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PDB: 137 results

7EBM
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W363A mutant of Chitin-specific solute binding protein from Vibrio harveyi in complex with chitobiose.
Descriptor: 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, ...
Authors:Kitaoku, Y, Ubonbal, P, Tran, L.T, Robinson, R.C, Suginta, W.
Deposit date:2021-03-10
Release date:2021-09-08
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:A structural model for (GlcNAc) 2 translocation via a periplasmic chitooligosaccharide-binding protein from marine Vibrio bacteria.
J.Biol.Chem., 297, 2021
7WCE
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BU of 7wce by Molmil
Crystal structure of HIV-1 integrase catalytic core domain in complex with (2S)-2-(tert-Butoxy)-2-(10-fluoro-2-(2-hydroxy-4-methylphenyl)-1,4-dimethyl-5-(methylsulfonyl)-5,6-dihydrophenanthridin-3-yl)acetic acid
Descriptor: (2S)-2-[10-fluoranyl-1,4-dimethyl-2-(4-methyl-2-oxidanyl-phenyl)-5-methylsulfonyl-6H-phenanthridin-3-yl]-2-[(2-methylpropan-2-yl)oxy]ethanoic acid, GLYCEROL, Integrase catalytic, ...
Authors:Taoda, Y, Sekiguchi, Y.
Deposit date:2021-12-20
Release date:2022-09-07
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Discovery of tricyclic HIV-1 integrase-LEDGF/p75 allosteric inhibitors by intramolecular direct arylation reaction.
Bioorg.Med.Chem.Lett., 64, 2022
2EO7
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BU of 2eo7 by Molmil
Crystal structure of Cel44A, GH family 44 endoglucanase from Clostridium thermocellum
Descriptor: CALCIUM ION, CHLORIDE ION, Endoglucanase, ...
Authors:Kitao, Y, Karita, S, Watanabe, N, Sakka, K, Tanaka, I.
Deposit date:2007-03-29
Release date:2007-09-18
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Crystal structure of Cel44A, a glycoside hydrolase family 44 endoglucanase from Clostridium thermocellum.
J.Biol.Chem., 282, 2007
3BWO
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BU of 3bwo by Molmil
L-tryptophan aminotransferase
Descriptor: L-tryptophan aminotransferase
Authors:Ferrer, J.-L, Noel, J.P, Pojer, F, Bowman, M, Chory, J, Tao, Y.
Deposit date:2008-01-10
Release date:2009-03-03
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Rapid synthesis of auxin via a new tryptophan-dependent pathway is required for the shade avoidance response of plants
To be Published
2PGG
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BU of 2pgg by Molmil
Crystal Structure of a Birnavirus (IBDV) RNA-dependent RNA Polymerase VP1
Descriptor: RNA-directed RNA polymerase
Authors:Pan, J, Vakharia, V.N, Tao, Y.J.
Deposit date:2007-04-09
Release date:2007-05-22
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:The structure of a birnavirus polymerase reveals a distinct active site topology.
Proc.Natl.Acad.Sci.Usa, 104, 2007
7XJX
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BU of 7xjx by Molmil
The cryo-EM structure of Fe3+ induced alpha-syn fibril.
Descriptor: Alpha-synuclein
Authors:Zhao, Q.Y, Tao, Y.Q, Zhao, K, Tao, Y.Q, Li, D.
Deposit date:2022-04-18
Release date:2023-01-18
Last modified:2024-07-03
Method:ELECTRON MICROSCOPY (2.7 Å)
Cite:Structural Insights of Fe3+ Induced alpha-synuclein Fibrillation in Parkinson' Disease
J.Mol.Biol., 435, 2023
5W82
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BU of 5w82 by Molmil
Crystal structure of Orsay virus delta protein N-terminal fragment (aa 1-101)
Descriptor: Protein delta
Authors:Guo, Y.R, Tao, Y.J.
Deposit date:2017-06-21
Release date:2018-12-26
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:To be published
To be published
5WCO
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BU of 5wco by Molmil
Matrix Protein (M1) of Infectious Salmon Anaemia Virus
Descriptor: NS2
Authors:Zhang, W, Zheng, W, Toh, Y, Betancourt, M.A, Tu, J, Fan, Y, Vakharia, V, Liu, J, McNew, J.A, Jin, M, Tao, Y.J.
Deposit date:2017-07-01
Release date:2017-08-16
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.604 Å)
Cite:Crystal structure of an orthomyxovirus matrix protein reveals mechanisms for self-polymerization and membrane association.
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
6LKH
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BU of 6lkh by Molmil
Two-component system protein mediate signal transduction
Descriptor: 6-O-phosphono-alpha-D-glucopyranose, ABC transporter, solute-binding protein, ...
Authors:Wang, M, Tao, Y.
Deposit date:2019-12-19
Release date:2021-03-17
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (2.534 Å)
Cite:Interface switch mediates signal transmission in a two-component system.
Proc.Natl.Acad.Sci.USA, 117, 2020
8ZLI
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BU of 8zli by Molmil
BTA-2-bound E46K alpha-synuclein fibrils
Descriptor: Alpha-synuclein, ~{N},~{N}-dimethyl-4-(6-methyl-1,3-benzothiazol-2-yl)aniline
Authors:Liu, K.E, Tao, Y.Q, Li, D, Liu, C.
Deposit date:2024-05-20
Release date:2024-09-11
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Binding adaptability of chemical ligands to polymorphic alpha-synuclein amyloid fibrils.
Proc.Natl.Acad.Sci.USA, 121, 2024
6LKG
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BU of 6lkg by Molmil
two-component system protein mediate signal transduction
Descriptor: 6-O-phosphono-alpha-D-glucopyranose, ABC transporter, solute-binding protein, ...
Authors:Wang, M, Tao, Y.
Deposit date:2019-12-19
Release date:2020-12-02
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (1.948 Å)
Cite:Interface switch mediates signal transmission in a two-component system.
Proc.Natl.Acad.Sci.USA, 117, 2020
6LKK
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BU of 6lkk by Molmil
Two-component system protein mediate signal transduction
Descriptor: 6-O-phosphono-alpha-D-glucopyranose, ABC transporter, solute-binding protein
Authors:Wang, M, Tao, Y.
Deposit date:2019-12-19
Release date:2020-12-02
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (1.502 Å)
Cite:Interface switch mediates signal transmission in a two-component system.
Proc.Natl.Acad.Sci.USA, 117, 2020
6LKL
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BU of 6lkl by Molmil
Two-component system protein mediate signal transduction
Descriptor: ABC transporter, solute-binding protein, MALONIC ACID
Authors:Wang, M, Tao, Y.
Deposit date:2019-12-19
Release date:2020-12-02
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.213 Å)
Cite:Interface switch mediates signal transmission in a two-component system.
Proc.Natl.Acad.Sci.USA, 117, 2020
6LKI
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BU of 6lki by Molmil
Two-component system protein mediate signal transduction
Descriptor: ABC transporter, solute-binding protein, MALONIC ACID, ...
Authors:Wang, M, Tao, Y.
Deposit date:2019-12-19
Release date:2020-12-02
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (1.781 Å)
Cite:Interface switch mediates signal transmission in a two-component system.
Proc.Natl.Acad.Sci.USA, 117, 2020
6LKJ
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BU of 6lkj by Molmil
Two-component system protein mediate signal transduction
Descriptor: 6-O-phosphono-beta-D-galactopyranose, ABC transporter, solute-binding protein
Authors:Wang, M, Tao, Y.
Deposit date:2019-12-19
Release date:2020-12-02
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.004 Å)
Cite:Interface switch mediates signal transmission in a two-component system.
Proc.Natl.Acad.Sci.USA, 117, 2020
3ES5
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BU of 3es5 by Molmil
Crystal Structure of Partitivirus (PsV-F)
Descriptor: Putative capsid protein
Authors:Pan, J, Dong, L, Lin, L, Ochoa, W.F, Sinkovits, R.S, Havens, W.M, Nibert, M.L, Baker, T.S, Ghabrial, S.A, Tao, Y.J.
Deposit date:2008-10-03
Release date:2009-03-10
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Atomic structure reveals the unique capsid organization of a dsRNA virus.
Proc.Natl.Acad.Sci.USA, 106, 2009
5JIE
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BU of 5jie by Molmil
Crystal structure of the Orsay virus delta protein N-terminal fragment (aa 1~66)
Descriptor: Protein delta
Authors:Fan, Y, Guo, Y, Zhong, W, Tao, Y.J.
Deposit date:2016-04-22
Release date:2017-02-22
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (2.1374 Å)
Cite:Structure of a pentameric virion-associated fiber with a potential role in Orsay virus entry to host cells.
PLoS Pathog., 13, 2017
1JNB
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BU of 1jnb by Molmil
CONNECTOR PROTEIN FROM BACTERIOPHAGE PHI29
Descriptor: UPPER COLLAR PROTEIN
Authors:Simpson, A.A, Leiman, P.G, Tao, Y, He, Y, Badasso, M.O, Jardine, P.J, Anderson, D.L, Rossmann, M.G.
Deposit date:2001-07-23
Release date:2001-08-15
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Structure determination of the head-tail connector of bacteriophage phi29.
Acta Crystallogr.,Sect.D, 57, 2001
8J7N
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BU of 8j7n by Molmil
The cryo-EM structure of Fe3+ induced alpha-syn fibril.
Descriptor: Transmembrane protein 106B
Authors:Zhao, Q.Y, Tao, Y.Q, Yan, F, Liu, C, Li, D.
Deposit date:2023-04-27
Release date:2024-05-01
Last modified:2024-10-23
Method:ELECTRON MICROSCOPY (3 Å)
Cite:The cryo-EM structure of PBB3 bound TMEM106B fibril.
To Be Published
8J7P
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BU of 8j7p by Molmil
The cryo-EM structure of PiB bound TMEM106B fibril.
Descriptor: Transmembrane protein 106B
Authors:Zhao, Q.Y, Tao, Y.Q, Yan, F, Liu, C, Li, D.
Deposit date:2023-04-27
Release date:2024-05-01
Last modified:2024-10-16
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:The cryo-EM structure of PiB bound TMEM106B fibril.
To Be Published
8E6O
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BU of 8e6o by Molmil
Crystal structure of human GCN5 histone acetyltransferase domain
Descriptor: Histone acetyltransferase KAT2A, S-{(3S,5R,9R)-1-[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-4-hydroxy-3-(phosphonooxy)oxolan-2-yl]-3,5,9-trihydroxy-8,8-dimethyl-3,5,10,14-tetraoxo-2,4,6-trioxa-11,15-diaza-3lambda~5~,5lambda~5~-diphosphaheptadecan-17-yl} (2R)-2-hydroxypropanethioate
Authors:Lu, X.T, Tao, Y.J.
Deposit date:2022-08-23
Release date:2024-02-28
Method:X-RAY DIFFRACTION (2.37 Å)
Cite:Crystal structure of human GCN5 histone acetyltransferase domain
To Be Published
1IJG
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BU of 1ijg by Molmil
Structure of the Bacteriophage phi29 Head-Tail Connector Protein
Descriptor: UPPER COLLAR PROTEIN
Authors:Simpson, A.A, Leiman, P.G, Tao, Y, He, Y, Badasso, M, Jardine, P.J, Anderson, D.L, Rossmann, M.G.
Deposit date:2001-04-26
Release date:2001-05-09
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Structure determination of the head-tail connector of bacteriophage phi29.
Acta Crystallogr.,Sect.D, 57, 2001
3BWN
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BU of 3bwn by Molmil
L-tryptophan aminotransferase
Descriptor: 4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOSPHATE, L-tryptophan aminotransferase, PHENYLALANINE, ...
Authors:Ferrer, J.-L, Noel, J.P, Pojer, F, Bowman, M, Chory, J, Tao, Y.
Deposit date:2008-01-10
Release date:2008-04-29
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Rapid synthesis of auxin via a new tryptophan-dependent pathway is required for shade avoidance in plants
Cell(Cambridge,Mass.), 133, 2008
4IRY
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BU of 4iry by Molmil
Influenza A virus tail-loop free nucleoprotein at 2.8 A resolution
Descriptor: Nucleocapsid protein
Authors:Ye, Q, Mata, D.A, Tao, Y.J.
Deposit date:2013-01-15
Release date:2013-02-13
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Biochemical and structural evidence in support of a coherent model for the formation of the double-helical influenza a virus ribonucleoprotein.
MBio, 4, 2012
5CTH
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BU of 5cth by Molmil
The 3.7 A resolution structure of a eukaryotic SWEET transporter
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, 3,6,9,12,15,18,21,24-OCTAOXAHEXACOSAN-1-OL, Bidirectional sugar transporter SWEET2b, ...
Authors:Feng, L, Tao, Y, Perry, K.
Deposit date:2015-07-24
Release date:2015-10-28
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (3.69 Å)
Cite:Structure of a eukaryotic SWEET transporter in a homotrimeric complex.
Nature, 527, 2015

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