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PDB: 485 results

7VJE
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class II photolyase MmCPDII semiquinone to fully reduced TR-SFX studies (300 ns time-point)
Descriptor: 2,3-DIHYDROXY-1,4-DITHIOBUTANE, DNA photolyase, FLAVIN-ADENINE DINUCLEOTIDE, ...
Authors:Maestre-Reyna, M, Yang, C.-H, Huang, W.-C, Nango, E, Ngura Putu, E.P.G, Franz-Badur, S, Wu, W.-J, Wu, H.-Y, Wang, P.-H, Hosokawa, Y, Saft, M, Emmerich, H.-J, Liao, J.-H, Lee, C.-C, Huang, K.-F, Chang, Y.-K, Weng, J.-H, Royant, A, Gad, W, Pang, A.H, Chang, C.-W, Sugahara, M, Owada, S, Joti, Y, Yamashita, A, Tanaka, R, Tanaka, T, Luo, F.J, Tono, K, Kiontke, S, Yamamoto, J, Iwata, S, Essen, L.-O, Bessho, Y, Tsai, M.-D.
Deposit date:2021-09-28
Release date:2022-03-09
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Serial crystallography captures dynamic control of sequential electron and proton transfer events in a flavoenzyme.
Nat.Chem., 14, 2022
7VJ0
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class II photolyase MmCPDII oxidized to semiquinone TR-SFX studies (1 us time-point)
Descriptor: DNA photolyase, FLAVIN-ADENINE DINUCLEOTIDE, SULFATE ION
Authors:Maestre-Reyna, M, Yang, C.-H, Huang, W.-C, Nango, E, Ngura Putu, E.P.G, Franz-Badur, S, Wu, W.-J, Wu, H.-Y, Wang, P.-H, Hosokawa, Y, Saft, M, Emmerich, H.-J, Liao, J.-H, Lee, C.-C, Huang, K.-F, Chang, Y.-K, Weng, J.-H, Royant, A, Gad, W, Pang, A.H, Chang, C.-W, Sugahara, M, Owada, S, Joti, Y, Yamashita, A, Tanaka, R, Tanaka, T, Luo, F.J, Tono, K, Kiontke, S, Yamamoto, J, Iwata, S, Essen, L.-O, Bessho, Y, Tsai, M.-D.
Deposit date:2021-09-28
Release date:2022-03-09
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Serial crystallography captures dynamic control of sequential electron and proton transfer events in a flavoenzyme.
Nat.Chem., 14, 2022
7VJA
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class II photolyase MmCPDII semiquinone to fully reduced TR-SFX studies (10 ns time-point)
Descriptor: 2,3-DIHYDROXY-1,4-DITHIOBUTANE, DNA photolyase, FLAVIN-ADENINE DINUCLEOTIDE, ...
Authors:Maestre-Reyna, M, Yang, C.-H, Huang, W.-C, Nango, E, Ngura Putu, E.P.G, Franz-Badur, S, Wu, W.-J, Wu, H.-Y, Wang, P.-H, Hosokawa, Y, Saft, M, Emmerich, H.-J, Liao, J.-H, Lee, C.-C, Huang, K.-F, Chang, Y.-K, Weng, J.-H, Royant, A, Gad, W, Pang, A.H, Chang, C.-W, Sugahara, M, Owada, S, Joti, Y, Yamashita, A, Tanaka, R, Tanaka, T, Luo, F.J, Tono, K, Kiontke, S, Yamamoto, J, Iwata, S, Essen, L.-O, Bessho, Y, Tsai, M.-D.
Deposit date:2021-09-28
Release date:2022-03-09
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Serial crystallography captures dynamic control of sequential electron and proton transfer events in a flavoenzyme.
Nat.Chem., 14, 2022
7VIX
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BU of 7vix by Molmil
class II photolyase MmCPDII oxidized to semiquinone TR-SFX studies (10 ns time-point)
Descriptor: DNA photolyase, FLAVIN-ADENINE DINUCLEOTIDE, SULFATE ION
Authors:Maestre-Reyna, M, Yang, C.-H, Huang, W.-C, Nango, E, Ngura Putu, E.P.G, Franz-Badur, S, Wu, W.-J, Wu, H.-Y, Wang, P.-H, Hosokawa, Y, Saft, M, Emmerich, H.-J, Liao, J.-H, Lee, C.-C, Huang, K.-F, Chang, Y.-K, Weng, J.-H, Royant, A, Gad, W, Pang, A.H, Chang, C.-W, Sugahara, M, Owada, S, Joti, Y, Yamashita, A, Tanaka, R, Tanaka, T, Luo, F.J, Tono, K, Kiontke, S, Yamamoto, J, Iwata, S, Essen, L.-O, Bessho, Y, Tsai, M.-D.
Deposit date:2021-09-28
Release date:2022-03-09
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Serial crystallography captures dynamic control of sequential electron and proton transfer events in a flavoenzyme.
Nat.Chem., 14, 2022
7VJJ
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class II photolyase MmCPDII semiquinone to fully reduced TR-SFX studies (30 us time-point)
Descriptor: 2,3-DIHYDROXY-1,4-DITHIOBUTANE, DNA photolyase, FLAVIN-ADENINE DINUCLEOTIDE, ...
Authors:Maestre-Reyna, M, Yang, C.-H, Huang, W.-C, Nango, E, Ngura Putu, E.P.G, Franz-Badur, S, Wu, W.-J, Wu, H.-Y, Wang, P.-H, Hosokawa, Y, Saft, M, Emmerich, H.-J, Liao, J.-H, Lee, C.-C, Huang, K.-F, Chang, Y.-K, Weng, J.-H, Royant, A, Gad, W, Pang, A.H, Chang, C.-W, Sugahara, M, Owada, S, Joti, Y, Yamashita, A, Tanaka, R, Tanaka, T, Luo, F.J, Tono, K, Kiontke, S, Yamamoto, J, Iwata, S, Essen, L.-O, Bessho, Y, Tsai, M.-D.
Deposit date:2021-09-28
Release date:2022-03-09
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Serial crystallography captures dynamic control of sequential electron and proton transfer events in a flavoenzyme.
Nat.Chem., 14, 2022
1YO4
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BU of 1yo4 by Molmil
Solution Structure of the SARS Coronavirus ORF 7a coded X4 protein
Descriptor: Hypothetical protein X4
Authors:Haenel, K, Stangler, T, Stoldt, M, Willbold, D.
Deposit date:2005-01-26
Release date:2006-01-17
Last modified:2022-03-02
Method:SOLUTION NMR
Cite:Solution structure of the X4 protein coded by the SARS related coronavirus reveals an immunoglobulin like fold and suggests a binding activity to integrin I domains.
J.Biomed.Sci., 13, 2006
5YAE
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BU of 5yae by Molmil
Ferulic acid esterase from Streptomyces cinnamoneus at 2.4 A resolution
Descriptor: ACETATE ION, Esterase, SULFATE ION
Authors:Tamura, H, Uraji, M, Mizohata, E, Ogawa, K, Inoue, T, Hatanaka, T.
Deposit date:2017-08-31
Release date:2017-12-06
Last modified:2018-01-31
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Loop of Streptomyces Feruloyl Esterase Plays an Important Role in the Enzyme's Catalyzing the Release of Ferulic Acid from Biomass.
Appl. Environ. Microbiol., 84, 2018
4X69
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Crystal structure of OP0595 complexed with CTX-M-44
Descriptor: (2S,5R)-N-(2-aminoethoxy)-1-formyl-5-[(sulfooxy)amino]piperidine-2-carboxamide, 1,2-ETHANEDIOL, Beta-lactamase Toho-1
Authors:Yamada, M, Watanabe, T.
Deposit date:2014-12-07
Release date:2015-07-01
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.42 Å)
Cite:OP0595, a new diazabicyclooctane: mode of action as a serine beta-lactamase inhibitor, antibiotic and beta-lactam 'enhancer'
J.Antimicrob.Chemother., 70, 2015
5YAL
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BU of 5yal by Molmil
Ferulic acid esterase from Streptomyces cinnamoneus at 1.5 A resolution
Descriptor: ACETATE ION, Esterase, GLYCEROL, ...
Authors:Tamura, H, Uraji, M, Mizohata, E, Ogawa, K, Inoue, T, Hatanaka, T.
Deposit date:2017-09-01
Release date:2017-12-06
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Loop of Streptomyces Feruloyl Esterase Plays an Important Role in the Enzyme's Catalyzing the Release of Ferulic Acid from Biomass.
Appl. Environ. Microbiol., 84, 2018
6VZW
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BU of 6vzw by Molmil
TTLL6 bound to the initiation analog
Descriptor: (2~{S})-2-[[[(3~{R})-3-acetamido-4-(ethylamino)-4-oxidanylidene-butyl]-phosphonooxy-phosphoryl]methyl]pentanedioic acid, ADENOSINE-5'-DIPHOSPHATE, GLYCEROL, ...
Authors:Mahalingan, K.K, Keenen, E.K, Strickland, M, Li, Y, Liu, Y, Ball, H.L, Tanner, T.E, Tjandra, N, Roll-Mecak, A.
Deposit date:2020-02-28
Release date:2020-08-12
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural basis for polyglutamate chain initiation and elongation by TTLL family enzymes.
Nat.Struct.Mol.Biol., 27, 2020
8BDQ
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BU of 8bdq by Molmil
Crystal structure of Bacteroides ovatus CP926 PL38 alginate lyase
Descriptor: Alginate lyase family protein, SULFATE ION
Authors:Roenne, M.E, Tandrup, T, Wilkens, C.
Deposit date:2022-10-19
Release date:2023-08-30
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.11 Å)
Cite:Three alginate lyases provide a new gut Bacteroides ovatus isolate with the ability to grow on alginate.
Appl.Environ.Microbiol., 89, 2023
8BDD
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BU of 8bdd by Molmil
Crystal structure of Bacteroides ovatus CP926 PL17 alginate lyase
Descriptor: Alginate lyase family protein, NICKEL (II) ION
Authors:Roenne, M.E, Tandrup, T, Wilkens, C.
Deposit date:2022-10-19
Release date:2023-08-30
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.61 Å)
Cite:Three alginate lyases provide a new gut Bacteroides ovatus isolate with the ability to grow on alginate.
Appl.Environ.Microbiol., 89, 2023
7BA4
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BU of 7ba4 by Molmil
Structure of Cystathionine gamma-lyase from Pseudomonas aeruginosa
Descriptor: Cystathionine gamma-lyase, PYRIDOXAL-5'-PHOSPHATE
Authors:Fernandez-Rodriguez, C, Oyenarte, I, Gonzalez-Recio, I, Majtan, T, Astegno, A, Martinez-Cruz, L.A.
Deposit date:2020-12-15
Release date:2021-09-29
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure of Cystathionine gamma-lyase from Pseudomonas aeruginosa
To Be Published
6JZI
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BU of 6jzi by Molmil
Structure of hen egg-white lysozyme obtained from SFX experiments under atmospheric pressure
Descriptor: CHLORIDE ION, Lysozyme C, SODIUM ION
Authors:Nango, E, Sugahara, M, Nakane, T, Tanaka, T, Iwata, S.
Deposit date:2019-05-02
Release date:2019-10-30
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2 Å)
Cite:High-viscosity sample-injection device for serial femtosecond crystallography at atmospheric pressure.
J.Appl.Crystallogr., 52, 2019
2ZCC
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BU of 2zcc by Molmil
Ubiquitin crystallized under high pressure
Descriptor: Ubiquitin, ZINC ION
Authors:Kitahara, R, Tanaka, T, Yamashita, M, Araya, K, Yokoyama, S, Akasaka, K, Taniguchi, Y, Kato, M.
Deposit date:2007-11-08
Release date:2007-11-20
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Structure of Ubiquitin crystallized under high pressure
to be published
2DWL
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BU of 2dwl by Molmil
Crystal structure of the PriA protein complexed with oligonucleotides
Descriptor: 5'-D(*AP*(DC))-3', Primosomal protein N
Authors:Sasaki, K, Ose, T, Tanaka, T, Masai, H, Maenaka, K, Kohda, D.
Deposit date:2006-08-15
Release date:2006-11-07
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Structural basis of the 3'-end recognition of a leading strand in stalled replication forks by PriA.
EMBO J., 26, 2007
2DWM
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BU of 2dwm by Molmil
Crystal structure of the PriA protein complexed with oligonucleotides
Descriptor: 5'-D(*AP*T)-3', Primosomal protein N
Authors:Sasaki, K, Ose, T, Tanaka, T, Masai, H, Maenaka, K, Kohda, D.
Deposit date:2006-08-15
Release date:2006-11-07
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (3.15 Å)
Cite:Structural basis of the 3'-end recognition of a leading strand in stalled replication forks by PriA.
EMBO J., 26, 2007
1Z0Q
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BU of 1z0q by Molmil
Aqueous Solution Structure of the Alzheimer's Disease Abeta Peptide (1-42)
Descriptor: Alzheimer's disease amyloid
Authors:Tomaselli, S, Esposito, V, Vangone, P, van Nuland, N.A, Bonvin, A.M, Guerrini, R, Tancredi, T, Temussi, P.A, Picone, D.
Deposit date:2005-03-02
Release date:2006-05-23
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:The alpha-to-beta Conformational Transition of Alzheimer's Abeta-(1-42) Peptide in Aqueous Media is Reversible: A Step by Step Conformational Analysis Suggests the Location of beta Conformation Seeding
Chembiochem, 7, 2006
1Z0E
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BU of 1z0e by Molmil
Crystal Structure of A. fulgidus Lon proteolytic domain
Descriptor: Putative protease La homolog type
Authors:Botos, I, Melnikov, E.E, Cherry, S, Kozlov, S, Makhovskaya, O.V, Tropea, J.E, Gustchina, A, Rotanova, T.V, Wlodawer, A.
Deposit date:2005-03-01
Release date:2005-08-02
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Atomic-resolution Crystal Structure of the Proteolytic Domain of Archaeoglobus fulgidus Lon Reveals the Conformational Variability in the Active Sites of Lon Proteases
J.Mol.Biol., 351, 2005
1Z0C
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BU of 1z0c by Molmil
Crystal Structure of A. fulgidus Lon proteolytic domain D508A mutant
Descriptor: Putative protease La homolog type
Authors:Botos, I, Melnikov, E.E, Cherry, S, Kozlov, S, Makhovskaya, O.V, Tropea, J.E, Gustchina, A, Rotanova, T.V, Wlodawer, A.
Deposit date:2005-03-01
Release date:2005-08-02
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Atomic-resolution Crystal Structure of the Proteolytic Domain of Archaeoglobus fulgidus Lon Reveals the Conformational Variability in the Active Sites of Lon Proteases
J.Mol.Biol., 351, 2005
1Z0G
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BU of 1z0g by Molmil
Crystal Structure of A. fulgidus Lon proteolytic domain
Descriptor: Putative protease La homolog type
Authors:Botos, I, Melnikov, E.E, Cherry, S, Kozlov, S, Makhovskaya, O.V, Tropea, J.E, Gustchina, A, Rotanova, T.V, Wlodawer, A.
Deposit date:2005-03-01
Release date:2005-08-02
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.27 Å)
Cite:Atomic-resolution Crystal Structure of the Proteolytic Domain of Archaeoglobus fulgidus Lon Reveals the Conformational Variability in the Active Sites of Lon Proteases
J.Mol.Biol., 351, 2005
1Z0W
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BU of 1z0w by Molmil
Crystal Structure of A. fulgidus Lon proteolytic domain at 1.2A resolution
Descriptor: CALCIUM ION, Putative protease La homolog type
Authors:Botos, I, Melnikov, E.E, Cherry, S, Kozlov, S, Makhovskaya, O.V, Tropea, J.E, Gustchina, A, Rotanova, T.V, Wlodawer, A.
Deposit date:2005-03-02
Release date:2005-08-02
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:Atomic-resolution Crystal Structure of the Proteolytic Domain of Archaeoglobus fulgidus Lon Reveals the Conformational Variability in the Active Sites of Lon Proteases
J.Mol.Biol., 351, 2005
1Z0B
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BU of 1z0b by Molmil
Crystal Structure of A. fulgidus Lon proteolytic domain E506A mutant
Descriptor: CALCIUM ION, Putative protease La homolog type
Authors:Botos, I, Melnikov, E.E, Cherry, S, Kozlov, S, Makhovskaya, O.V, Tropea, J.E, Gustchina, A, Rotanova, T.V, Wlodawer, A.
Deposit date:2005-03-01
Release date:2005-08-02
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Atomic-resolution Crystal Structure of the Proteolytic Domain of Archaeoglobus fulgidus Lon Reveals the Conformational Variability in the Active Sites of Lon Proteases
J.Mol.Biol., 351, 2005
4Y7E
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BU of 4y7e by Molmil
Crystal structure of beta-mannanase from Streptomyces thermolilacinus with mannohexaose
Descriptor: CALCIUM ION, Endoglucanase, GLYCEROL, ...
Authors:Kumagai, Y, Yamashita, K, Okuyama, M, Hatanaka, T, Yao, M, Kimura, A.
Deposit date:2015-02-14
Release date:2015-09-23
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:The loop structure of Actinomycete glycoside hydrolase family 5 mannanases governs substrate recognition
Febs J., 282, 2015
5X7Y
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BU of 5x7y by Molmil
Crystal Structure of the Dog Lipocalin Allergen Can f 6
Descriptor: DI(HYDROXYETHYL)ETHER, Lipocalin-Can f 6 allergen
Authors:Yamamoto, K, Otani, T, Sugiura, K, Nakatsuji, M, Nishimura, S, Inui, T.
Deposit date:2017-02-28
Release date:2018-04-04
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Crystal structure of the dog allergen Can f 6 and structure-based implications of its cross-reactivity with the cat allergen Fel d 4.
Sci Rep, 9, 2019

222036

數據於2024-07-03公開中

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