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PDB: 1345 件

1KQ7
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E315Q Mutant Form of Fumarase C from E.coli
分子名称: CITRIC ACID, D-MALATE, FUMARATE HYDRATASE CLASS II
著者Weaver, T.M, Estevez, M, Skarda, J, Spencer, J.
登録日2002-01-04
公開日2002-08-23
最終更新日2023-08-16
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献X-ray crystallographic and kinetic correlation of a clinically observed human fumarase mutation.
Protein Sci., 11, 2002
1KQS
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The Haloarcula marismortui 50S Complexed with a Pretranslocational Intermediate in Protein Synthesis
分子名称: 23S RRNA, 5S RRNA, 6-AMINOHEXANOIC ACID, ...
著者Schmeing, T.M, Seila, A.C, Hansen, J.L, Freeborn, B, Soukup, J.K, Scaringe, S.A, Strobel, S.A, Moore, P.B, Steitz, T.A.
登録日2002-01-07
公開日2002-02-22
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (3.1 Å)
主引用文献A pre-translocational intermediate in protein synthesis observed in crystals of enzymatically active 50S subunits.
Nat.Struct.Biol., 9, 2002
4ZPI
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Crystal Structure of HygX from Streptomyces hygroscopicus with iron bound
分子名称: FE (II) ION, Putative oxidase/hydroxylase, SUCCINIC ACID
著者McCulloch, K.M, McCranie, E.K, Sarwar, M, Mathieu, J.L, Gitschlag, B.L, Du, Y, Bachmann, B.O, Iverson, T.M.
登録日2015-05-07
公開日2015-08-05
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (2.504 Å)
主引用文献Oxidative cyclizations in orthosomycin biosynthesis expand the known chemistry of an oxygenase superfamily.
Proc.Natl.Acad.Sci.USA, 112, 2015
5EQ4
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Crystal structure of the SrpA adhesin R347E mutant from Streptococcus sanguinis
分子名称: ACETATE ION, CALCIUM ION, Platelet-binding glycoprotein
著者Loukachevitch, L.V, McCulloch, K.M, Vann, K.R, Wawrzak, Z, Anderson, S, Iverson, T.M.
登録日2015-11-12
公開日2016-01-27
最終更新日2024-03-06
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Structural Basis for Sialoglycan Binding by the Streptococcus sanguinis SrpA Adhesin.
J.Biol.Chem., 291, 2016
5FNA
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Cryo-EM reconstruction of caspase-1 CARD
分子名称: Caspase-1
著者Li, Y, Lu, A, Schmidt, F.I, Yin, Q, Chen, S, Fu, T.M, Tong, A.B, Ploegh, H.L, Mao, Y, Wu, H.
登録日2015-11-11
公開日2016-03-30
最終更新日2024-05-08
実験手法ELECTRON MICROSCOPY (4.8 Å)
主引用文献Molecular Basis of Caspase-1 Polymerization and its Inhibition by a Novel Capping Mechanism
Nat.Struct.Mol.Biol., 23, 2016
1K5E
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Solution Structure of R-styrene Adduct in the Ras61 Sequence
分子名称: 5'-D(*CP*GP*GP*AP*CP*(ABR)P*AP*GP*AP*AP*G)-3', 5'-D(*CP*TP*TP*CP*TP*TP*GP*TP*CP*CP*G)-3'
著者Hennard, C, Finneman, J, Harris, C.M, Harris, T.M, Stone, M.P.
登録日2001-10-10
公開日2002-01-23
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献The nonmutagenic (R)- and (S)-beta-(N(6)-adenyl)styrene oxide adducts are oriented in the major groove and show little perturbation to DNA structure.
Biochemistry, 40, 2001
5BZU
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Crystal structure of the RNA-binding domain of yeast Puf5p bound to AAT2 RNA
分子名称: Suppressor protein MPT5, UGUAAUA
著者Qiu, C, Hall, T.M.T.
登録日2015-06-11
公開日2015-09-23
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (2.501 Å)
主引用文献RNA regulatory networks diversified through curvature of the PUF protein scaffold.
Nat Commun, 6, 2015
5CIC
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Complex of yeast cytochrome c peroxidase (W191G) bound to 3-aminobenzotrifluoride with iso-1 cytochrome c
分子名称: 3-(trifluoromethyl)aniline, Cytochrome c iso-1, Cytochrome c peroxidase, ...
著者Crane, B.R, Payne, T.M.
登録日2015-07-11
公開日2016-08-03
最終更新日2021-03-10
実験手法X-RAY DIFFRACTION (2.103 Å)
主引用文献Constraints on the Radical Cation Center of Cytochrome c Peroxidase for Electron Transfer from Cytochrome c.
Biochemistry, 55, 2016
5CIH
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Complex of yeast cytochrome c peroxidase (W191Y) with iso-1 cytochrome c
分子名称: Cytochrome c iso-1, Cytochrome c peroxidase, mitochondrial, ...
著者Crane, B.R, Payne, T.M.
登録日2015-07-12
公開日2016-08-03
最終更新日2021-03-10
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Constraints on the Radical Cation Center of Cytochrome c Peroxidase for Electron Transfer from Cytochrome c.
Biochemistry, 55, 2016
1I3L
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BU of 1i3l by Molmil
MOLECULAR BASIS FOR SEVERE EPIMERASE-DEFICIENCY GALACTOSEMIA: X-RAY STRUCTURE OF THE HUMAN V94M-SUBSTITUTED UDP-GALACTOSE 4-EPIMERASE
分子名称: 1,2-ETHANEDIOL, CHLORIDE ION, GALACTOSE-URIDINE-5'-DIPHOSPHATE, ...
著者Thoden, J.B, Wohlers, T.M, Fridovich-Keil, J.L, Holden, H.M.
登録日2001-02-15
公開日2001-06-20
最終更新日2023-08-09
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Molecular basis for severe epimerase deficiency galactosemia. X-ray structure of the human V94m-substituted UDP-galactose 4-epimerase.
J.Biol.Chem., 276, 2001
1I3M
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MOLECULAR BASIS FOR SEVERE EPIMERASE-DEFICIENCY GALACTOSEMIA: X-RAY STRUCTURE OF THE HUMAN V94M-SUBSTITUTED UDP-GALACTOSE 4-EPIMERASE
分子名称: CHLORIDE ION, MAGNESIUM ION, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, ...
著者Thoden, J.B, Wohlers, T.M, Fridovich-Keil, J.L, Holden, H.M.
登録日2001-02-15
公開日2001-06-20
最終更新日2023-08-09
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Molecular basis for severe epimerase deficiency galactosemia. X-ray structure of the human V94m-substituted UDP-galactose 4-epimerase.
J.Biol.Chem., 276, 2001
1I7V
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BU of 1i7v by Molmil
THE SOLUTION STRUCTURE OF A BAY REGION 1R-BENZ[A]ANTHRACENE OXIDE ADDUCT AT THE N6 POSITION OF ADENINE OF AN OLIGODEOXYNUCLEOTIDE CONTAINING THE HUMAN N-RAS CODON 61 SEQUENCE
分子名称: 1R,2S,3R,4S-TETRAHYDRO-BENZO[A]ANTHRACENE-2,3,4-TRIOL, 5'-D(*CP*GP*GP*AP*CP*AP*(BZA)AP*GP*AP*AP*G)-3', 5'-D(*CP*TP*TP*CP*TP*TP*GP*TP*CP*CP*G)-3'
著者Li, Z, Tamura, P.J, Wilkinson, A.S, Harris, C.M, Harris, T.M, Stone, M.P.
登録日2001-03-10
公開日2001-03-28
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献Intercalation of the (1R,2S,3R,4S)-N6-[1-(1,2,3,4-tetrahydro-2,3,4-trihydroxybenz[a]anthracenyl)]-2'-deoxyadenosyl adduct in the N-ras codon 61 sequence: DNA sequence effects
Biochemistry, 40, 2001
1K0X
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Solution Structure of Melanoma Inhibitory Activity Protein
分子名称: Melanoma Derived Growth Regulatory Protein
著者Lougheed, J.C, Domaille, P.J, Handel, T.M.
登録日2001-09-21
公開日2002-07-24
最終更新日2022-02-23
実験手法SOLUTION NMR
主引用文献Solution structure and dynamics of melanoma inhibitory activity protein.
J.Biomol.NMR, 22, 2002
5E29
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Crystal Structure of Deoxygenated Hemoglobin in Complex with an Allosteric Effector and Nitric Oxide
分子名称: 2-(nitrooxy)ethyl 2-(4-{2-[(3,5-dimethylphenyl)amino]-2-oxoethyl}phenoxy)-2-methylpropanoate, 2-{4-[(3,5-DIMETHYLANILINO)-CARBONYL-METHYL]-PHENOXY}-2-METHYLPROPIONIC ACID, CACODYLATE ION, ...
著者Safo, M.K, Deshpande, T.M.
登録日2015-09-30
公開日2015-10-14
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Design, Synthesis, and Investigation of Novel Nitric Oxide (NO)-Releasing Prodrugs as Drug Candidates for the Treatment of Ischemic Disorders: Insights into NO-Releasing Prodrug Biotransformation and Hemoglobin-NO Biochemistry.
Biochemistry, 54, 2015
5BZ1
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BU of 5bz1 by Molmil
Crystal structure of the RNA-binding domain of yeast Puf5p bound to MFA2 RNA
分子名称: RNA (5'-R(*UP*GP*UP*AP*UP*UP*UP*GP*UP*A)-3'), Suppressor protein MPT5
著者Qiu, C, Hall, T.M.T.
登録日2015-06-11
公開日2015-09-23
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (2.15 Å)
主引用文献RNA regulatory networks diversified through curvature of the PUF protein scaffold.
Nat Commun, 6, 2015
5EQ2
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Crystal Structure of the SrpA Adhesin from Streptococcus sanguinis
分子名称: ACETATE ION, CALCIUM ION, Platelet-binding glycoprotein
著者Loukachevitch, L.V, McCulloch, K.M, Vann, K.R, Wawrzak, Z, Anderson, S, Iverson, T.M.
登録日2015-11-12
公開日2016-01-27
最終更新日2024-03-06
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Structural Basis for Sialoglycan Binding by the Streptococcus sanguinis SrpA Adhesin.
J.Biol.Chem., 291, 2016
5AQ6
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Structure of E. coli ZinT at 1.79 Angstrom
分子名称: ACETIC ACID, METAL-BINDING PROTEIN ZINT, ZINC ION
著者Santo, P.E, Colaco, H.G, Matias, P, Vicente, J.B, Bandeiras, T.M.
登録日2015-09-21
公開日2016-01-27
最終更新日2019-10-23
実験手法X-RAY DIFFRACTION (1.79 Å)
主引用文献Roles of Escherichia Coli Zint in Cobalt, Mercury and Cadmium Resistance and Structural Insights Into the Metal Binding Mechanism
Metallomics, 8, 2016
2ZBJ
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Crystal structure of Dioclea rostrata lectin
分子名称: CALCIUM ION, Lectin alpha chain, MANGANESE (II) ION, ...
著者de Oliveira, T.M, Delatorre, P, da Rocha, B.A.M, de Sousa, E.P, Nascimento, K.S, Bezerra, G.A, Moura, T.R, Benevides, R.G, Bezerra, E.H.S, Moreno, F.B.M.B, Freire, V.N, de Azevedo Jr, W.F, Cavada, B.S.
登録日2007-10-22
公開日2008-08-19
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.05 Å)
主引用文献Crystal structure of Dioclea rostrata lectin: Insights into understanding the pH-dependent dimer-tetramer equilibrium and the structural basis for carbohydrate recognition in Diocleinae lectins
J.Struct.Biol., 164, 2008
7O4O
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Structure of Staphylococcus aureus m1A22-tRNA methyltransferase in complex with S-adenosylhomocysteine
分子名称: GLYCEROL, S-ADENOSYL-L-HOMOCYSTEINE, tRNA (Adenine(22)-N(1))-methyltransferase
著者Gloster, T.M, Czekster, C.M, da Silva, R.G.
登録日2021-04-06
公開日2022-04-06
最終更新日2024-05-01
実験手法X-RAY DIFFRACTION (1.52 Å)
主引用文献Structure, dynamics, and molecular inhibition of the Staphylococcus aureus m 1 A22-tRNA methyltransferase TrmK.
J.Biol.Chem., 298, 2022
3BV7
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Crystal structure of Delta(4)-3-ketosteroid 5-beta-reductase in complex with NADP and glycerol. Resolution: 1.79 A.
分子名称: 3-oxo-5-beta-steroid 4-dehydrogenase, GLYCEROL, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
著者Di Costanzo, L, Drury, J, Penning, T.M, Christianson, D.W.
登録日2008-01-04
公開日2008-04-01
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (1.79 Å)
主引用文献Crystal Structure of Human Liver {Delta}4-3-Ketosteroid 5{beta}-Reductase (AKR1D1) and Implications for Substrate Binding and Catalysis.
J.Biol.Chem., 283, 2008
5DZ2
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Geosmin synthase from Streptomyces coelicolor N-terminal domain complexed with three Mg2+ ions and alendronic acid
分子名称: ALENDRONATE, Germacradienol/geosmin synthase, MAGNESIUM ION
著者Harris, G.G, Lombardi, P.M, Pemberton, T.A, Matsui, T, Weiss, T.M, Cole, K.E, Koksal, M, Murphy, F.V, Vedula, L.S, Chou, W.K.W, Cane, D.E, Christianson, D.W.
登録日2015-09-25
公開日2015-12-09
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (2.111 Å)
主引用文献Structural Studies of Geosmin Synthase, a Bifunctional Sesquiterpene Synthase with alpha alpha Domain Architecture That Catalyzes a Unique Cyclization-Fragmentation Reaction Sequence.
Biochemistry, 54, 2015
5E6G
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Crystal Structure of De Novo Designed Protein CA01
分子名称: De novo designed protein CA01, GLYCEROL, PHOSPHATE ION
著者Jacobs, T.M, Williams, T, Kuhlman, B.
登録日2015-10-09
公開日2016-05-18
最終更新日2024-03-06
実験手法X-RAY DIFFRACTION (2.09 Å)
主引用文献Design of structurally distinct proteins using strategies inspired by evolution.
Science, 352, 2016
7O4N
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Structure of Staphylococcus aureus m1A22-tRNA methyltransferase in complex with S-adenosylmethionine
分子名称: GLYCEROL, S-ADENOSYLMETHIONINE, tRNA (Adenine(22)-N(1))-methyltransferase
著者Gloster, T.M, Czekster, C.M, da Silva, R.G.
登録日2021-04-06
公開日2022-04-20
最終更新日2024-05-01
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献Structure, dynamics, and molecular inhibition of the Staphylococcus aureus m 1 A22-tRNA methyltransferase TrmK.
J.Biol.Chem., 298, 2022
7O4M
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Structure of Staphylococcus aureus m1A22-tRNA methyltransferase
分子名称: CITRIC ACID, GLYCEROL, tRNA (Adenine(22)-N(1))-methyltransferase
著者Gloster, T.M, Czekster, C.M, da Silva, R.G.
登録日2021-04-06
公開日2022-04-27
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (1.3 Å)
主引用文献Structure, dynamics, and molecular inhibition of the Staphylococcus aureus m 1 A22-tRNA methyltransferase TrmK.
J.Biol.Chem., 298, 2022
3C7O
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Crystal structure of a glycoside hydrolase family 43 arabinoxylan arabinofuranohydrolase from Bacillus subtilis in complex with cellotetraose.
分子名称: CALCIUM ION, Endo-1,4-beta-xylanase, FORMIC ACID, ...
著者Vandermarliere, E, Bourgois, T.M, Winn, M.D, Van Campenhout, S, Volckaert, G, Strelkov, S.V, Delcour, J.A, Rabijns, A, Courtin, C.M.
登録日2008-02-08
公開日2008-11-18
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Structural analysis of a glycoside hydrolase family 43 arabinoxylan arabinofuranohydrolase in complex with xylotetraose reveals a different binding mechanism compared with other members of the same family.
Biochem.J., 418, 2009

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