Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 1033 results

2O3G
DownloadVisualize
BU of 2o3g by Molmil
Structural Genomics, the crystal structure of a conserved putative domain from Neisseria meningitidis MC58
Descriptor: 1,2-ETHANEDIOL, Putative protein
Authors:Tan, K, Volkart, L, Gu, M, Joachimiak, A, Midwest Center for Structural Genomics (MCSG)
Deposit date:2006-12-01
Release date:2007-01-02
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:The crystal structure of a conserved putative domain from Neisseria meningitidis MC58
To be Published
2O3F
DownloadVisualize
BU of 2o3f by Molmil
Structural Genomics, the crystal structure of the N-terminal domain of the putative transcriptional regulator ybbH from Bacillus subtilis subsp. subtilis str. 168.
Descriptor: Putative HTH-type transcriptional regulator ybbH, SULFATE ION
Authors:Tan, K, Bigelow, L, Abdullah, J, Joachimiak, A, Midwest Center for Structural Genomics (MCSG)
Deposit date:2006-12-01
Release date:2007-01-02
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:The crystal structure of the N-terminal domain of the putative transcriptional regulator ybbH from Bacillus subtilis subsp. subtilis str. 168.
To be Published
2OQT
DownloadVisualize
BU of 2oqt by Molmil
Structural Genomics, the crystal structure of a putative PTS IIA domain from Streptococcus pyogenes M1 GAS
Descriptor: Hypothetical protein SPy0176
Authors:Tan, K, Wu, R, Osipiuk, J, Clancy, S, Joachimiak, A, Midwest Center for Structural Genomics (MCSG)
Deposit date:2007-02-01
Release date:2007-03-06
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.41 Å)
Cite:The crystal structure of a putative PTS IIA domain from Streptococcus pyogenes M1 GAS
To be Published
2OR0
DownloadVisualize
BU of 2or0 by Molmil
Structural Genomics, the crystal structure of a putative hydroxylase from Rhodococcus sp. RHA1
Descriptor: ACETATE ION, Hydroxylase
Authors:Tan, K, Skarina, T, Kagen, O, Savchenko, A, Edwards, A, Joachimiak, A, Midwest Center for Structural Genomics (MCSG)
Deposit date:2007-02-01
Release date:2007-03-06
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:The crystal structure of a putative hydroxylase from Rhodococcus sp. RHA1
To be Published
2P0T
DownloadVisualize
BU of 2p0t by Molmil
Structural Genomics, the crystal structure of a conserved putative protein from Pseudomonas syringae pv. tomato str. DC3000
Descriptor: DI(HYDROXYETHYL)ETHER, FORMIC ACID, UPF0307 protein PSPTO_4464
Authors:Tan, K, Bigelow, L, Clancy, S, Joachimiak, A, Midwest Center for Structural Genomics (MCSG)
Deposit date:2007-03-01
Release date:2007-04-03
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.19 Å)
Cite:The crystal structure of a conserved putative protein from Pseudomonas syringae pv. tomato str. DC3000
To be Published
2P0S
DownloadVisualize
BU of 2p0s by Molmil
Structural Genomics, the crystal structure of a putative ABC transporter domain from Porphyromonas gingivalis W83
Descriptor: ABC transporter, permease protein, putative, ...
Authors:Tan, K, Duggan, E, Abdullah, J, Joachimiak, A, Midwest Center for Structural Genomics (MCSG)
Deposit date:2007-03-01
Release date:2007-04-03
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:The crystal structure of a putative ABC transporter domain from Porphyromonas gingivalis W83
To be Published
3U9E
DownloadVisualize
BU of 3u9e by Molmil
The crystal structure of a possible phosphate acetyl/butaryl transferase (from Listeria monocytogenes EGD-e) in complex with CoA.
Descriptor: ARGININE, CHLORIDE ION, COENZYME A, ...
Authors:Tan, K, Zhou, M, Peterson, S, Anderson, W.F, Joachimiak, A, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2011-10-18
Release date:2011-11-16
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (2.04 Å)
Cite:The crystal structure of a possible phosphate acetyl/butaryl transferase (from Listeria monocytogenes EGD-e) in complex with CoA.
To be Published
3UFG
DownloadVisualize
BU of 3ufg by Molmil
The crystal structure of glycyl-tRNA synthetase subunit alpha from Campylobacter jejuni subsp. jejuni NCTC in complex with ATP
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Glycyl-tRNA synthetase alpha subunit, LEUCINE
Authors:Tan, K, Zhou, M, Peterson, S, Anderson, W.F, Joachimiak, A, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2011-11-01
Release date:2011-11-09
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (2.552 Å)
Cite:The crystal structure of glycyl-tRNA synthetase subunit alpha from Campylobacter jejuni subsp. jejuni NCTC in complex with ATP
To be Published
7XXF
DownloadVisualize
BU of 7xxf by Molmil
Structure of photosynthetic LH1-RC super-complex of Rhodopila globiformis
Descriptor: (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE, (6~{E},8~{E},10~{E},12~{E},14~{E},16~{E},18~{E},20~{E},22~{E},24~{E},26~{E},28~{E})-2,31-dimethoxy-2,6,10,14,19,23,27,31-octamethyl-dotriaconta-6,8,10,12,14,16,18,20,22,24,26,28-dodecaen-5-one, 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine, ...
Authors:Tani, K, Kanno, R, Kurosawa, K, Takaichi, S, Nagashima, K.V.P, Hall, M, Yu, L.-J, Kimura, Y, Madigan, M.T, Mizoguchi, A, Humbel, B.M, Wang-Otomo, Z.-Y.
Deposit date:2022-05-30
Release date:2022-11-16
Last modified:2022-11-23
Method:ELECTRON MICROSCOPY (2.24 Å)
Cite:An LH1-RC photocomplex from an extremophilic phototroph provides insight into origins of two photosynthesis proteins.
Commun Biol, 5, 2022
4XXI
DownloadVisualize
BU of 4xxi by Molmil
Crystal structure of the Bilin-binding domain of phycobilisome core-membrane linker ApcE
Descriptor: PHYCOCYANOBILIN, Phycobiliprotein ApcE
Authors:Tang, K, Ding, W.-L, Hoppner, A, Gartner, W, Zhao, K.-H.
Deposit date:2015-01-30
Release date:2015-12-16
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:The terminal phycobilisome emitter, LCM: A light-harvesting pigment with a phytochrome chromophore
Proc.Natl.Acad.Sci.USA, 112, 2015
4XXK
DownloadVisualize
BU of 4xxk by Molmil
Crystal structure of the Semet-derivative of the Bilin-binding domain of phycobilisome core-membrane linker ApcE
Descriptor: PHYCOCYANOBILIN, Phycobiliprotein ApcE
Authors:Tang, K, Ding, W.-L, Hoppner, A, Gartner, W, Zhao, K.-H.
Deposit date:2015-01-30
Release date:2015-12-16
Last modified:2016-01-13
Method:X-RAY DIFFRACTION (2.97 Å)
Cite:The terminal phycobilisome emitter, LCM: A light-harvesting pigment with a phytochrome chromophore.
Proc.Natl.Acad.Sci.USA, 112, 2015
6A8U
DownloadVisualize
BU of 6a8u by Molmil
PhoQ sensor domain (wild type): analysis of internal cavity
Descriptor: Sensor protein PhoQ
Authors:Yoshitani, K, Ishii, E, Taniguchi, K, Sugimoto, H, Shiro, Y, Mori, H, Akiyama, Y, Kato, A, Utsumi, R, Eguchi, Y.
Deposit date:2018-07-10
Release date:2019-01-30
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.848 Å)
Cite:Identification of an internal cavity in the PhoQ sensor domain for PhoQ activity and SafA-mediated control.
Biosci. Biotechnol. Biochem., 83, 2019
1IYY
DownloadVisualize
BU of 1iyy by Molmil
NMR STRUCTURE OF Gln25-RIBONUCLEASE T1, 24 STRUCTURES
Descriptor: RIBONUCLEASE T1
Authors:Hatano, K, Kojima, M, Suzuki, E, Tanokura, M, Takahashi, K.
Deposit date:2002-09-12
Release date:2003-10-07
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:Determination of the NMR structure of Gln25-ribonuclease T1.
Biol. Chem., 384, 2003
7VRJ
DownloadVisualize
BU of 7vrj by Molmil
STRUCTURE OF PHOTOSYNTHETIC LH1-RC SUPER-COMPLEX OF Allochromatium tepidum
Descriptor: (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE, BACTERIOCHLOROPHYLL A, BACTERIOPHEOPHYTIN A, ...
Authors:Tani, K, Kobayashi, K, Hosogi, N, Ji, X.-C, Nagashima, S, Nagashima, K.V.P, Tsukatani, Y, Kanno, R, Hall, M, Yu, L.-J, Ishikawa, I, Okura, Y, Madigan, M.T, Mizoguchi, A, Humbel, B.M, Kimura, Y, Wang-Otomo, Z.-Y.
Deposit date:2021-10-23
Release date:2022-05-04
Last modified:2022-06-08
Method:ELECTRON MICROSCOPY (2.81 Å)
Cite:A Ca 2+ -binding motif underlies the unusual properties of certain photosynthetic bacterial core light-harvesting complexes.
J.Biol.Chem., 298, 2022
6F9L
DownloadVisualize
BU of 6f9l by Molmil
Crystal structure of Barley Beta-Amylase complexed with 3-Deoxy-3-fluoro-maltose
Descriptor: Beta-amylase, CHLORIDE ION, alpha-D-glucopyranose-(1-4)-3-deoxy-3-fluoro-alpha-D-glucopyranose
Authors:Tantanarat, K, Stevenson, C.E.M, Rejzek, M, Lawson, D.M, Field, R.A.
Deposit date:2017-12-14
Release date:2019-01-30
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.77 Å)
Cite:Crystal structure of Barley Beta-Amylase complexed with 3-Deoxy-3-fluoro-maltose
To be published
1NFT
DownloadVisualize
BU of 1nft by Molmil
OVOTRANSFERRIN, N-TERMINAL LOBE, IRON LOADED OPEN FORM
Descriptor: FE (III) ION, NITRILOTRIACETIC ACID, PROTEIN (OVOTRANSFERRIN), ...
Authors:Mizutani, K, Yamashita, H, Kurokawa, H, Mikami, B, Hirose, M.
Deposit date:1999-01-07
Release date:1999-01-13
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Alternative structural state of transferrin. The crystallographic analysis of iron-loaded but domain-opened ovotransferrin N-lobe.
J.Biol.Chem., 274, 1999
7YML
DownloadVisualize
BU of 7yml by Molmil
Structure of photosynthetic LH1-RC super-complex of Rhodobacter capsulatus
Descriptor: (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE, 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine, BACTERIOCHLOROPHYLL A, ...
Authors:Tani, K, Kanno, R, Ji, X.-C, Satoh, I, Kobayashi, Y, Nagashima, K.V.P, Hall, M, Yu, L.-J, Kimura, Y, Mizoguchi, A, Humbel, B.M, Madigan, M.T, Wang-Otomo, Z.-Y.
Deposit date:2022-07-28
Release date:2023-02-22
Last modified:2023-03-01
Method:ELECTRON MICROSCOPY (2.6 Å)
Cite:Rhodobacter capsulatus forms a compact crescent-shaped LH1-RC photocomplex.
Nat Commun, 14, 2023
5AZD
DownloadVisualize
BU of 5azd by Molmil
Crystal structure of thermophilic rhodopsin.
Descriptor: Bacteriorhodopsin
Authors:Mizutani, K, Hashimoto, N, Tsukamoto, T, Yamashita, K, Yamamoto, M, Sudo, Y, Murata, T.
Deposit date:2015-09-30
Release date:2016-04-27
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:X-ray crystallographic structure of thermophilic rhodopsin: implications for high thermal stability and optogenetic availability.
To Be Published
1IT4
DownloadVisualize
BU of 1it4 by Molmil
Solution structure of the prokaryotic Phospholipase A2 from Streptomyces violaceoruber
Descriptor: CALCIUM ION, phospholipase A2
Authors:Ohtani, K, Sugiyama, M, Izuhara, M, Koike, T.
Deposit date:2002-01-08
Release date:2002-09-04
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:A novel prokaryotic phospholipase A2. Characterization, gene cloning, and solution structure.
J.BIOL.CHEM., 277, 2002
3VWI
DownloadVisualize
BU of 3vwi by Molmil
High resolution crystal structure of FraC in the monomeric form
Descriptor: AMMONIUM ION, CHLORIDE ION, Fragaceatoxin C, ...
Authors:Tanaka, K, Morante, K, Caaveiro, J.M.M, Gonzalez-Manas, J.M, Tsumoto, K.
Deposit date:2012-08-23
Release date:2013-08-28
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structural basis for self-assembly of a cytolytic pore lined by protein and lipid
Nat Commun, 6, 2015
2Z3P
DownloadVisualize
BU of 2z3p by Molmil
complex structure of LF-transferase and leucine
Descriptor: D(-)-TARTARIC ACID, LEUCINE, Leucyl/phenylalanyl-tRNA-protein transferase
Authors:Watanabe, K, Toh, Y, Tomita, K.
Deposit date:2007-06-04
Release date:2007-10-23
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Protein-based peptide-bond formation by aminoacyl-tRNA protein transferase
Nature, 449, 2007
2Z3O
DownloadVisualize
BU of 2z3o by Molmil
complex structure of LF-transferase and phenylalanine
Descriptor: D(-)-TARTARIC ACID, Leucyl/phenylalanyl-tRNA-protein transferase, PHENYLALANINE
Authors:Watanabe, K, Toh, Y, Tomita, K.
Deposit date:2007-06-04
Release date:2007-10-23
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Protein-based peptide-bond formation by aminoacyl-tRNA protein transferase
Nature, 449, 2007
1WE0
DownloadVisualize
BU of 1we0 by Molmil
Crystal structure of peroxiredoxin (AhpC) from Amphibacillus xylanus
Descriptor: AMMONIUM ION, alkyl hydroperoxide reductase C
Authors:Kitano, K, Kita, A, Hakoshima, T, Niimura, Y, Miki, K.
Deposit date:2004-05-21
Release date:2005-03-29
Last modified:2018-02-07
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Crystal structure of decameric peroxiredoxin (AhpC) from Amphibacillus xylanus
Proteins, 59, 2005
1R2J
DownloadVisualize
BU of 1r2j by Molmil
FkbI for Biosynthesis of Methoxymalonyl Extender Unit of Fk520 Polyketide Immunosuppresant
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, protein FkbI
Authors:Watanabe, K, Khosla, C, Stroud, R.M, Tsai, S.-C.
Deposit date:2003-09-28
Release date:2003-11-25
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal Structure of an Acyl-ACP Dehydrogenase from the FK520 Polyketide Biosynthetic Pathway: Insights into Extender Unit Biosynthesis
J.Mol.Biol., 334, 2003
2Z3K
DownloadVisualize
BU of 2z3k by Molmil
complex structure of LF-transferase and rAF
Descriptor: 2-(6-AMINO-OCTAHYDRO-PURIN-9-YL)-5-HYDROXYMETHYL-TETRAHYDRO-FURAN-3,4-DIOL, D(-)-TARTARIC ACID, Leucyl/phenylalanyl-tRNA-protein transferase, ...
Authors:Watanabe, K, Toh, Y, Tomita, K.
Deposit date:2007-06-04
Release date:2007-10-23
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.85 Å)
Cite:Protein-based peptide-bond formation by aminoacyl-tRNA protein transferase
Nature, 449, 2007

223166

PDB entries from 2024-07-31

PDB statisticsPDBj update infoContact PDBjnumon