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PDB: 1831 results

2BCU
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DNA polymerase lambda in complex with a DNA duplex containing an unpaired Damp and a T:T mismatch
Descriptor: 5'-D(*CP*AP*GP*TP*TP*CP*G)-3', 5'-D(*CP*GP*GP*CP*CP*GP*AP*TP*AP*CP*TP*G)-3', 5'-D(P*GP*CP*CP*G)-3', ...
Authors:Garcia-Diaz, M, Bebenek, K, Krahn, J.M, Pedersen, L.C, Kunkel, T.A.
Deposit date:2005-10-19
Release date:2006-03-07
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural analysis of strand misalignment during DNA synthesis by a human DNA polymerase
Cell(Cambridge,Mass.), 124, 2006
2BCS
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DNA polymerase lambda in complex with a DNA duplex containing an unpaired Dcmp
Descriptor: 5'-D(*CP*AP*GP*TP*AP*CP*G)-3', 5'-D(*CP*GP*GP*CP*CP*GP*CP*TP*AP*CP*TP*G)-3', 5'-D(*GP*CP*CP*G)-3', ...
Authors:Garcia-Diaz, M, Bebenek, K, Krahn, J.M, Pedersen, L.C, Kunkel, T.A.
Deposit date:2005-10-19
Release date:2006-03-07
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural analysis of strand misalignment during DNA synthesis by a human DNA polymerase
Cell(Cambridge,Mass.), 124, 2006
4M4W
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Mechanistic implications for the bacterial primosome assembly of the structure of a helicase-helicase loader complex
Descriptor: DNA primase, Primosomal protein DnaI, Replicative helicase
Authors:Liu, B, Eliason, W.K, Steitz, T.A.
Deposit date:2013-08-07
Release date:2013-09-25
Last modified:2013-10-02
Method:X-RAY DIFFRACTION (6.1 Å)
Cite:Structure of a helicase-helicase loader complex reveals insights into the mechanism of bacterial primosome assembly.
Nat Commun, 4, 2013
2AS9
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Functional and structural characterization of Spl proteases from staphylococcus aureus
Descriptor: ZINC ION, serine protease
Authors:Popowicz, G.M, Dubin, G, Stec-Niemczyk, J, Czarny, A, Dubin, A, Potempa, J, Holak, T.A.
Deposit date:2005-08-23
Release date:2005-09-06
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Functional and Structural Characterization of Spl Proteases from Staphylococcus aureus
J.Mol.Biol., 358, 2006
1B77
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BUILDING A REPLISOME STRUCTURE FROM INTERACTING PIECES: A SLIDING CLAMP COMPLEXED WITH AN INTERACTION PEPTIDE FROM DNA POLYMERASE
Descriptor: PROTEIN (SLIDING CLAMP)
Authors:Shamoo, Y, Steitz, T.A.
Deposit date:1999-01-27
Release date:1999-02-08
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Building a replisome from interacting pieces: sliding clamp complexed to a peptide from DNA polymerase and a polymerase editing complex.
Cell(Cambridge,Mass.), 99, 1999
1BDN
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BU of 1bdn by Molmil
CRYSTAL LATTICE PACKING IS IMPORTANT IN DETERMINING THE BEND OF A DNA DODECAMER CONTAINING AN ADENINE TRACT
Descriptor: DNA (5'-D(*CP*GP*CP*AP*AP*AP*AP*AP*TP*GP*CP*G)-3'), DNA (5'-D(*CP*GP*CP*AP*TP*TP*TP*TP*TP*GP*CP*G)-3'), MAGNESIUM ION
Authors:DiGabriele, A.D, Sanderson, M.R, Steitz, T.A.
Deposit date:1989-07-25
Release date:1991-04-15
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Crystal lattice packing is important in determining the bend of a DNA dodecamer containing an adenine tract.
Proc.Natl.Acad.Sci.USA, 86, 1989
4LZD
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BU of 4lzd by Molmil
Human DNA polymerase mu- Apoenzyme
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, DNA-directed DNA/RNA polymerase mu, ...
Authors:Moon, A.F, Pryor, J.M, Ramsden, D.A, Kunkel, T.A, Bebenek, K, Pedersen, L.C.
Deposit date:2013-07-31
Release date:2014-02-05
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.849 Å)
Cite:Sustained active site rigidity during synthesis by human DNA polymerase mu.
Nat.Struct.Mol.Biol., 21, 2014
1BRD
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BU of 1brd by Molmil
Model for the structure of Bacteriorhodopsin based on high-resolution Electron Cryo-microscopy
Descriptor: BACTERIORHODOPSIN PRECURSOR, RETINAL
Authors:Henderson, R, Baldwin, J.M, Ceska, T.A, Zemlin, F, Beckmann, E, Downing, K.H.
Deposit date:1990-05-23
Release date:1991-04-15
Last modified:2024-10-30
Method:ELECTRON CRYSTALLOGRAPHY (3.5 Å)
Cite:Model for the structure of bacteriorhodopsin based on high-resolution electron cryo-microscopy.
J.Mol.Biol., 213, 1990
1CEJ
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BU of 1cej by Molmil
SOLUTION STRUCTURE OF AN EGF MODULE PAIR FROM THE PLASMODIUM FALCIPARUM MEROZOITE SURFACE PROTEIN 1
Descriptor: PROTEIN (MEROZOITE SURFACE PROTEIN 1)
Authors:Morgan, W.D, Birdsall, B, Frenkiel, T.A, Gradwell, M.G, Burghaus, P.A, Syed, S.E.H, Uthaipibull, C, Holder, A.A, Feeney, J.
Deposit date:1999-03-08
Release date:1999-05-28
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:Solution structure of an EGF module pair from the Plasmodium falciparum merozoite surface protein 1.
J.Mol.Biol., 289, 1999
2FBL
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The crystal structure of the hypothetical protein NE1496
Descriptor: SODIUM ION, hypothetical protein NE1496
Authors:Lunin, V.V, Skarina, T, Onopriyenko, O, Binkowski, T.A, Joachimiak, A, Edwards, A.M, Savchenko, A, Midwest Center for Structural Genomics (MCSG)
Deposit date:2005-12-09
Release date:2005-12-20
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:The crystal structure of the hypothetical protein NE1496
To be Published
4LZG
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Binary complex of human DNA Polymerase Mu with DNA
Descriptor: CHLORIDE ION, DNA-directed DNA/RNA polymerase mu, GLYCEROL, ...
Authors:Moon, A.F, Pryor, J.M, Ramsden, D.A, Kunkel, T.A, Bebenek, K, Pedersen, L.C.
Deposit date:2013-07-31
Release date:2014-02-05
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.599 Å)
Cite:Sustained active site rigidity during synthesis by human DNA polymerase mu.
Nat.Struct.Mol.Biol., 21, 2014
1CLQ
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BU of 1clq by Molmil
CRYSTAL STRUCTURE OF A REPLICATION FORK DNA POLYMERASE EDITING COMPLEX AT 2.7 A RESOLUTION
Descriptor: CALCIUM ION, DNA (5'-D(*AP*GP*TP*AP*GP*TP*TP*CP*CP*GP*CP*G)-3'), DNA (5'-D(*GP*CP*GP*GP*AP*AP*CP*TP*AP*CP*T)-3'), ...
Authors:Shamoo, Y, Steitz, T.A.
Deposit date:1999-04-30
Release date:1999-10-28
Last modified:2023-08-02
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Building a replisome from interacting pieces: sliding clamp complexed to a peptide from DNA polymerase and a polymerase editing complex.
Cell(Cambridge,Mass.), 99, 1999
1QSL
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BU of 1qsl by Molmil
KLENOW FRAGMENT COMPLEXED WITH SINGLE-STRANDED SUBSTRATE AND EUROPIUM (III) ION
Descriptor: 5'-D(*GP*CP*TP*TP*AP*CP*GP*C)-3', DNA POLYMERASE I, EUROPIUM ION
Authors:Brautigam, C.A, Aschheim, K, Steitz, T.A.
Deposit date:1999-06-22
Release date:1999-06-30
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural elucidation of the binding and inhibitory properties of lanthanide (III) ions at the 3'-5' exonucleolytic active site of the Klenow fragment
Chem.Biol., 6, 1999
1MRP
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BU of 1mrp by Molmil
FERRIC-BINDING PROTEIN FROM HAEMOPHILUS INFLUENZAE
Descriptor: FE (III) ION, FERRIC IRON BINDING PROTEIN, PHOSPHATE ION
Authors:Bruns, C.M, Nowalk, A.J, Arvai, A.S, Mctigue, M.A, Vaughan, K.G, Mietzner, T.A, Mcree, D.E.
Deposit date:1997-05-14
Release date:1998-01-28
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structure of Haemophilus influenzae Fe(+3)-binding protein reveals convergent evolution within a superfamily.
Nat.Struct.Biol., 4, 1997
4M0A
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BU of 4m0a by Molmil
Human DNA Polymerase Mu post-catalytic complex
Descriptor: 1,2-ETHANEDIOL, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, DNA-directed DNA/RNA polymerase mu, ...
Authors:Moon, A.F, Pryor, J.M, Ramsden, D.A, Kunkel, T.A, Bebenek, K, Pedersen, L.C.
Deposit date:2013-08-01
Release date:2014-02-05
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Sustained active site rigidity during synthesis by human DNA polymerase mu.
Nat.Struct.Mol.Biol., 21, 2014
4MDQ
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BU of 4mdq by Molmil
Structure of a novel submicromolar MDM2 inhibitor
Descriptor: 3-[(1R)-2-(benzylamino)-1-{[(2S)-1-(hydroxyamino)-4-methyl-1-oxopentan-2-yl]amino}-2-oxoethyl]-6-chloro-N-hydroxy-1H-indole-2-carboxamide, E3 ubiquitin-protein ligase Mdm2
Authors:Bista, M, Popowicz, G, Holak, T.A.
Deposit date:2013-08-23
Release date:2013-11-13
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.119 Å)
Cite:Transient Protein States in Designing Inhibitors of the MDM2-p53 Interaction.
Structure, 21, 2013
2DSM
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BU of 2dsm by Molmil
NMR Structure of Bacillus Subtilis Protein YqaI, Northeast Structural Genomics Target SR450
Descriptor: Hypothetical protein yqaI
Authors:Ramelot, T.A, Cort, J.R, Wang, D, Janua, H, Cunningham, K, Ma, L.C, Xiao, R, Liu, J, Baran, M, Swapna, G.V.T, Acton, T.B, Rost, B, Montelione, G.T, Kennedy, M.A, Northeast Structural Genomics Consortium (NESG)
Deposit date:2006-07-01
Release date:2006-08-26
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:NMR Structure of Bacillus Subtilis Protein YqaI, Northeast Structural Genomics Target SR450
to be published
2F1E
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BU of 2f1e by Molmil
Solution structure of ApaG protein
Descriptor: Protein apaG
Authors:Contessa, G, Pertinhez, T.A, Spisni, A, Paci, M, Farah, C.S, Cicero, D.O.
Deposit date:2005-11-14
Release date:2006-10-24
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Solution structure of ApaG from Xanthomonas axonopodis pv. citri reveals a fibronectin-3 fold.
Proteins, 67, 2007
4V9R
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BU of 4v9r by Molmil
Crystal structure of antibiotic DITYROMYCIN bound to 70S ribosome
Descriptor: 16S Ribosomal RNA, 23S Ribosomal RNA, 30S Ribosomal Protein S10, ...
Authors:Bulkley, D.P, Brandi, L, Polikanov, Y.S, Fabbretti, A, O'Connor, M, Gualerzi, C.O, Steitz, T.A.
Deposit date:2013-12-05
Release date:2014-07-09
Last modified:2014-12-10
Method:X-RAY DIFFRACTION (3 Å)
Cite:The antibiotics dityromycin and GE82832 bind protein S12 and block EF-G-catalyzed translocation.
Cell Rep, 6, 2014
1GUB
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BU of 1gub by Molmil
Hinge-bending motion of D-allose binding protein from Escherichia coli: three open conformations
Descriptor: D-ALLOSE-BINDING PERIPLASMIC PROTEIN, NICKEL (II) ION
Authors:Magnusson, U, Chaudhuri, B.N, Ko, J, Park, C, Jones, T.A, Mowbray, S.L.
Deposit date:2002-01-24
Release date:2003-03-06
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Structure of D-Allose Binding Protein from Escherichia Coli Bound to D-Allose at 1.8 A Resolution
J.Mol.Biol., 286, 1999
1QVG
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Structure of CCA oligonucleotide bound to the tRNA binding sites of the large ribosomal subunit of Haloarcula marismortui
Descriptor: 23S ribosomal rna, 50S RIBOSOMAL PROTEIN L10E, 50S ribosomal protein L13P, ...
Authors:Schmeing, T.M, Moore, P.B, Steitz, T.A.
Deposit date:2003-08-27
Release date:2003-11-11
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Structures of deacylated tRNA mimics bound to the E site of the large ribosomal subunit
RNA, 9, 2003
1GUD
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BU of 1gud by Molmil
Hinge-bending motion of D-allose binding protein from Escherichia coli: three open conformations
Descriptor: D-ALLOSE-BINDING PERIPLASMIC PROTEIN, ZINC ION
Authors:Magnusson, U, Chaudhuri, B.N, Ko, J, Park, C, Jones, T.A, Mowbray, S.L.
Deposit date:2002-01-24
Release date:2003-03-06
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.71 Å)
Cite:Structure of D-Allose Binding Protein from Escherichia Coli Bound to D-Allose at 1.8 A Resolution
J.Mol.Biol., 286, 1999
1Q86
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Crystal structure of CCA-Phe-cap-biotin bound simultaneously at half occupancy to both the A-site and P-site of the the 50S ribosomal Subunit.
Descriptor: 23S ribosomal rna, 50S ribosomal protein L13P, 50S ribosomal protein L14P, ...
Authors:Hansen, J.L, Schmeing, T.M, Moore, P.B, Steitz, T.A.
Deposit date:2003-08-20
Release date:2003-10-07
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structural insights into peptide bond formation.
Proc.Natl.Acad.Sci.USA, 99, 2002
1QJW
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BU of 1qjw by Molmil
CEL6A (Y169F) WITH A NON-HYDROLYSABLE CELLOTETRAOSE
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, CADMIUM ION, CELLOBIOHYDROLASE CEL6A (FORMERLY CALLED CBH II), ...
Authors:Zou, J.-Y, Jones, T.A.
Deposit date:1999-07-06
Release date:1999-09-18
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystallographic Evidence for Substrate Ring Distortion and Protein Conformational Changes During Catalysis in Cellobiohydrolase Cel6A from Trichoderma Reesei
Structure, 7, 1999
1Q7Y
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Crystal Structure of CCdAP-Puromycin bound at the Peptidyl transferase center of the 50S ribosomal subunit
Descriptor: 23S ribosomal rna, 50S ribosomal protein L13P, 50S ribosomal protein L14P, ...
Authors:Hansen, J.L, Schmeing, T.M, Moore, P.B, Steitz, T.A.
Deposit date:2003-08-20
Release date:2003-10-07
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Structural Insights Into Peptide Bond Formation
Proc.Natl.Acad.Sci.USA, 99, 2002

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