-26 | 最終更新日 | 2024-03-13 | 実験手法 | X-RAY DIFFRACTION (1.9 Å) | 主引用文献 | Crystal structure of archaeal highly thermostable L-aspartate dehydrogenase/NAD/citrate ternary complex. Febs J., 274, 2007
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2DFH
| Crystal structure of Tk-RNase HII(1-212)-C | 分子名称: | Ribonuclease HII | 著者 | Katagiri, Y, Takano, K, Chon, H, Matsumura, H, Koga, Y, Kanaya, S. | 登録日 | 2006-03-01 | 公開日 | 2007-03-06 | 最終更新日 | 2023-10-25 | 実験手法 | X-RAY DIFFRACTION (2.27 Å) | 主引用文献 | Conformational contagion in a protein: Structural properties of a chameleon sequence Proteins, 68, 2007
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2DF5
| Crystal Structure of Pf-PCP(1-204)-C | 分子名称: | Pyrrolidone-carboxylate peptidase | 著者 | Katagiri, Y, Takano, K, Chon, H, Matsumura, H, Koga, Y, Kanaya, S. | 登録日 | 2006-02-24 | 公開日 | 2007-03-06 | 最終更新日 | 2023-10-25 | 実験手法 | X-RAY DIFFRACTION (2.3 Å) | 主引用文献 | Conformational contagion in a protein: structural properties of a chameleon sequence Proteins, 68, 2007
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2DFI
| Crystal structure of Pf-MAP(1-292)-C | 分子名称: | COBALT (II) ION, Methionine aminopeptidase | 著者 | Katagiri, Y, Takano, K, Chon, H, Matsumura, H, Koga, Y, Kanaya, S. | 登録日 | 2006-03-01 | 公開日 | 2007-03-06 | 最終更新日 | 2023-10-25 | 実験手法 | X-RAY DIFFRACTION (2.1 Å) | 主引用文献 | Conformational contagion in a protein: Structural properties of a chameleon sequence Proteins, 68, 2007
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2DFE
| Crystal structure of Tk-RNase HII(1-200)-C | 分子名称: | Ribonuclease HII | 著者 | Katagiri, Y, Takano, K, Chon, H, Matsumura, H, Koga, Y, Kanaya, S. | 登録日 | 2006-03-01 | 公開日 | 2007-03-06 | 最終更新日 | 2023-10-25 | 実験手法 | X-RAY DIFFRACTION (2.4 Å) | 主引用文献 | Conformational contagion in a protein: Structural properties of a chameleon sequence Proteins, 68, 2007
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2DFF
| Crystal structure of Tk-RNase HII(1-204)-C | 分子名称: | Ribonuclease HII | 著者 | Katagiri, Y, Takano, K, Chon, H, Matsumura, H, Koga, Y, Kanaya, S. | 登録日 | 2006-03-01 | 公開日 | 2007-03-06 | 最終更新日 | 2023-10-25 | 実験手法 | X-RAY DIFFRACTION (2.7 Å) | 主引用文献 | Conformational contagion in a protein: Structural properties of a chameleon sequence Proteins, 68, 2007
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1UCQ
| Crystal structure of the L intermediate of bacteriorhodopsin | 分子名称: | 2,3-DI-O-PHYTANLY-3-SN-GLYCERO-1-PHOSPHORYL-3'-SN-GLYCEROL-1'-PHOSPHATE, 2,3-DI-PHYTANYL-GLYCEROL, RETINAL, ... | 著者 | Kouyama, T, Nishikawa, T, Tokuhisa, T, Okumura, H. | 登録日 | 2003-04-17 | 公開日 | 2003-12-30 | 最終更新日 | 2023-10-25 | 実験手法 | X-RAY DIFFRACTION (2.4 Å) | 主引用文献 | Crystal Structure of the L Intermediate of Bacteriorhodopsin: Evidence for Vertical Translocation of a Water Molecule during the Proton Pumping Cycle. J.Mol.Biol., 335, 2004
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2E5V
| Crystal structure of L-Aspartate Oxidase from hyperthermophilic archaeon Sulfolobus tokodaii | 分子名称: | CHLORIDE ION, FLAVIN-ADENINE DINUCLEOTIDE, L-aspartate oxidase | 著者 | Yoneda, K, Sakuraba, H, Asai, I, Tsuge, H, Katunuma, N, Ohshima, T. | 登録日 | 2006-12-25 | 公開日 | 2008-01-01 | 最終更新日 | 2024-03-13 | 実験手法 | X-RAY DIFFRACTION (2.09 Å) | 主引用文献 | Structure of l-aspartate oxidase from the hyperthermophilic archaeon Sulfolobus tokodaii Biochim.Biophys.Acta, 1784, 2008
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2E4L
| Thermodynamic and Structural Analysis of Thermolabile RNase HI from Shewanella oneidensis MR-1 | 分子名称: | Ribonuclease HI | 著者 | Tadokoro, T, You, D.J, Chon, H, Matsumura, H, Koga, Y, Takano, K, Kanaya, S. | 登録日 | 2006-12-13 | 公開日 | 2007-05-01 | 最終更新日 | 2023-10-25 | 実験手法 | X-RAY DIFFRACTION (2 Å) | 主引用文献 | Structural, thermodynamic, and mutational analyses of a psychrotrophic RNase HI. Biochemistry, 46, 2007
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1NAO
| SOLUTION STRUCTURE OF AN RNA 2'-O-METHYLATED RNA DUPLEX CONTAINING AN RNA/DNA HYBRID SEGMENT AT THE CENTER, NMR, MINIMIZED AVERAGE STRUCTURE | 分子名称: | DNA/RNA (5'-R(*OMGP*OMUP*OMC)-D(P*AP*TP*CP*T)-R(P*OMCP*OMC)-3'), RNA (5'-R(*GP*GP*AP*GP*AP*UP*GP*AP*C)-3') | 著者 | Nishizaki, T, Iwai, S, Ohtsuka, E, Nakamura, H. | 登録日 | 1996-03-29 | 公開日 | 1997-01-27 | 最終更新日 | 2024-05-22 | 実験手法 | SOLUTION NMR | 主引用文献 | Solution structure of an RNA.2'-O-methylated RNA hybrid duplex containing an RNA.DNA hybrid segment at the center. Biochemistry, 36, 1997
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3VKW
| Crystal Structure of the Superfamily 1 Helicase from Tomato Mosaic Virus | 分子名称: | Replicase large subunit, SULFATE ION | 著者 | Nishikiori, M, Sugiyama, S, Xiang, H, Niiyama, M, Ishibashi, K, Inoue, T, Ishikawa, M, Matsumura, H, Katoh, E. | 登録日 | 2011-11-22 | 公開日 | 2012-07-11 | 最終更新日 | 2024-03-20 | 実験手法 | X-RAY DIFFRACTION (1.9 Å) | 主引用文献 | Crystal structure of the superfamily 1 helicase from tomato mosaic virus J.Virol., 86, 2012
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3WXB
| Crystal structure of NADPH bound carbonyl reductase from chicken fatty liver | 分子名称: | 1,2-ETHANEDIOL, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, Uncharacterized protein | 著者 | Yoneda, K, Sakuraba, H, Fukuda, Y, Sone, T, Araki, T, Ohshima, T. | 登録日 | 2014-07-29 | 公開日 | 2015-07-29 | 最終更新日 | 2023-11-08 | 実験手法 | X-RAY DIFFRACTION (1.98 Å) | 主引用文献 | A novel NAD(P)H-dependent carbonyl reductase specifically expressed in the thyroidectomized chicken fatty liver: catalytic properties and crystal structure. Febs J., 282, 2015
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5YCJ
| Ancestral myoglobin aMbWb' of Basilosaurus relative (polyphyly) imidazole-ligand | 分子名称: | Ancestral myoglobin aMbWb' of Basilosaurus relative (polyphyly), IMIDAZOLE, PROTOPORPHYRIN IX CONTAINING FE | 著者 | Isogai, Y, Imamura, H, Nakae, S, Sumi, T, Takahashi, K, Nakagawa, T, Tsuneshige, A, Shirai, T. | 登録日 | 2017-09-07 | 公開日 | 2018-09-19 | 最終更新日 | 2024-03-27 | 実験手法 | X-RAY DIFFRACTION (1.58 Å) | 主引用文献 | Tracing whale myoglobin evolution by resurrecting ancient proteins. Sci Rep, 8, 2018
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7F76
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7EV5
| Crystal structure of BLEG-1 B3 metallo-beta-lactamase | 分子名称: | IODIDE ION, Lactamase_B domain-containing protein, ZINC ION | 著者 | Au, S.X, Muhd Noor, N.D, Matsumura, H, Rahman, R.N.Z.R.A, Normi, Y.M. | 登録日 | 2021-05-20 | 公開日 | 2021-09-08 | 最終更新日 | 2023-11-29 | 実験手法 | X-RAY DIFFRACTION (1.44 Å) | 主引用文献 | Dual Activity BLEG-1 from Bacillus lehensis G1 Revealed Structural Resemblance to B3 Metallo-beta-Lactamase and Glyoxalase II: An Insight into Its Enzyme Promiscuity and Evolutionary Divergence. Int J Mol Sci, 22, 2021
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7DDT
| Ancestral myoglobin aMbSe of Enaliarctos relative (imidazol ligand) | 分子名称: | Ancestral myoglobin aMbSe, IMIDAZOLE, PROTOPORPHYRIN IX CONTAINING FE, ... | 著者 | Isogai, Y, Imamura, H, Nakae, S, Sumi, T, Takahashi, K, Shirai, T. | 登録日 | 2020-10-29 | 公開日 | 2021-09-08 | 最終更新日 | 2023-11-29 | 実験手法 | X-RAY DIFFRACTION (2.9 Å) | 主引用文献 | Common and unique strategies of myoglobin evolution for deep-sea adaptation of diving mammals. Iscience, 24, 2021
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7DDU
| Elephant seal myoglobin esMb | 分子名称: | Myoglobin, PROTOPORPHYRIN IX CONTAINING FE, SULFATE ION | 著者 | Isogai, Y, Imamura, H, Nakae, S, Sumi, T, Takahashi, K, Shirai, T. | 登録日 | 2020-10-29 | 公開日 | 2021-09-08 | 最終更新日 | 2023-11-29 | 実験手法 | X-RAY DIFFRACTION (1.9 Å) | 主引用文献 | Common and unique strategies of myoglobin evolution for deep-sea adaptation of diving mammals. Iscience, 24, 2021
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3WZP
| Crystal structure of the core streptavidin mutant V21 (Y22S/N23D/S27D/Y83S/R84K/E101D/R103K/E116N) complexed with iminobiotin long tail (IMNtail) at 1.2 A resolution | 分子名称: | 6-({5-[(2E,3aS,4S,6aR)-2-iminohexahydro-1H-thieno[3,4-d]imidazol-4-yl]pentanoyl}amino)hexanoic acid, GLYCEROL, Streptavidin | 著者 | Kawato, T, Mizohata, E, Shimizu, Y, Meshizuka, T, Yamamoto, T, Takasu, N, Matsuoka, M, Matsumura, H, Tsumoto, K, Kodama, T, Kanai, M, Doi, H, Inoue, T, Sugiyama, A. | 登録日 | 2014-10-01 | 公開日 | 2015-02-18 | 最終更新日 | 2023-11-08 | 実験手法 | X-RAY DIFFRACTION (1.2 Å) | 主引用文献 | Structure-based design of a streptavidin mutant specific for an artificial biotin analogue. J.Biochem., 157, 2015
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3WZQ
| Crystal structure of the core streptavidin mutant V212 (Y22S/N23D/S27D/S45N/Y83S/R84K/E101D/R103K/E116N) complexed with iminobiotin long tail (IMNtail) at 1.7 A resolution | 分子名称: | 6-({5-[(2E,3aS,4S,6aR)-2-iminohexahydro-1H-thieno[3,4-d]imidazol-4-yl]pentanoyl}amino)hexanoic acid, HEXAETHYLENE GLYCOL, Streptavidin | 著者 | Kawato, T, Mizohata, E, Shimizu, Y, Meshizuka, T, Yamamoto, T, Takasu, N, Matsuoka, M, Matsumura, H, Tsumoto, K, Kodama, T, Kanai, M, Doi, H, Inoue, T, Sugiyama, A. | 登録日 | 2014-10-01 | 公開日 | 2015-02-18 | 最終更新日 | 2023-11-08 | 実験手法 | X-RAY DIFFRACTION (1.7 Å) | 主引用文献 | Structure-based design of a streptavidin mutant specific for an artificial biotin analogue. J.Biochem., 157, 2015
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3WZO
| Crystal structure of the core streptavidin mutant V21 (Y22S/N23D/S27D/Y83S/R84K/E101D/R103K/E116N) complexed with biotin long tail (BTNtail) at 1.5 A resolution | 分子名称: | 6-({5-[(3aS,4S,5S,6aR)-5-oxido-2-oxohexahydro-1H-thieno[3,4-d]imidazol-4-yl]pentanoyl}amino)hexanoic acid, CADMIUM ION, GLYCEROL, ... | 著者 | Kawato, T, Mizohata, E, Shimizu, Y, Meshizuka, T, Yamamoto, T, Takasu, N, Matsuoka, M, Matsumura, H, Tsumoto, K, Kodama, T, Kanai, M, Doi, H, Inoue, T, Sugiyama, A. | 登録日 | 2014-10-01 | 公開日 | 2015-02-18 | 最終更新日 | 2023-11-08 | 実験手法 | X-RAY DIFFRACTION (1.5 Å) | 主引用文献 | Structure-based design of a streptavidin mutant specific for an artificial biotin analogue. J.Biochem., 157, 2015
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3X00
| Crystal structure of the core streptavidin mutant V212 (Y22S/N23D/S27D/S45N/Y83S/R84K/E101D/R103K/E116N) complexed with bis iminobiotin long tail (Bis-IMNtail) at 1.3 A resolution | 分子名称: | 6-({5-[(2E,3aS,4S,6aR)-2-iminohexahydro-1H-thieno[3,4-d]imidazol-4-yl]pentanoyl}amino)hexanoic acid, ETHANE-1,2-DIAMINE, Streptavidin | 著者 | Kawato, T, Mizohata, E, Shimizu, Y, Meshizuka, T, Yamamoto, T, Takasu, N, Matsuoka, M, Matsumura, H, Kodama, T, Kanai, M, Doi, H, Inoue, T, Sugiyama, A. | 登録日 | 2014-10-09 | 公開日 | 2015-01-21 | 最終更新日 | 2023-11-08 | 実験手法 | X-RAY DIFFRACTION (1.3 Å) | 主引用文献 | Structure-based design and synthesis of a bivalent iminobiotin analog showing strong affinity toward a low immunogenic streptavidin mutant. Biosci.Biotechnol.Biochem., 79, 2015
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3AG2
| Bovine Heart Cytochrome c Oxidase in the Carbon Monoxide-bound Fully Reduced State at 100 K | 分子名称: | (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE, (1S)-2-{[(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(STEAROYLOXY)METHYL]ETHYL (5E,8E,11E,14E)-ICOSA-5,8,11,14-TETRAENOATE, (7R,17E,20E)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSA-17,20-DIEN-1-AMINIUM 4-OXIDE, ... | 著者 | Muramoto, K, Ohta, K, Shinzawa-Itoh, K, Kanda, K, Taniguchi, M, Nabekura, H, Yamashita, E, Tsukihara, T, Yoshikawa, S. | 登録日 | 2010-03-19 | 公開日 | 2010-04-28 | 最終更新日 | 2023-11-08 | 実験手法 | X-RAY DIFFRACTION (1.802 Å) | 主引用文献 | Bovine cytochrome c oxidase structures enable O2 reduction with minimization of reactive oxygens and provide a proton-pumping gate Proc.Natl.Acad.Sci.USA, 107, 2010
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