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PDB: 97 results

1DM2
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BU of 1dm2 by Molmil
HUMAN CYCLIN-DEPENDENT KINASE 2 COMPLEXED WITH THE INHIBITOR HYMENIALDISINE
Descriptor: 1,2-ETHANEDIOL, 4-(5-AMINO-4-OXO-4H-PYRAZOL-3-YL)-2-BROMO-4,5,6,7-TETRAHYDRO-3AH-PYRROLO[2,3-C]AZEPIN-8-ONE, CYCLIN-DEPENDENT KINASE 2
Authors:Thunnissen, A.M, Kim, S.-H.
Deposit date:1999-12-13
Release date:2000-05-31
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Inhibition of cyclin-dependent kinases, GSK-3beta and CK1 by hymenialdisine, a marine sponge constituent.
Chem.Biol., 7, 2000
4X1C
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BU of 4x1c by Molmil
Crystal structure of 4-OT from Pseudomonas putida mt-2 with an enamine adduct on the N-terminal proline at 1.7 Angstrom resolution
Descriptor: 2-hydroxymuconate tautomerase, COBALT HEXAMMINE(III)
Authors:Thunnissen, A.M.W.H, Poddar, H.
Deposit date:2014-11-24
Release date:2015-03-11
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Evidence for the Formation of an Enamine Species during Aldol and Michael-type Addition Reactions Promiscuously Catalyzed by 4-Oxalocrotonate Tautomerase.
Chembiochem, 16, 2015
4X19
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BU of 4x19 by Molmil
Crystal structure of native 4-OT from Pseudomonas putida mt-2 at 1.94 Angstrom
Descriptor: 2-hydroxymuconate tautomerase, COBALT HEXAMMINE(III)
Authors:Thunnissen, A.M.W.H, Poddar, H.
Deposit date:2014-11-24
Release date:2015-03-11
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.944 Å)
Cite:Evidence for the Formation of an Enamine Species during Aldol and Michael-type Addition Reactions Promiscuously Catalyzed by 4-Oxalocrotonate Tautomerase.
Chembiochem, 16, 2015
7P76
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BU of 7p76 by Molmil
Re-engineered 2-deoxy-D-ribose-5-phosphate aldolase catalysing asymmetric Michael addition reactions, Schiff base complex with cinnamaldehyde
Descriptor: (2E)-3-phenylprop-2-enal, Deoxyribose-phosphate aldolase, GLYCEROL
Authors:Thunnissen, A.M.W.H, Rozeboom, H.J, Kunzendorf, A, Poelarends, G.J.
Deposit date:2021-07-19
Release date:2021-10-27
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Unlocking Asymmetric Michael Additions in an Archetypical Class I Aldolase by Directed Evolution.
Acs Catalysis, 11, 2021
7P75
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BU of 7p75 by Molmil
Re-engineered 2-deoxy-D-ribose-5-phosphate aldolase catalysing asymmetric Michael addition reactions in substrate-free state
Descriptor: Deoxyribose-phosphate aldolase
Authors:Thunnissen, A.M.W.H, Rozeboom, H.J, Kunzendorf, A, Poelarends, G.J.
Deposit date:2021-07-19
Release date:2021-10-27
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.23 Å)
Cite:Unlocking Asymmetric Michael Additions in an Archetypical Class I Aldolase by Directed Evolution.
Acs Catalysis, 11, 2021
5CLO
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BU of 5clo by Molmil
Crystal structure of a 4-oxalocrotonate tautomerase mutant in complex with nitrostyrene at 2.3 Angstrom
Descriptor: 2-hydroxymuconate tautomerase, trans beta nitrostyrene
Authors:Thunnissen, A.M.W.H, Poddar, H.
Deposit date:2015-07-16
Release date:2016-03-09
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Using mutability landscapes of a promiscuous tautomerase to guide the engineering of enantioselective Michaelases.
Nat Commun, 7, 2016
5CLN
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BU of 5cln by Molmil
Crystal structure of a 4-oxalocrotonate tautomerase mutant at 2.7 Angstrom
Descriptor: 2-hydroxymuconate tautomerase
Authors:Thunnissen, A.M.W.H, Poddar, H.
Deposit date:2015-07-16
Release date:2016-03-09
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.71 Å)
Cite:Using mutability landscapes of a promiscuous tautomerase to guide the engineering of enantioselective Michaelases.
Nat Commun, 7, 2016
1SLY
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BU of 1sly by Molmil
COMPLEX OF THE 70-KDA SOLUBLE LYTIC TRANSGLYCOSYLASE WITH BULGECIN A
Descriptor: 4-O-(4-O-SULFONYL-N-ACETYLGLUCOSAMININYL)-5-METHYLHYDROXY-L-PROLINE-TAURINE, 70-KDA SOLUBLE LYTIC TRANSGLYCOSYLASE
Authors:Thunnissen, A.M.W.H, Kalk, K.H, Rozeboom, H.J, Dijkstra, B.W.
Deposit date:1995-08-02
Release date:1996-08-17
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structure of the 70-kDa soluble lytic transglycosylase complexed with bulgecin A. Implications for the enzymatic mechanism.
Biochemistry, 34, 1995
9H9Y
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BU of 9h9y by Molmil
Crystal structure of metal-free LmrR_V15Bpy variant BVS in a closed state
Descriptor: Transcriptional regulator, PadR-like family
Authors:Thunnissen, A.M.W.H, Jiang, R, Casilli, F, Aalbers, F, Roelfes, G.
Deposit date:2024-11-01
Release date:2025-03-05
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:An artificial copper-Michaelase featuring a genetically encoded bipyridine ligand for asymmetric additions to nitroalkenes.
Angew.Chem.Int.Ed.Engl., 2025
9HA0
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BU of 9ha0 by Molmil
Crystal structure of Cu(II)-bound LmrR_V15Bpy variant BVS
Descriptor: COPPER (II) ION, GLYCEROL, IMIDAZOLE, ...
Authors:Thunnissen, A.M.W.H, Jiang, R, Casilli, F, Aalbers, F, Roelfes, G.
Deposit date:2024-11-01
Release date:2025-03-05
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:An artificial copper-Michaelase featuring a genetically encoded bipyridine ligand for asymmetric additions to nitroalkenes.
Angew.Chem.Int.Ed.Engl., 2025
9GKT
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BU of 9gkt by Molmil
Crystal structure of artificial enzyme LmrR_pAF variant RGN
Descriptor: Transcriptional regulator, PadR-like family
Authors:Thunnissen, A.M.W.H, Leveson-Gower, R.B, Rozeboom, H.J, Roelfes, G.
Deposit date:2024-08-26
Release date:2025-02-26
Method:X-RAY DIFFRACTION (2.45 Å)
Cite:Evolutionary Specialization of a Promiscuous Designer Enzyme.
Acs Catalysis, 15, 2025
9FD8
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BU of 9fd8 by Molmil
Re-engineered peroxygenase variant of 2-deoxy-D-ribose-5-phosphate aldolase, Schiff-base complex with 4-chloro-cinnamaldehyde
Descriptor: (2E)-3-(4-chlorophenyl)prop-2-enal, Deoxyribose-phosphate aldolase, GLYCEROL
Authors:Thunnissen, A.M.W.H, Zhou, H, Frietema, H.O.T, Poelarends, G.J.
Deposit date:2024-05-16
Release date:2025-03-12
Method:X-RAY DIFFRACTION (1.58 Å)
Cite:Engineering 2-Deoxy-D-ribose-5-phosphate Aldolase for anti- and syn-Selective Epoxidations of alpha , beta-Unsaturated Aldehydes.
Angew.Chem.Int.Ed.Engl., 2025
9H9W
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BU of 9h9w by Molmil
Crystal structure of metal-free LmrR_V15Bpy in an open state
Descriptor: 2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)-PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Transcriptional regulator, PadR-like family
Authors:Thunnissen, A.M.W.H, Jiang, R, Casilli, F, Aalbers, F, Roelfes, G.
Deposit date:2024-11-01
Release date:2025-03-05
Method:X-RAY DIFFRACTION (2.26 Å)
Cite:An artificial copper-Michaelase featuring a genetically encoded bipyridine ligand for asymmetric additions to nitroalkenes.
Angew.Chem.Int.Ed.Engl., 2025
9FD7
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BU of 9fd7 by Molmil
Re-engineered peroxygenase variant of 2-deoxy-D-ribose-5-phosphate aldolase in substrate-free state
Descriptor: Deoxyribose-phosphate aldolase, GLYCEROL
Authors:Thunnissen, A.M.W.H, Zhou, H, Frietema, H.O.T, Poelarends, G.J.
Deposit date:2024-05-16
Release date:2025-03-12
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Engineering 2-Deoxy-D-ribose-5-phosphate Aldolase for anti- and syn-Selective Epoxidations of alpha , beta-Unsaturated Aldehydes.
Angew.Chem.Int.Ed.Engl., 2025
9GKR
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BU of 9gkr by Molmil
Crystal structure of artificial enzyme LmrR_pAF variant RMH in crystal form 1
Descriptor: Transcriptional regulator, PadR-like family
Authors:Thunnissen, A.M.W.H, Leveson-Gower, R.B, Rozeboom, H.J, Roelfes, G.
Deposit date:2024-08-26
Release date:2025-02-26
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:Evolutionary Specialization of a Promiscuous Designer Enzyme.
Acs Catalysis, 15, 2025
9GKS
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BU of 9gks by Molmil
Crystal structure of artificial enzyme LmrR_pAF variant RMH in crystal form 2
Descriptor: Transcriptional regulator, PadR-like family
Authors:Thunnissen, A.M.W.H, Leveson-Gower, R.B, Rozeboom, H.J, Roelfes, G.
Deposit date:2024-08-26
Release date:2025-02-26
Method:X-RAY DIFFRACTION (2.24 Å)
Cite:Evolutionary Specialization of a Promiscuous Designer Enzyme.
Acs Catalysis, 15, 2025
9FD9
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BU of 9fd9 by Molmil
Re-engineered peroxygenase variant of 2-deoxy-D-ribose-5-phosphate aldolase, Schiff-base complex with 4-nitro-cinnamaldehyde
Descriptor: 4-nitro-cinnamaldehyde, Deoxyribose-phosphate aldolase, GLYCEROL
Authors:Thunnissen, A.M.W.H, Zhou, H, Frietema, H.O.T, Poelarends, G.J.
Deposit date:2024-05-16
Release date:2025-03-12
Method:X-RAY DIFFRACTION (1.52 Å)
Cite:Engineering 2-Deoxy-D-ribose-5-phosphate Aldolase for anti- and syn-Selective Epoxidations of alpha , beta-Unsaturated Aldehydes.
Angew.Chem.Int.Ed.Engl., 2025
9G52
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BU of 9g52 by Molmil
Crystal structure of LmrR with V15 replaced by unnatural amino acid 4-mercaptophenylalanine, Au(I) bound
Descriptor: GOLD ION, Transcriptional regulator, PadR-like family
Authors:Thunnissen, A.M.W.H, Aalbers, F.S, Veen, M.J, Rozeboom, H.J, Roelfes, G.
Deposit date:2024-07-16
Release date:2024-12-25
Last modified:2025-03-26
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Artificial Gold Enzymes Using a Genetically Encoded Thiophenol-Based Noble-Metal-Binding Ligand.
Angew.Chem.Int.Ed.Engl., 64, 2025
9G51
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BU of 9g51 by Molmil
Crystal structure of LmrR with V15 replaced by unnatural amino acid 4-mercaptophenylalanine, apo
Descriptor: Transcriptional regulator, PadR-like family
Authors:Thunnissen, A.M.W.H, Aalbers, F.S, Veen, M.J, Rozeboom, H.J, Roelfes, G.
Deposit date:2024-07-16
Release date:2024-12-25
Last modified:2025-03-26
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Artificial Gold Enzymes Using a Genetically Encoded Thiophenol-Based Noble-Metal-Binding Ligand.
Angew.Chem.Int.Ed.Engl., 64, 2025
9H9Z
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BU of 9h9z by Molmil
Crystal structure of Cu(II)-bound LmrR_V15Bpy
Descriptor: COPPER (II) ION, MALONATE ION, Transcriptional regulator, ...
Authors:Thunnissen, A.M.W.H, Jiang, R, Casilli, F, Aalbers, F, Roelfes, G.
Deposit date:2024-11-01
Release date:2025-03-05
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:An artificial copper-Michaelase featuring a genetically encoded bipyridine ligand for asymmetric additions to nitroalkenes.
Angew.Chem.Int.Ed.Engl., 2025
9H9X
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BU of 9h9x by Molmil
Crystal structure of metal-free LmrR_V15Bpy in a closed state
Descriptor: Transcriptional regulator, PadR-like family
Authors:Thunnissen, A.M.W.H, Jiang, R, Casilli, F, Aalbers, F, Roelfes, G.
Deposit date:2024-11-01
Release date:2025-03-05
Method:X-RAY DIFFRACTION (2.12 Å)
Cite:An artificial copper-Michaelase featuring a genetically encoded bipyridine ligand for asymmetric additions to nitroalkenes.
Angew.Chem.Int.Ed.Engl., 2025
7QZ8
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BU of 7qz8 by Molmil
Transcriptional regulator LmrR with bound daunomycin and with Trp-67 and Trp-96 replaced by the unnatural amino acid 5,6-difluoroTrp
Descriptor: DAUNOMYCIN, Transcriptional regulator, PadR-like family
Authors:Thunnissen, A.M.W.H.
Deposit date:2022-01-30
Release date:2022-11-23
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:The Role of Tryptophan in pi Interactions in Proteins: An Experimental Approach.
J.Am.Chem.Soc., 144, 2022
7QZ7
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BU of 7qz7 by Molmil
Transcriptional regulator LmrR with bound daunomycin and with Trp-67 and Trp-96 replaced by 5,6,7-trifluoroTrp
Descriptor: DAUNOMYCIN, Transcriptional regulator, PadR-like family
Authors:Thunnissen, A.M.W.H.
Deposit date:2022-01-30
Release date:2022-11-23
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:The Role of Tryptophan in pi Interactions in Proteins: An Experimental Approach.
J.Am.Chem.Soc., 144, 2022
7QZ9
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BU of 7qz9 by Molmil
Transcriptional regulator LmrR with Trp-67 and Trp-96 replaced by the unnatural amino acid 5,6-difluoroTrp
Descriptor: Transcriptional regulator, PadR-like family
Authors:Thunnissen, A.M.W.H.
Deposit date:2022-01-30
Release date:2022-11-23
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.31 Å)
Cite:The Role of Tryptophan in pi Interactions in Proteins: An Experimental Approach.
J.Am.Chem.Soc., 144, 2022
7QZ5
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BU of 7qz5 by Molmil
Transcriptional regulator LmrR with Trp-67 and Trp-96 replaced by the unnatural amino acid 5-fluoroTrp
Descriptor: Transcriptional regulator, PadR-like family
Authors:Thunnissen, A.M.W.H.
Deposit date:2022-01-30
Release date:2022-11-23
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:The Role of Tryptophan in pi Interactions in Proteins: An Experimental Approach.
J.Am.Chem.Soc., 144, 2022

 

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