Loading
PDBj
English日本語简体中文繁體中文한국어
✖
ﾒﾆｭｰPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 28 件
7WAG
DownloadVisualize
BU of 7wag by Molmil
Crystal structure of MurJ squeezed form
分子名称: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, DI(HYDROXYETHYL)ETHER, Lipid II flippase MurJ
著者Tsukazaki, T, Kohga, H, Tanaka, Y, Yoshikaie, K, Taniguchi, K, Fujimoto, K.
登録日2021-12-14
公開日2022-06-01
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.55 Å)
主引用文献Crystal structure of the lipid flippase MurJ in a "squeezed" form distinct from its inward- and outward-facing forms.
Structure, 30, 2022
7WAW
DownloadVisualize
BU of 7waw by Molmil
MurJ inward closed form
分子名称: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, lipid II flippase MurJ
著者Tsukazaki, T, Kohga, H, Tanaka, Y, Yoshikaie, K, Taniguchi, K, Fujimoto, K.
登録日2021-12-15
公開日2022-06-01
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Crystal structure of the lipid flippase MurJ in a "squeezed" form distinct from its inward- and outward-facing forms.
Structure, 30, 2022
7WAX
DownloadVisualize
BU of 7wax by Molmil
MurJ inward occluded form
分子名称: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, (4S)-2-METHYL-2,4-PENTANEDIOL, lipid II flippase MurJ
著者Tsukazaki, T, Kohga, H, Tanaka, Y, Yoshikaie, K, Taniguchi, K, Fujimoto, K.
登録日2021-12-15
公開日2022-06-01
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (2.35 Å)
主引用文献Crystal structure of the lipid flippase MurJ in a "squeezed" form distinct from its inward- and outward-facing forms.
Structure, 30, 2022
3AQP
DownloadVisualize
BU of 3aqp by Molmil
Crystal structure of SecDF, a translocon-associated membrane protein, from Thermus thrmophilus
分子名称: Probable SecDF protein-export membrane protein
著者Tsukazaki, T, Mori, H, Echizen, Y, Ishitani, R, Fukai, S, Tanaka, T, Perederina, A, Vassylyev, D.G, Kohno, T, Ito, K, Nureki, O.
登録日2010-11-16
公開日2011-05-18
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (3.3 Å)
主引用文献Structure and function of a membrane component SecDF that enhances protein export
Nature, 474, 2011
2ZQP
DownloadVisualize
BU of 2zqp by Molmil
Crystal Structure of SecYE translocon from Thermus thermophilus
分子名称: Preprotein translocase SecE subunit, Preprotein translocase SecY subunit
著者Tsukazaki, T, Nureki, O.
登録日2008-08-14
公開日2008-10-14
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (6 Å)
主引用文献Conformational transition of Sec machinery inferred from bacterial SecYE structures
Nature, 455, 2008
5XAP
DownloadVisualize
BU of 5xap by Molmil
Crystal structure of SecDF in I form (C2 space group)
分子名称: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, DI(HYDROXYETHYL)ETHER, Protein translocase subunit SecD
著者Tsukazaki, T, Tanaka, Y, Furukwa, A.
登録日2017-03-14
公開日2017-05-17
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.605 Å)
主引用文献Tunnel Formation Inferred from the I-Form Structures of the Proton-Driven Protein Secretion Motor SecDF
Cell Rep, 19, 2017
5XAM
DownloadVisualize
BU of 5xam by Molmil
Crystal structure of SecDF in I form at 4 A resolution
分子名称: Protein translocase subunit SecD
著者Tsukazaki, T, Tanaka, Y, Furukwa, A.
登録日2017-03-14
公開日2017-05-17
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (4 Å)
主引用文献Tunnel Formation Inferred from the I-Form Structures of the Proton-Driven Protein Secretion Motor SecDF
Cell Rep, 19, 2017
5XAN
DownloadVisualize
BU of 5xan by Molmil
Crystal structure of SecDF in I form (P212121 space group)
分子名称: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, POLYETHYLENE GLYCOL (N=34), Protein translocase subunit SecD
著者Tsukazaki, T, Tanaka, Y, Furukwa, A.
登録日2017-03-14
公開日2017-05-17
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.75 Å)
主引用文献Tunnel Formation Inferred from the I-Form Structures of the Proton-Driven Protein Secretion Motor SecDF
Cell Rep, 19, 2017
2ZJS
DownloadVisualize
BU of 2zjs by Molmil
Crystal Structure of SecYE translocon from Thermus thermophilus with a Fab fragment
分子名称: Fab56 (heavy chain), Fab56 (light chain), Preprotein translocase SecE subunit, ...
著者Tsukazaki, T, Mori, H, Fukai, S, Ishitani, R, Perederina, A, Vassylyev, D.G, Ito, K, Nureki, O.
登録日2008-03-08
公開日2008-10-14
最終更新日2024-10-30
実験手法X-RAY DIFFRACTION (3.2 Å)
主引用文献Conformational transition of Sec machinery inferred from bacterial SecYE structures
Nature, 455, 2008
8J4C
DownloadVisualize
BU of 8j4c by Molmil
YeeE(TsuA)-YeeD(TsuB) complex for thiosulfate uptake
分子名称: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, Spirochaeta thermophila YeeE(TsuA)-YeeD(TsuB),UPF0033 domain-containing protein, SirA-like domain-containing protein (chimera), ...
著者Ikei, M, Miyazaki, R, Monden, K, Naito, Y, Takeuchi, A, Takahashi, Y.S, Tanaka, Y, Ichikawa, M, Tsukazaki, T.
登録日2023-04-19
公開日2024-03-27
最終更新日2024-10-09
実験手法X-RAY DIFFRACTION (3.34 Å)
主引用文献YeeD is an essential partner for YeeE-mediated thiosulfate uptake in bacteria and regulates thiosulfate ion decomposition.
Plos Biol., 22, 2024
8K1R
DownloadVisualize
BU of 8k1r by Molmil
YeeE(TsuA)-YeeD(TsuB) complex for thiosulfate uptake
分子名称: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, Spirochaeta thermophila YeeE(TsuA)-YeeD(TsuB),UPF0033 domain-containing protein, SirA-like domain-containing protein (chimera)
著者Ikei, M, Miyazaki, R, Monden, K, Naito, Y, Takeuchi, A, Takahashi, Y.S, Tanaka, Y, Ichikawa, M, Tsukazaki, T.
登録日2023-07-11
公開日2024-03-27
最終更新日2024-10-09
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献YeeD is an essential partner for YeeE-mediated thiosulfate uptake in bacteria and regulates thiosulfate ion decomposition.
Plos Biol., 22, 2024
6LEP
DownloadVisualize
BU of 6lep by Molmil
Crystal structure of thiosulfate transporter YeeE inactive mutant - C91A
分子名称: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, Sulf_transp domain-containing protein, THIOSULFATE
著者Tanaka, Y, Tsukazaki, T, Yoshikaie, K, Sugano, Y, Takeuchi, A, Uchino, S.
登録日2019-11-26
公開日2020-09-02
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Crystal structure of a YeeE/YedE family protein engaged in thiosulfate uptake.
Sci Adv, 6, 2020
6LEO
DownloadVisualize
BU of 6leo by Molmil
Crystal structure of thiosulfate transporter YeeE from Spirochaeta thermophila
分子名称: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, Sulf_transp domain-containing protein, THIOSULFATE
著者Tanaka, Y, Tsukazaki, T, Yoshikaie, K, Takeuchi, A, Uchino, S, Sugano, Y.
登録日2019-11-26
公開日2020-09-02
最終更新日2024-10-30
実験手法X-RAY DIFFRACTION (2.52 Å)
主引用文献Crystal structure of a YeeE/YedE family protein engaged in thiosulfate uptake.
Sci Adv, 6, 2020
5CH4
DownloadVisualize
BU of 5ch4 by Molmil
Peptide-Bound State of Thermus thermophilus SecYEG
分子名称: Protein translocase subunit SecE, Protein translocase subunit SecY, Putative preprotein translocase, ...
著者Tanaka, Y, Sugano, Y, Takemoto, M, Kusakizako, T, Kumazaki, K, Ishitani, R, Nureki, O, Tsukazaki, T.
登録日2015-07-10
公開日2015-11-25
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (3.64 Å)
主引用文献Crystal Structures of SecYEG in Lipidic Cubic Phase Elucidate a Precise Resting and a Peptide-Bound State.
Cell Rep, 13, 2015
2RRN
DownloadVisualize
BU of 2rrn by Molmil
Solution structure of SecDF periplasmic domain P4
分子名称: Probable SecDF protein-export membrane protein
著者Tanaka, T, Tsukazaki, T, Echizen, Y, Nureki, O, Kohno, T.
登録日2011-01-30
公開日2011-05-18
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献Structure and function of a membrane component SecDF that enhances protein export
Nature, 474, 2011
5AWW
DownloadVisualize
BU of 5aww by Molmil
Precise Resting State of Thermus thermophilus SecYEG
分子名称: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, Protein translocase subunit SecE, Protein translocase subunit SecY, ...
著者Tanaka, Y, Sugano, Y, Takemoto, M, Kusakizako, T, Kumazaki, K, Ishitani, R, Nureki, O, Tsukazaki, T.
登録日2015-07-10
公開日2015-11-25
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.724 Å)
主引用文献Crystal Structures of SecYEG in Lipidic Cubic Phase Elucidate a Precise Resting and a Peptide-Bound State.
Cell Rep, 13, 2015
2IPC
DownloadVisualize
BU of 2ipc by Molmil
Crystal structure of the translocation ATPase SecA from Thermus thermophilus reveals a parallel, head-to-head dimer
分子名称: Preprotein translocase SecA subunit
著者Vassylyev, D.G, Mori, H, Vassylyeva, M.N, Tsukazaki, T, Kimura, Y, Tahirov, T.H, Ito, K, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2006-10-12
公開日2006-11-28
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Crystal Structure of the Translocation ATPase SecA from Thermus thermophilus Reveals a Parallel, Head-to-Head Dimer.
J.Mol.Biol., 364, 2006
7DQK
DownloadVisualize
BU of 7dqk by Molmil
A nicotine MATE transporter, Nicotiana tabacum MATE2 (NtMATE2)
分子名称: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, CHLORIDE ION, DI(HYDROXYETHYL)ETHER, ...
著者Tanaka, Y, Tsukazaki, T, Sasaki, A, Iwaki, S.
登録日2020-12-24
公開日2021-06-09
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (3.5 Å)
主引用文献Crystal structures of a nicotine MATE transporter provide insight into its mechanism of substrate transport.
Febs Lett., 595, 2021
3AQO
DownloadVisualize
BU of 3aqo by Molmil
Structure and function of a membrane component SecDF that enhances protein export
分子名称: Probable SecDF protein-export membrane protein
著者Echizen, Y, Tsukazaki, T, Ishitani, R, Nureki, O.
登録日2010-11-16
公開日2011-05-18
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Structure and function of a membrane component SecDF that enhances protein export.
Nature, 474, 2011
5XI8
DownloadVisualize
BU of 5xi8 by Molmil
Structure and function of the TPR domain
分子名称: Beta-barrel assembly-enhancing protease
著者Tanaka, Y, Tsukazaki, T.
登録日2017-04-26
公開日2017-10-18
最終更新日2024-10-16
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献The TPR domain of BepA is required for productive interaction with substrate proteins and the beta-barrel assembly machinery complex.
Mol. Microbiol., 106, 2017
3WO7
DownloadVisualize
BU of 3wo7 by Molmil
Crystal structure of YidC from Bacillus halodurans (form II)
分子名称: COPPER (II) ION, Membrane protein insertase YidC 2
著者Kumazaki, K, Tsukazaki, T, Ishitani, R, Nureki, O.
登録日2013-12-20
公開日2014-04-23
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (3.201 Å)
主引用文献Structural basis of Sec-independent membrane protein insertion by YidC.
Nature, 509, 2014
3WVF
DownloadVisualize
BU of 3wvf by Molmil
Crystal structure of YidC from Escherichia coli
分子名称: Membrane protein insertase YidC
著者Kumazaki, K, Tsukazaki, T, Kishimoto, T, Ishitani, R, Nureki, O.
登録日2014-05-20
公開日2014-12-17
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (3.2 Å)
主引用文献Crystal structure of Escherichia coli YidC, a membrane protein chaperone and insertase
Sci Rep, 4, 2014
3WO6
DownloadVisualize
BU of 3wo6 by Molmil
Crystal structure of YidC from Bacillus halodurans (form I)
分子名称: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, CADMIUM ION, Membrane protein insertase YidC 2
著者Kumazaki, K, Tsukazaki, T, Ishitani, R, Nureki, O.
登録日2013-12-20
公開日2014-04-23
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (2.403 Å)
主引用文献Structural basis of Sec-independent membrane protein insertion by YidC.
Nature, 509, 2014
6AL2
DownloadVisualize
BU of 6al2 by Molmil
Crystal structure of E. coli YidC at 2.8 A resolution
分子名称: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, Membrane protein insertase YidC
著者Tanaka, Y, Tsukazaki, T, Izumioka, A, Hamid, A.A, Fujii, A.
登録日2018-09-05
公開日2018-11-07
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献2.8-angstrom crystal structure of Escherichia coli YidC revealing all core regions, including flexible C2 loop.
Biochem. Biophys. Res. Commun., 505, 2018
5YHF
DownloadVisualize
BU of 5yhf by Molmil
Crystal structure of SecDF in Super-membrane-facing form
分子名称: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, DI(HYDROXYETHYL)ETHER, Protein translocase subunit SecDF
著者Tanaka, Y, Tsukazaki, T, Yoshikaie, K, Furukawa, A.
登録日2017-09-28
公開日2018-02-14
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Remote Coupled Drastic beta-Barrel to beta-Sheet Transition of the Protein Translocation Motor.
Structure, 26, 2018

 

12>

226707

件を2024-10-30に公開中

PDB statisticsPDBj update infoContact PDBjnumon