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PDB: 272 results

6OB5
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BU of 6ob5 by Molmil
Computationally-designed, modular sense/response system (S3-2D)
Descriptor: Ankyrin Repeat Domain (AR), S3-2D variant, FARNESYL DIPHOSPHATE, ...
Authors:Thompson, M.C, Glasgow, A.A, Huang, Y.M, Fraser, J.S, Kortemme, T.
Deposit date:2019-03-19
Release date:2019-12-04
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.208 Å)
Cite:Computational design of a modular protein sense-response system.
Science, 366, 2019
6ARD
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BU of 6ard by Molmil
Monoclinic EutL - structure determined from merged "Group 2" data
Descriptor: Ethanolamine utilization protein, SODIUM ION
Authors:Thompson, M.C, Cascio, D, Yeates, T.O.
Deposit date:2017-08-22
Release date:2017-10-11
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2 Å)
Cite:Microfocus diffraction from different regions of a protein crystal: structural variations and unit-cell polymorphism.
Acta Crystallogr D Struct Biol, 74, 2018
6ARC
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BU of 6arc by Molmil
Monoclinic EutL - structure determined from merged "Group 1" data
Descriptor: CHLORIDE ION, Ethanolamine utilization protein, SODIUM ION
Authors:Thompson, M.C, Cascio, D, Yeates, T.O.
Deposit date:2017-08-22
Release date:2017-10-11
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Microfocus diffraction from different regions of a protein crystal: structural variations and unit-cell polymorphism.
Acta Crystallogr D Struct Biol, 74, 2018
8FTT
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BU of 8ftt by Molmil
Crystal structure of a glycosylase specific nanobody
Descriptor: Anti-NEIL1 Nanobody, SULFATE ION
Authors:Thompson, M.K, Prakash, A.
Deposit date:2023-01-13
Release date:2023-10-11
Method:X-RAY DIFFRACTION (2.08 Å)
Cite:Deciphering the orthorhombic crystal structure of a novel NEIL1 nanobody with pseudo-merohedral twinning.
Biorxiv, 2023
4EAH
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BU of 4eah by Molmil
Crystal structure of the formin homology 2 domain of FMNL3 bound to actin
Descriptor: ACETATE ION, ADENOSINE-5'-TRIPHOSPHATE, Actin, ...
Authors:Thompson, M.E, Heimsath, E.G, Gauvin, T.J, Higgs, H.N, Kull, F.J.
Deposit date:2012-03-22
Release date:2012-12-12
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (3.4 Å)
Cite:FMNL3 FH2-actin structure gives insight into formin-mediated actin nucleation and elongation.
Nat.Struct.Mol.Biol., 20, 2013
4EDI
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BU of 4edi by Molmil
Disulfide bonded EutL from Clostridium perfringens
Descriptor: Ethanolamine utilization protein, SODIUM ION
Authors:Thompson, M.C, Cascio, D, Crowley, C.S, Kopstein, J.S, Yeates, T.O.
Deposit date:2012-03-27
Release date:2013-03-27
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.998 Å)
Cite:An allosteric model for control of pore opening by substrate binding in the EutL microcompartment shell protein.
Protein Sci., 24, 2015
4FDZ
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BU of 4fdz by Molmil
EutL from Clostridium perfringens, Crystallized Under Reducing Conditions
Descriptor: Ethanolamine utilization protein, SODIUM ION
Authors:Thompson, M.C, Cascio, D, Crowley, C.S, Kopstein, J.S, Yeates, T.O.
Deposit date:2012-05-29
Release date:2013-05-29
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.802 Å)
Cite:An allosteric model for control of pore opening by substrate binding in the EutL microcompartment shell protein.
Protein Sci., 24, 2015
4HSX
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BU of 4hsx by Molmil
Structure of the L100F mutant of dehaloperoxidase-hemoglobin A from Amphitrite ornata with 4-bromophenol
Descriptor: 4-BROMOPHENOL, Dehaloperoxidase A, GLYCEROL, ...
Authors:Thompson, M.K, Plummer, A, Franzen, S.
Deposit date:2012-10-31
Release date:2013-05-01
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.12 Å)
Cite:Role of polarity of the distal pocket in the control of inhibitor binding in dehaloperoxidase-hemoglobin.
Biochemistry, 52, 2013
4JH9
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BU of 4jh9 by Molmil
Crystal Structure of FosB from Bacillus cereus with Maganese and Potential BSH-Fosfomycin Product
Descriptor: (2R)-2-azanyl-3-[(1R,2S)-2-oxidanyl-1-phosphono-propyl]sulfanyl-propanoic acid, MANGANESE (II) ION, Metallothiol transferase FosB
Authors:Thompson, M.K, Harp, J, Keithly, M.E, Jagessar, K, Cook, P.D, Armstrong, R.N.
Deposit date:2013-03-04
Release date:2013-10-02
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.77 Å)
Cite:Structural and Chemical Aspects of Resistance to the Antibiotic Fosfomycin Conferred by FosB from Bacillus cereus.
Biochemistry, 52, 2013
4JH2
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BU of 4jh2 by Molmil
Crystal Structure of FosB from Bacillus cereus with Zinc and Sulfate at 1.27 A Resolution
Descriptor: FORMIC ACID, MAGNESIUM ION, Metallothiol transferase FosB, ...
Authors:Thompson, M.K, Harp, J, Keithly, M.E, Jagessar, K, Cook, P.D, Armstrong, R.N.
Deposit date:2013-03-04
Release date:2013-10-02
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.27 Å)
Cite:Structural and Chemical Aspects of Resistance to the Antibiotic Fosfomycin Conferred by FosB from Bacillus cereus.
Biochemistry, 52, 2013
4JH7
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BU of 4jh7 by Molmil
Crystal Structure of FosB from Bacillus cereus with Manganese and L-Cysteine-Fosfomycin Product
Descriptor: (2R)-2-azanyl-3-[(1R,2S)-2-oxidanyl-1-phosphono-propyl]sulfanyl-propanoic acid, FORMIC ACID, MAGNESIUM ION, ...
Authors:Thompson, M.K, Harp, J, Keithly, M.E, Jagessar, K, Cook, P.D, Armstrong, R.N.
Deposit date:2013-03-04
Release date:2013-10-02
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Structural and Chemical Aspects of Resistance to the Antibiotic Fosfomycin Conferred by FosB from Bacillus cereus.
Biochemistry, 52, 2013
4JH1
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BU of 4jh1 by Molmil
Crystal Structure of FosB from Bacillus cereus with Zinc and Sulfate at 1.55 A Resolution -SAD Phasing
Descriptor: GLYCEROL, MAGNESIUM ION, Metallothiol transferase FosB, ...
Authors:Thompson, M.K, Harp, J, Keithly, M.E, Jagessar, K, Cook, P.D, Armstrong, R.N.
Deposit date:2013-03-04
Release date:2013-10-02
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Structural and Chemical Aspects of Resistance to the Antibiotic Fosfomycin Conferred by FosB from Bacillus cereus.
Biochemistry, 52, 2013
4JH4
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BU of 4jh4 by Molmil
Crystal Structure of FosB from Bacillus cereus with Nickel and Fosfomycin
Descriptor: FOSFOMYCIN, Metallothiol transferase FosB, NICKEL (II) ION
Authors:Thompson, M.K, Harp, J, Keithly, M.E, Jagessar, K, Cook, P.D, Armstrong, R.N.
Deposit date:2013-03-04
Release date:2013-10-02
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural and Chemical Aspects of Resistance to the Antibiotic Fosfomycin Conferred by FosB from Bacillus cereus.
Biochemistry, 52, 2013
4JH3
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BU of 4jh3 by Molmil
Crystal Structure of FosB from Bacillus cereus with Zinc and Fosfomycin
Descriptor: FORMIC ACID, FOSFOMYCIN, GLYCEROL, ...
Authors:Thompson, M.K, Harp, J, Keithly, M.E, Jagessar, K, Cook, P.D, Armstrong, R.N.
Deposit date:2013-03-04
Release date:2013-10-02
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Structural and Chemical Aspects of Resistance to the Antibiotic Fosfomycin Conferred by FosB from Bacillus cereus.
Biochemistry, 52, 2013
4JH6
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BU of 4jh6 by Molmil
Crystal Structure of FosB from Bacillus cereus with Manganese and Fosfomycin
Descriptor: FOSFOMYCIN, GLYCEROL, MAGNESIUM ION, ...
Authors:Thompson, M.K, Harp, J, Keithly, M.E, Jagessar, K, Cook, P.D, Armstrong, R.N.
Deposit date:2013-03-04
Release date:2013-10-02
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.32 Å)
Cite:Structural and Chemical Aspects of Resistance to the Antibiotic Fosfomycin Conferred by FosB from Bacillus cereus.
Biochemistry, 52, 2013
5V5D
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BU of 5v5d by Molmil
Room temperature (280K) crystal structure of Kaposi's sarcoma-associated herpesvirus protease in complex with allosteric inhibitor (compound 250)
Descriptor: 4-{[6-(cyclohexylmethyl)pyridine-2-carbonyl]amino}-3-(phenylamino)benzoic acid, ORF 17
Authors:Thompson, M.C, Acker, T.M, Fraser, J.S, Craik, C.S.
Deposit date:2017-03-14
Release date:2017-04-12
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.104 Å)
Cite:Allosteric Inhibitors, Crystallography, and Comparative Analysis Reveal Network of Coordinated Movement across Human Herpesvirus Proteases.
J. Am. Chem. Soc., 139, 2017
4JH5
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BU of 4jh5 by Molmil
Crystal Structure of FosB from Bacillus cereus with Cobalt and Fosfomycin
Descriptor: COBALT (II) ION, FOSFOMYCIN, MAGNESIUM ION, ...
Authors:Thompson, M.K, Harp, J, Keithly, M.E, Jagessar, K, Cook, P.D, Armstrong, R.N.
Deposit date:2013-03-04
Release date:2013-10-02
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.77 Å)
Cite:Structural and Chemical Aspects of Resistance to the Antibiotic Fosfomycin Conferred by FosB from Bacillus cereus.
Biochemistry, 52, 2013
4JH8
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BU of 4jh8 by Molmil
Crystal Structure of FosB from Bacillus cereus with Zinc and L-Cysteine-Fosfomycin Ternary Complex
Descriptor: CYSTEINE, FOSFOMYCIN, GLYCEROL, ...
Authors:Thompson, M.K, Harp, J, Keithly, M.E, Jagessar, K, Cook, P.D, Armstrong, R.N.
Deposit date:2013-03-04
Release date:2013-10-02
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.41 Å)
Cite:Structural and Chemical Aspects of Resistance to the Antibiotic Fosfomycin Conferred by FosB from Bacillus cereus.
Biochemistry, 52, 2013
6W90
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BU of 6w90 by Molmil
De novo designed NTF2 fold protein NT-9
Descriptor: 1,2-Distearoyl-sn-glycerophosphoethanolamine, NTF2 fold protein loop-helix-loop design NT-9
Authors:Thompson, M.C, Pan, X, Liu, L, Fraser, J.S, Kortemme, T.
Deposit date:2020-03-21
Release date:2020-08-19
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Expanding the space of protein geometries by computational design of de novo fold families.
Science, 369, 2020
5V5E
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BU of 5v5e by Molmil
Room temperature (280K) crystal structure of Kaposi's sarcoma-associated herpesvirus protease in complex with allosteric inhibitor (compound 733)
Descriptor: 4-{[6-(cyclohexylmethyl)pyridine-2-carbonyl]amino}-3-{[3-(trifluoromethoxy)phenyl]amino}benzoic acid, ORF 17
Authors:Thompson, M.C, Acker, T.M, Fraser, J.S, Craik, C.S.
Deposit date:2017-03-14
Release date:2017-04-12
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.299 Å)
Cite:Allosteric Inhibitors, Crystallography, and Comparative Analysis Reveal Network of Coordinated Movement across Human Herpesvirus Proteases.
J. Am. Chem. Soc., 139, 2017
4LIW
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BU of 4liw by Molmil
CcmK1 Carboxysome Shell Protein from Synechocystis PCC6803, L11K Point Mutant
Descriptor: Carbon dioxide-concentrating mechanism protein CcmK homolog 1, SULFATE ION
Authors:Thompson, M.C, Yeates, T.O.
Deposit date:2013-07-03
Release date:2014-01-08
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:A challenging interpretation of a hexagonally layered protein structure.
Acta Crystallogr.,Sect.D, 70, 2014
4HSW
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BU of 4hsw by Molmil
Structure of the L100F mutant of dehaloperoxidase-hemoglobin A from Amphitrite ornata
Descriptor: Dehaloperoxidase A, GLYCEROL, PROTOPORPHYRIN IX CONTAINING FE, ...
Authors:Thompson, M.K, Plummer, A, Franzen, S.
Deposit date:2012-10-31
Release date:2013-05-01
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.22 Å)
Cite:Role of polarity of the distal pocket in the control of inhibitor binding in dehaloperoxidase-hemoglobin.
Biochemistry, 52, 2013
4TME
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BU of 4tme by Molmil
Crystal Structure of EutL from Clostridium Perfringens bound to ethanolamine
Descriptor: ETHANOLAMINE, Ethanolamine utilization protein EutL, SODIUM ION
Authors:Thompson, M.C, Yeates, T.O.
Deposit date:2014-06-01
Release date:2015-03-25
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:An allosteric model for control of pore opening by substrate binding in the EutL microcompartment shell protein.
Protein Sci., 24, 2015
4TLH
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BU of 4tlh by Molmil
Monoclinic Crystal Structure of EutL from Clostridium Perfringens
Descriptor: CHLORIDE ION, Ethanolamine utilization protein EutL, SODIUM ION
Authors:Thompson, M.C, Yeates, T.O.
Deposit date:2014-05-29
Release date:2015-06-10
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Microfocus diffraction from different regions of a protein crystal: structural variations and unit-cell polymorphism
Acta Crystallogr.,Sect.D, 2018
4TM6
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BU of 4tm6 by Molmil
Crystal Structure of EutL from Clostridium Perfringens at 298K
Descriptor: Ethanolamine utilization protein EutL, SODIUM ION
Authors:Thompson, M.C, Cascio, D, Yeates, T.O.
Deposit date:2014-05-31
Release date:2015-03-25
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.9002 Å)
Cite:An allosteric model for control of pore opening by substrate binding in the EutL microcompartment shell protein.
Protein Sci., 24, 2015

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