5ZYK
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![BU of 5zyk by Molmil](/molmil-images/mine/5zyk) | Crystal structure of CERT START domain in complex with compound E25 | Descriptor: | 2-[4-[4-cyclopentyl-3-[(1~{S},2~{R})-2-pyridin-2-ylcyclopropyl]phenyl]phenyl]sulfonylethanol, LIPID-TRANSFER PROTEIN CERT | Authors: | Suzuki, M, Nakao, N, Ueno, M, Sakai, S, Egawa, D, Hanzawa, H, Kawasaki, S, Kumagai, K, Kobayashi, S, Hanada, K. | Deposit date: | 2018-05-25 | Release date: | 2019-02-27 | Last modified: | 2024-03-27 | Method: | X-RAY DIFFRACTION (1.55 Å) | Cite: | Natural ligand-nonmimetic inhibitors of the lipid-transfer protein CERT Commun Chem, 2019
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5ZYG
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![BU of 5zyg by Molmil](/molmil-images/mine/5zyg) | Crystal structure of CERT START domain in complex with compound B5 | Descriptor: | 2-[4-[3-~{tert}-butyl-5-(2-pyridin-2-ylethyl)phenyl]phenyl]sulfonylethanol, LIPID-TRANSFER PROTEIN CERT | Authors: | Suzuki, M, Nakao, N, Ueno, M, Sakai, S, Egawa, D, Hanzawa, H, Kawasaki, S, Kumagai, K, Kobayashi, S, Hanada, K. | Deposit date: | 2018-05-25 | Release date: | 2019-02-27 | Last modified: | 2024-03-27 | Method: | X-RAY DIFFRACTION (1.8 Å) | Cite: | Natural ligand-nonmimetic inhibitors of the lipid-transfer protein CERT Commun Chem, 2019
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5ZYM
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![BU of 5zym by Molmil](/molmil-images/mine/5zym) | Crystal structure of CERT START domain in complex with compound E25B | Descriptor: | 2-[4-[4-cyclopentyl-3-[(1~{R},2~{S})-2-pyridin-2-ylcyclopropyl]phenyl]phenyl]sulfonylethanol, GLYCEROL, LIPID-TRANSFER PROTEIN CERT | Authors: | Suzuki, M, Nakao, N, Ueno, M, Sakai, S, Egawa, D, Hanzawa, H, Kawasaki, S, Kumagai, K, Kobayashi, S, Hanada, K. | Deposit date: | 2018-05-25 | Release date: | 2019-02-27 | Last modified: | 2024-03-27 | Method: | X-RAY DIFFRACTION (1.9 Å) | Cite: | Natural ligand-nonmimetic inhibitors of the lipid-transfer protein CERT Commun Chem, 2019
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6KKA
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![BU of 6kka by Molmil](/molmil-images/mine/6kka) | Xylanase J mutant from Bacillus sp. 41M-1 | Descriptor: | (4S)-2-METHYL-2,4-PENTANEDIOL, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, CALCIUM ION, ... | Authors: | Suzuki, M, Takita, T, Nakatani, K. | Deposit date: | 2019-07-24 | Release date: | 2019-09-04 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (2.36 Å) | Cite: | Increase in the thermostability of GH11 xylanase XynJ from Bacillus sp. strain 41M-1 using site saturation mutagenesis. Enzyme.Microb.Technol., 130, 2019
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2EI6
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![BU of 2ei6 by Molmil](/molmil-images/mine/2ei6) | FACTOR XA IN COMPLEX WITH THE INHIBITOR (-)-cis-N1-[(5-Chloroindol-2-yl)carbonyl]-N2-[(5-methyl-4,5,6,7-tetrahydrothiazolo[5,4-c]pyridin-2-yl)carbonyl]-1,2-cyclohexanediamine | Descriptor: | CALCIUM ION, Coagulation factor X, heavy chain, ... | Authors: | Suzuki, M. | Deposit date: | 2007-03-12 | Release date: | 2008-03-18 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (2.3 Å) | Cite: | Cycloalkanediamine derivatives as novel blood coagulation factor Xa inhibitors. Bioorg.Med.Chem.Lett., 17, 2007
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2EI7
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5WR9
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![BU of 5wr9 by Molmil](/molmil-images/mine/5wr9) | Crystal structure of hen egg-white lysozyme | Descriptor: | CHLORIDE ION, Lysozyme C, SODIUM ION | Authors: | Sugahara, M, Suzuki, M, Masuda, T, Inoue, S, Nango, E. | Deposit date: | 2016-12-01 | Release date: | 2017-12-06 | Last modified: | 2023-09-06 | Method: | X-RAY DIFFRACTION (1.8 Å) | Cite: | Hydroxyethyl cellulose matrix applied to serial crystallography Sci Rep, 7, 2017
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5WR8
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![BU of 5wr8 by Molmil](/molmil-images/mine/5wr8) | Thaumatin structure determined by SACLA at 1.55 Angstrom | Descriptor: | L(+)-TARTARIC ACID, Thaumatin I | Authors: | Masuda, T, Suzuki, M, Inoue, S, Sugahara, M. | Deposit date: | 2016-12-01 | Release date: | 2017-11-29 | Last modified: | 2023-09-06 | Method: | X-RAY DIFFRACTION (1.55 Å) | Cite: | Hydroxyethyl cellulose matrix applied to serial crystallography Sci Rep, 7, 2017
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1MP9
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![BU of 1mp9 by Molmil](/molmil-images/mine/1mp9) | TBP from a mesothermophilic archaeon, Sulfolobus acidocaldarius | Descriptor: | TATA-binding protein | Authors: | Koike, H, Kawashima-Ohya, Y, Yamasaki, T, Clowney, L, Katsuya, Y, Suzuki, M. | Deposit date: | 2002-09-12 | Release date: | 2003-11-04 | Last modified: | 2024-03-13 | Method: | X-RAY DIFFRACTION (2 Å) | Cite: | Origins of Protein Stability Revealed by Comparing Crystal Structures of TATA Binding Proteins. Structure, 12, 2004
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2GCC
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![BU of 2gcc by Molmil](/molmil-images/mine/2gcc) | SOLUTION STRUCTURE OF THE GCC-BOX BINDING DOMAIN, NMR, MINIMIZED MEAN STRUCTURE | Descriptor: | ATERF1 | Authors: | Allen, M.D, Yamasaki, K, Ohme-Takagi, M, Tateno, M, Suzuki, M. | Deposit date: | 1998-03-13 | Release date: | 1999-03-23 | Last modified: | 2024-05-29 | Method: | SOLUTION NMR | Cite: | A novel mode of DNA recognition by a beta-sheet revealed by the solution structure of the GCC-box binding domain in complex with DNA. EMBO J., 17, 1998
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4W4Q
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![BU of 4w4q by Molmil](/molmil-images/mine/4w4q) | Glucose isomerase structure determined by serial femtosecond crystallography at SACLA | Descriptor: | CALCIUM ION, Xylose isomerase | Authors: | Nango, E, Tanaka, T, Sugahara, M, Suzuki, M, Iwata, S. | Deposit date: | 2014-08-15 | Release date: | 2014-11-05 | Last modified: | 2024-03-20 | Method: | X-RAY DIFFRACTION (2 Å) | Cite: | Grease matrix as a versatile carrier of proteins for serial crystallography Nat.Methods, 12, 2015
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6LCQ
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![BU of 6lcq by Molmil](/molmil-images/mine/6lcq) | Crystal structure of rice defensin OsAFP1 | Descriptor: | Defensin-like protein CAL1, PHOSPHATE ION | Authors: | Ochiai, A, Ogawa, K, Fukuda, M, Suzuki, M, Ito, K, Tanaka, T, Sagehashi, Y, Taniguchi, M. | Deposit date: | 2019-11-19 | Release date: | 2020-04-01 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (1.62 Å) | Cite: | Crystal structure of rice defensin OsAFP1 and molecular insight into lipid-binding. J.Biosci.Bioeng., 130, 2020
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7YRU
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![BU of 7yru by Molmil](/molmil-images/mine/7yru) | ALK2 antibody complex | Descriptor: | Activin receptor type-1, antibody heavy chain, antibody light chain | Authors: | Kawaguchi, Y, Nakamura, K, Suzuki, M, Tsuji, S, Katagiri, T. | Deposit date: | 2022-08-10 | Release date: | 2023-05-17 | Last modified: | 2023-06-07 | Method: | X-RAY DIFFRACTION (2.6 Å) | Cite: | A blocking monoclonal antibody reveals dimerization of intracellular domains of ALK2 associated with genetic disorders. Nat Commun, 14, 2023
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5KXV
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![BU of 5kxv by Molmil](/molmil-images/mine/5kxv) | Structure Proteinase K at 0.98 Angstroms | Descriptor: | CALCIUM ION, GLYCEROL, NITRATE ION, ... | Authors: | Masuda, T, Suzuki, M, Inoue, S, Numata, K, Sugahara, M. | Deposit date: | 2016-07-20 | Release date: | 2017-06-07 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (0.98 Å) | Cite: | Atomic resolution structure of serine protease proteinase K at ambient temperature. Sci Rep, 7, 2017
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3KLR
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![BU of 3klr by Molmil](/molmil-images/mine/3klr) | Bovine H-protein at 0.88 angstrom resolution | Descriptor: | GLYCEROL, Glycine cleavage system H protein, SULFATE ION | Authors: | Higashiura, A, Kurakane, T, Matsuda, M, Suzuki, M, Inaka, K, Sato, M, Tanaka, H, Fujiwara, K, Nakagawa, A. | Deposit date: | 2009-11-09 | Release date: | 2010-06-09 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (0.88 Å) | Cite: | High-resolution X-ray crystal structure of bovine H-protein at 0.88 A resolution Acta Crystallogr.,Sect.D, 66, 2010
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7D5M
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![BU of 7d5m by Molmil](/molmil-images/mine/7d5m) | Crystal structure of inositol dehydrogenase homolog complexed with NAD+ from Azotobacter vinelandii | Descriptor: | NICOTINAMIDE-ADENINE-DINUCLEOTIDE, Oxidoreductase | Authors: | Fukano, K, Ono, T, Suzuki, M, Takenoya, M, Ito, S, Sasaki, Y, Yajima, S. | Deposit date: | 2020-09-27 | Release date: | 2021-09-29 | Last modified: | 2023-11-29 | Method: | X-RAY DIFFRACTION (1.75 Å) | Cite: | Crystal structure of inositol dehydrogenase complexed with NAD+ from Azotobacter vinelandii To Be Published
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7D5N
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![BU of 7d5n by Molmil](/molmil-images/mine/7d5n) | Crystal structure of inositol dehydrogenase homolog complexed with NADH and myo-inositol from Azotobacter vinelandii | Descriptor: | 1,2,3,4,5,6-HEXAHYDROXY-CYCLOHEXANE, 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE, Oxidoreductase | Authors: | Fukano, K, Ono, T, Suzuki, M, Takenoya, M, Ito, S, Sasaki, Y, Yajima, S. | Deposit date: | 2020-09-27 | Release date: | 2021-09-29 | Last modified: | 2023-11-29 | Method: | X-RAY DIFFRACTION (1.8 Å) | Cite: | Crystal structure of inositol dehydrogenase complexed with NADH and myo-inositol from Azotobacter vinelandii To Be Published
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3VWU
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![BU of 3vwu by Molmil](/molmil-images/mine/3vwu) | |
3VWW
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5KXU
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![BU of 5kxu by Molmil](/molmil-images/mine/5kxu) | Structure Proteinase K determined by SACLA | Descriptor: | CALCIUM ION, NITRATE ION, Proteinase K | Authors: | Masuda, T, Suzuki, M, Inoue, S, Numata, K, Sugahara, M. | Deposit date: | 2016-07-20 | Release date: | 2017-06-07 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (1.2 Å) | Cite: | Atomic resolution structure of serine protease proteinase K at ambient temperature. Sci Rep, 7, 2017
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5GVO
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![BU of 5gvo by Molmil](/molmil-images/mine/5gvo) | Solution NMR structure of a new lasso peptide sphaericin | Descriptor: | Uncharacterized protein | Authors: | Hemmi, H, Kodani, S, Inoue, Y, Suzuki, M, Dohra, H, Suzuki, T, Ohnishi-Kameyama, M. | Deposit date: | 2016-09-06 | Release date: | 2017-04-05 | Method: | SOLUTION NMR | Cite: | Sphaericin, a Lasso Peptide from the Rare Actinomycete Planomonospora sphaerica Eur.J.Org.Chem., 2017
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6LFE
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![BU of 6lfe by Molmil](/molmil-images/mine/6lfe) | Rat-COMT, Nitecapone,SAM and Mg bond | Descriptor: | 3-(3,4-dihydroxy-5-nitrobenzylidene)pentane-2,4-dione, Catechol O-methyltransferase, DI(HYDROXYETHYL)ETHER, ... | Authors: | Takebe, K, Iijima, H, Suzuki, M. | Deposit date: | 2019-12-02 | Release date: | 2020-03-04 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (1.6 Å) | Cite: | Crystal Structure of Catechol O-Methyltransferase Complexed with Nitecapone. Chem Pharm Bull (Tokyo), 68, 2020
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3VU9
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![BU of 3vu9 by Molmil](/molmil-images/mine/3vu9) | Crystal Structure of Psy3-Csm2 complex | Descriptor: | 1,2-ETHANEDIOL, Chromosome segregation in meiosis protein 2, Platinum sensitivity protein 3 | Authors: | Tawaramoto, M, Sasanuma, H, Hosaka, H, Lao, J.P, Sanda, E, Suzuki, M, Yamashita, E, Hunter, N, Shinohara, M, Nakagawa, A, Shinohara, A. | Deposit date: | 2012-06-23 | Release date: | 2013-04-10 | Last modified: | 2024-03-20 | Method: | X-RAY DIFFRACTION (1.75 Å) | Cite: | A new protein complex promoting the assembly of Rad51 filaments Nat Commun, 4, 2013
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6LS1
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![BU of 6ls1 by Molmil](/molmil-images/mine/6ls1) | Ribonuclease from Hericium erinaceus active and GMP binding form | Descriptor: | DI(HYDROXYETHYL)ETHER, GUANOSINE, Ribonuclease T1, ... | Authors: | Takebe, K, Suzuki, M, Sangawa, T, Kobayashi, H, Itagaki, T. | Deposit date: | 2020-01-16 | Release date: | 2021-01-20 | Last modified: | 2023-11-29 | Method: | X-RAY DIFFRACTION (1.58 Å) | Cite: | Ribonuclease from Hericium erinaceus active and GMP binding form To Be Published
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3VQF
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![BU of 3vqf by Molmil](/molmil-images/mine/3vqf) | Crystal Structure Analysis of the PDZ Domain Derived from the Tight Junction Regulating Protein | Descriptor: | E3 ubiquitin-protein ligase LNX | Authors: | Akiyoshi, Y, Hamada, D, Goda, N, Tenno, T, Narita, H, Nakagawa, A, Furuse, M, Suzuki, M, Hiroaki, H. | Deposit date: | 2012-03-22 | Release date: | 2013-03-27 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (1.199 Å) | Cite: | Structural basis for down regulation of tight junction by PDZ-domain containing E3-Ubiquitin ligase To be Published
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