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PDB: 197 件
7F91
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SeMet derivative of Thrombocorticin
分子名称: Thrombocorticin
著者Kageyama, H, Onodera, K, Sakai, R, Tanaka, Y.
登録日2021-07-03
公開日2022-07-06
最終更新日2023-07-19
実験手法X-RAY DIFFRACTION (1.401 Å)
主引用文献A marine sponge-derived lectin reveals hidden pathway for thrombopoietin receptor activation.
Nat Commun, 13, 2022
7FBL
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Thrombocorticin in complex with Ca2+ and mannose
分子名称: CALCIUM ION, Thrombocorticin, alpha-D-mannopyranose
著者Kageyama, H, Onodera, K, Sakai, R, Tanaka, Y.
登録日2021-07-11
公開日2022-07-13
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.419 Å)
主引用文献A marine sponge-derived lectin reveals hidden pathway for thrombopoietin receptor activation.
Nat Commun, 13, 2022
2ZKL
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BU of 2zkl by Molmil
Crystal Structure of capsular polysaccharide assembling protein CapF from staphylococcus aureus
分子名称: Capsular polysaccharide synthesis enzyme Cap5F, GLYCEROL, ZINC ION
著者Miyafusa, T, Tanaka, Y, Yao, M, Tanaka, I, Tsumoto, K.
登録日2008-03-25
公開日2009-03-31
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.61 Å)
主引用文献Crystal structure of capsular polysaccharide assembling protein from Staphylococcus aureus
to be published
2DG7
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Crystal structure of the putative transcriptional regulator SCO0337 from Streptomyces coelicolor A3(2)
分子名称: putative transcriptional regulator
著者Hayashi, T, Tanaka, Y, Sakai, N, Yao, M, Tamura, T, Tanaka, I.
登録日2006-03-08
公開日2007-03-13
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Crystal structure of the putative transcriptional regulator SCO0337 from Streptomyces coelicolor A3(2)
To be Published
3W9Z
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Crystal structure of DusC
分子名称: FLAVIN MONONUCLEOTIDE, tRNA-dihydrouridine synthase C
著者Chen, M, Yu, J, Tanaka, Y, Tanaka, I, Yao, M.
登録日2013-04-19
公開日2013-07-31
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Structure of dihydrouridine synthase C (DusC) from Escherichia coli
Acta Crystallogr.,Sect.F, 69, 2013
2DG6
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Crystal structure of the putative transcriptional regulator SCO5550 from Streptomyces coelicolor A3(2)
分子名称: putative transcriptional regulator
著者Hayashi, T, Tanaka, Y, Sakai, N, Yao, M, Tamura, T, Tanaka, I.
登録日2006-03-08
公開日2007-03-13
最終更新日2018-03-28
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Structural and genomic DNA analysis of a putative transcription factor SCO5550 from Streptomyces coelicolor A3(2): regulating the expression of gene sco5551 as a transcriptional activator with a novel dimer shape
Biochem. Biophys. Res. Commun., 435, 2013
1IU3
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BU of 1iu3 by Molmil
CRYSTAL STRUCTURE OF THE E.COLI SEQA PROTEIN COMPLEXED WITH HEMIMETHYLATED DNA
分子名称: 5'-D(*AP*AP*GP*GP*AP*TP*CP*CP*AP*A)-3', 5'-D(*TP*TP*GP*GP*AP*TP*CP*CP*TP*T)-3', SeqA protein
著者Fujikawa, N, Kurumizaka, H, Nureki, O, Tanaka, Y, Yamazoe, M, Hiraga, S, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2002-02-26
公開日2003-06-17
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Structural and biochemical analyses of hemimethylated DNA binding by the SeqA protein.
Nucleic Acids Res., 32, 2004
1J3E
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Crystal Structure of the E.coli SeqA protein complexed with N6-methyladenine- guanine mismatch DNA
分子名称: 5'-D(*AP*AP*GP*GP*(6MA)P*TP*CP*CP*AP*A)-3', 5'-D(*TP*TP*GP*GP*AP*GP*CP*CP*TP*T)-3', SeqA protein
著者Fujikawa, N, Kurumizaka, H, Nureki, O, Tanaka, Y, Yamazoe, M, Hiraga, S, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2003-01-24
公開日2004-05-18
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Structural and biochemical analyses of hemimethylated DNA binding by the SeqA protein
Nucleic Acids Res., 32, 2004
1ITT
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BU of 1itt by Molmil
Average Crystal Structure of (Pro-Pro-Gly)9 at 1.0 angstroms Resolution
分子名称: COLLAGEN TRIPLE HELIX
著者Hongo, C, Nagarajan, V, Noguchi, K, Kamitori, S, Okuyama, K, Tanaka, Y, Nishino, N.
登録日2002-02-03
公開日2003-02-03
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (1 Å)
主引用文献Average Crystal Structure of (Pro-Pro-Gly)9 at 1.0 angstroms Resolution
Plym.J., 33, 2001
3VZR
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Crystal structure of T173S mutant of PhaB from Ralstonia eutropha
分子名称: Acetoacetyl-CoA reductase
著者Ikeda, K, Tanaka, Y, Tanaka, I, Yao, M.
登録日2012-10-15
公開日2013-08-28
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.901 Å)
主引用文献Directed evolution and structural analysis of NADPH-dependent Acetoacetyl Coenzyme A (Acetoacetyl-CoA) reductase from Ralstonia eutropha reveals two mutations responsible for enhanced kinetics
Appl.Environ.Microbiol., 79, 2013
1UFI
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Crystal structure of the dimerization domain of human CENP-B
分子名称: Major centromere autoantigen B
著者Tawaramoto, M.S, Kurumizaka, H, Tanaka, Y, Park, S.-Y, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2003-05-30
公開日2004-02-17
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (1.65 Å)
主引用文献Crystal structure of the human centromere protein B (CENP-B) dimerization domain at 1.65-A resolution
J.Biol.Chem., 278, 2003
3VZQ
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BU of 3vzq by Molmil
Crystal structure of Q47L mutant of PhaB from Ralstonia eutropha
分子名称: Acetoacetyl-CoA reductase
著者Ikeda, K, Tanaka, Y, Tanaka, I, Yao, M.
登録日2012-10-15
公開日2013-08-28
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Directed evolution and structural analysis of NADPH-dependent Acetoacetyl Coenzyme A (Acetoacetyl-CoA) reductase from Ralstonia eutropha reveals two mutations responsible for enhanced kinetics
Appl.Environ.Microbiol., 79, 2013
2D6Y
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BU of 2d6y by Molmil
Crystal Structure of transcriptional factor SCO4008 from Streptomyces coelicolor A3(2)
分子名称: L(+)-TARTARIC ACID, putative tetR family regulatory protein
著者Hayashi, T, Tanaka, Y, Sakai, N, Yao, M, Tamura, T, Tanaka, I.
登録日2005-11-15
公開日2006-10-31
最終更新日2013-09-04
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献SCO4008, a Putative TetR Transcriptional Repressor from Streptomyces coelicolor A3(2), Regulates Transcription of sco4007 by Multidrug Recognition.
J.Mol.Biol., 425, 2013
2PCM
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BU of 2pcm by Molmil
Crystal structure of PH0725 from Pyrococcus horikoshii OT3
分子名称: DIPHTHINE SYNTHASE, GLYCEROL, S-ADENOSYL-L-HOMOCYSTEINE
著者Yamamoto, H, Taketa, M, Tanaka, Y, Matsuura, Y, Kunishima, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2007-03-30
公開日2007-10-02
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Crystal structure of PH0725 from Pyrococcus horikoshii OT3
To be Published
7EQE
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BU of 7eqe by Molmil
Crystal Structure of a transcription factor
分子名称: TetR/AcrR family transcriptional regulator
著者Uehara, S, Tsugita, A, Matsui, T, Yokoyama, T, Ostash, I, Ostash, B, Tanaka, Y.
登録日2021-05-01
公開日2022-04-27
最終更新日2022-10-19
実験手法X-RAY DIFFRACTION (2.399 Å)
主引用文献The carbohydrate tail of landomycin A is responsible for its interaction with the repressor protein LanK.
Febs J., 289, 2022
3VSE
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BU of 3vse by Molmil
Crystal structure of methyltransferase
分子名称: Putative uncharacterized protein, S-ADENOSYL-L-HOMOCYSTEINE
著者Kita, S, Tanaka, Y, Yao, M, Tanaka, I.
登録日2012-04-25
公開日2013-04-10
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2.099 Å)
主引用文献Crystal structure of a putative methyltransferase SAV1081 from Staphylococcus aureus
Protein Pept.Lett., 20, 2012
3VZP
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BU of 3vzp by Molmil
Crystal structure of PhaB from Ralstonia eutropha
分子名称: 1,4-DIETHYLENE DIOXIDE, Acetoacetyl-CoA reductase, GLYCEROL, ...
著者Ikeda, K, Tanaka, Y, Tanaka, I, Yao, M.
登録日2012-10-15
公開日2013-08-28
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.792 Å)
主引用文献Directed evolution and structural analysis of NADPH-dependent Acetoacetyl Coenzyme A (Acetoacetyl-CoA) reductase from Ralstonia eutropha reveals two mutations responsible for enhanced kinetics
Appl.Environ.Microbiol., 79, 2013
3VZS
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BU of 3vzs by Molmil
Crystal structure of PhaB from Ralstonia eutropha in complex with Acetoacetyl-CoA and NADP
分子名称: ACETOACETYL-COENZYME A, Acetoacetyl-CoA reductase, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, ...
著者Ikeda, K, Tanaka, Y, Tanaka, I, Yao, M.
登録日2012-10-15
公開日2013-08-28
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.14 Å)
主引用文献Directed evolution and structural analysis of NADPH-dependent Acetoacetyl Coenzyme A (Acetoacetyl-CoA) reductase from Ralstonia eutropha reveals two mutations responsible for enhanced kinetics
Appl.Environ.Microbiol., 79, 2013
7WAX
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BU of 7wax by Molmil
MurJ inward occluded form
分子名称: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, (4S)-2-METHYL-2,4-PENTANEDIOL, lipid II flippase MurJ
著者Tsukazaki, T, Kohga, H, Tanaka, Y, Yoshikaie, K, Taniguchi, K, Fujimoto, K.
登録日2021-12-15
公開日2022-06-01
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (2.35 Å)
主引用文献Crystal structure of the lipid flippase MurJ in a "squeezed" form distinct from its inward- and outward-facing forms.
Structure, 30, 2022
3W9V
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Crystal structure of refolded DING protein
分子名称: GLYCEROL, PHOSPHATE ION, Phosphate-binding protein
著者Gai, Z.Q, Nakamura, A, Tanaka, Y, Hirano, N, Tanaka, I, Yao, M.
登録日2013-04-17
公開日2013-10-30
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.031 Å)
主引用文献Crystal structure analysis, overexpression and refolding behaviour of a DING protein with single mutation.
J.SYNCHROTRON RADIAT., 20, 2013
7WAW
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MurJ inward closed form
分子名称: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, lipid II flippase MurJ
著者Tsukazaki, T, Kohga, H, Tanaka, Y, Yoshikaie, K, Taniguchi, K, Fujimoto, K.
登録日2021-12-15
公開日2022-06-01
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Crystal structure of the lipid flippase MurJ in a "squeezed" form distinct from its inward- and outward-facing forms.
Structure, 30, 2022
7WAG
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Crystal structure of MurJ squeezed form
分子名称: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, DI(HYDROXYETHYL)ETHER, Lipid II flippase MurJ
著者Tsukazaki, T, Kohga, H, Tanaka, Y, Yoshikaie, K, Taniguchi, K, Fujimoto, K.
登録日2021-12-14
公開日2022-06-01
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.55 Å)
主引用文献Crystal structure of the lipid flippase MurJ in a "squeezed" form distinct from its inward- and outward-facing forms.
Structure, 30, 2022
3W9W
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Crystal structure of DING protein
分子名称: DING protein, GLYCEROL, PHOSPHATE ION
著者Gai, Z.Q, Nakamura, A, Tanaka, Y, Hirano, N, Tanaka, I, Yao, M.
登録日2013-04-17
公開日2013-10-30
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.35 Å)
主引用文献Crystal structure analysis, overexpression and refolding behaviour of a DING protein with single mutation.
J.SYNCHROTRON RADIAT., 20, 2013
3B0V
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BU of 3b0v by Molmil
tRNA-dihydrouridine synthase from Thermus thermophilus in complex with tRNA
分子名称: FLAVIN MONONUCLEOTIDE, tRNA, tRNA-dihydrouridine synthase
著者Yu, F, Tanaka, Y, Yamashita, K, Nakamura, A, Yao, M, Tanaka, I.
登録日2011-06-14
公開日2011-12-14
最終更新日2017-10-11
実験手法X-RAY DIFFRACTION (3.51 Å)
主引用文献Molecular basis of dihydrouridine formation on tRNA
Proc.Natl.Acad.Sci.USA, 108, 2011
3B0P
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tRNA-dihydrouridine synthase from Thermus thermophilus
分子名称: FLAVIN MONONUCLEOTIDE, tRNA-dihydrouridine synthase
著者Yu, F, Tanaka, Y, Yamashita, K, Nakamura, A, Yao, M, Tanaka, I.
登録日2011-06-12
公開日2011-12-14
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Molecular basis of dihydrouridine formation on tRNA
Proc.Natl.Acad.Sci.USA, 108, 2011

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