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PDB: 40 件
2ND5
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Lysine dimethylated FKBP12
分子名称: Peptidyl-prolyl cis-trans isomerase FKBP1A
著者Hattori, Y, Sebera, J, Sychrovsky, V, Furuita, K, Sugiki, T, Ohki, I, Ikegami, T, Kobayashi, N, Tanaka, Y, Fujiwara, T, Kojima, C.
登録日2016-05-05
公開日2017-05-17
実験手法SOLUTION NMR
主引用文献NMR Observation of Protein Surface Salt Bridges at Neutral pH
To be Published
5H6N
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BU of 5h6n by Molmil
DNA targeting ADP-ribosyltransferase Pierisin-1, autoinhibitory form
分子名称: Pierisin-1
著者Oda, T, Hirabayashi, H, Shikauchi, G, Takamura, R, Hiraga, K, Minami, H, Hashimoto, H, Yamamoto, M, Wakabayashi, K, Sugimura, T, Shimizu, T, Sato, M.
登録日2016-11-14
公開日2017-08-09
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Structural basis of autoinhibition and activation of the DNA-targeting ADP-ribosyltransferase pierisin-1
J. Biol. Chem., 292, 2017
5H6M
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DNA targeting ADP-ribosyltransferase Pierisin-1
分子名称: 1,2-ETHANEDIOL, Pierisin-1
著者Oda, T, Hirabayashi, H, Shikauchi, G, Takamura, R, Hiraga, K, Minami, H, Hashimoto, H, Yamamoto, M, Wakabayashi, K, Sugimura, T, Shimizu, T, Sato, M.
登録日2016-11-14
公開日2017-08-09
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Structural basis of autoinhibition and activation of the DNA-targeting ADP-ribosyltransferase pierisin-1
J. Biol. Chem., 292, 2017
5GIW
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Solution NMR structure of Humanin containing a D-isomerized serine residue
分子名称: Humanin
著者Furuita, K, Sugiki, T, Alsanousi, N, Fujiwara, T, Kojima, C.
登録日2016-06-25
公開日2016-07-20
最終更新日2023-06-14
実験手法SOLUTION NMR
主引用文献Solution NMR structure and inhibitory effect against amyloid-beta fibrillation of Humanin containing a d-isomerized serine residue
Biochem.Biophys.Res.Commun., 477, 2016
5H6J
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DNA targeting ADP-ribosyltransferase Pierisin-1 in complex with beta-NAD+
分子名称: NICOTINAMIDE-ADENINE-DINUCLEOTIDE, Pierisin-1
著者Oda, T, Hirabayashi, H, Shikauchi, G, Takamura, R, Hiraga, K, Minami, H, Hashimoto, H, Yamamoto, M, Wakabayashi, K, Sugimura, T, Shimizu, T, Sato, M.
登録日2016-11-14
公開日2017-08-09
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Structural basis of autoinhibition and activation of the DNA-targeting ADP-ribosyltransferase pierisin-1
J. Biol. Chem., 292, 2017
5H6K
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BU of 5h6k by Molmil
DNA targeting ADP-ribosyltransferase Pierisin-1
分子名称: 1,2-ETHANEDIOL, Pierisin-1
著者Oda, T, Hirabayashi, H, Shikauchi, G, Takamura, R, Hiraga, K, Minami, H, Hashimoto, H, Yamamoto, M, Wakabayashi, K, Sugimura, T, Shimizu, T, Sato, M.
登録日2016-11-14
公開日2017-08-09
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Structural basis of autoinhibition and activation of the DNA-targeting ADP-ribosyltransferase pierisin-1
J. Biol. Chem., 292, 2017
5H6L
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BU of 5h6l by Molmil
DNA targeting ADP-ribosyltransferase Pierisin-1 in complex with beta-NAD+
分子名称: 1,2-ETHANEDIOL, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, Pierisin-1
著者Oda, T, Hirabayashi, H, Shikauchi, G, Takamura, R, Hiraga, K, Minami, H, Hashimoto, H, Yamamoto, M, Wakabayashi, K, Sugimura, T, Shimizu, T, Sato, M.
登録日2016-11-14
公開日2017-08-09
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Structural basis of autoinhibition and activation of the DNA-targeting ADP-ribosyltransferase pierisin-1
J. Biol. Chem., 292, 2017
6IYQ
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BU of 6iyq by Molmil
Crystal structure of a DNA duplex cross-linked by 6-thioguanine-6-thioguanine disulfides
分子名称: DNA (5'-D(*CP*GP*CP*GP*AP*(S6G)P*(S6G)P*(BRU)P*CP*GP*CP*G)-3')
著者Kondo, J, Ono, A, Atsugi, T.
登録日2018-12-17
公開日2019-10-30
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (2.01 Å)
主引用文献Crystal structure of a DNA duplex cross-linked by 6-thioguanine-6-thioguanine disulfides: reversible formation and cleavage catalyzed by Cu(II) ion and glutathione
Rsc Adv, 2019
7DNS
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BU of 7dns by Molmil
Crystal structure of domain-swapped dimer of H5_Fold-0 Elsa; de novo designed protein with an asymmetric all-alpha topology
分子名称: GLYCEROL, de novo designed protein
著者Suzuki, K, Kobayashi, N, Murata, T, Sakuma, K, Kosugi, T, Koga, R, Koga, N.
登録日2020-12-10
公開日2021-07-28
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (2.327 Å)
主引用文献Design of complicated all-alpha protein structures
Nat.Struct.Mol.Biol., 2024
7VVI
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OXA-58 crystal structure of acylated meropenem complex
分子名称: (4R,5S)-3-{[(3S,5S)-5-(dimethylcarbamoyl)pyrrolidin-3-yl]sulfanyl}-5-[(2S,3R)-3-hydroxy-1-oxobutan-2-yl]-4-methyl-4,5-d ihydro-1H-pyrrole-2-carboxylic acid, Beta-lactamase, SULFATE ION
著者Saino, H, Sugiyabu, T, Miyano, M.
登録日2021-11-06
公開日2022-11-23
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献OXA-58 crystal structure of acylated meropenem complex
to be published
7BQE
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Solution NMR structure of NF3; de novo designed protein with a novel fold
分子名称: NF3
著者Kobayashi, N, Sugiki, T, Fujiwara, T, Minami, S, Koga, R, Chikenji, G, Koga, N.
登録日2020-03-24
公開日2021-03-24
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Exploration of novel alpha-beta-protein folds through de novo design
Nat.Struct.Mol.Biol., 2023
7XKM
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BU of 7xkm by Molmil
Crystal structure of DNA-Ag(I) rod comprising a one-dimensional array of 11 silver ions
分子名称: DNA (5'-D(*CP*GP*CP*GP*CP*(BRU)P*CP*(BRU)P*CP*GP*CP*G)-3'), SILVER ION
著者Kondo, J, Ono, A, Atsugi, T.
登録日2022-04-20
公開日2022-07-06
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (2.79 Å)
主引用文献A Novel Ag I -DNA Rod Comprising a One-Dimensional Array of 11 Silver Ions within a Double Helical Structure.
Angew.Chem.Int.Ed.Engl., 61, 2022
7VX3
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OXA-58 crystal structure of acylated meropenem complex 2
分子名称: (2S,3R,4S)-4-{[(3S,5S)-5-(dimethylcarbamoyl)pyrrolidin-3-yl]sulfanyl}-2-[(2S,3R)-3-hydroxy-1-oxobutan-2-yl]-3-methyl-3,4-dihydro-2H-pyrrole-5-carboxylic acid, (4R,5S)-3-{[(3S,5S)-5-(dimethylcarbamoyl)pyrrolidin-3-yl]sulfanyl}-5-[(2S,3R)-3-hydroxy-1-oxobutan-2-yl]-4-methyl-4,5-d ihydro-1H-pyrrole-2-carboxylic acid, Beta-lactamase, ...
著者Saino, H, Sugiyabu, T, Miyano, M.
登録日2021-11-12
公開日2022-11-23
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献OXA-58 crystal structure of acylated meropenem complex 2
To be published
7VX6
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BU of 7vx6 by Molmil
OXA-58 crystal structure of acylated meropenem complex 2
分子名称: (2S,3R,4S)-4-{[(3S,5S)-5-(dimethylcarbamoyl)pyrrolidin-3-yl]sulfanyl}-2-[(2S,3R)-3-hydroxy-1-oxobutan-2-yl]-3-methyl-3,4-dihydro-2H-pyrrole-5-carboxylic acid, (4R,5S)-3-{[(3S,5S)-5-(dimethylcarbamoyl)pyrrolidin-3-yl]sulfanyl}-5-[(2S,3R)-3-hydroxy-1-oxobutan-2-yl]-4-methyl-4,5-d ihydro-1H-pyrrole-2-carboxylic acid, Beta-lactamase, ...
著者Saino, H, Sugiyabu, T, Miyano, M.
登録日2021-11-12
公開日2022-11-23
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献OXA-58 crystal structure of acylated meropenem complex 2
To be published
3WBL
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BU of 3wbl by Molmil
Crystal structure of CDK2 in complex with pyrazolopyrimidine inhibitor
分子名称: ACETATE ION, Cyclin-dependent kinase 2, N~7~-(4-ethoxyphenyl)-6-methyl-N~5~-[(3S)-piperidin-3-yl]pyrazolo[1,5-a]pyrimidine-5,7-diamine
著者Fujino, A, Fukushima, K, Kubota, T, Kosugi, T, Takimoto-Kamimura, M.
登録日2013-05-20
公開日2013-10-30
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Crystal structure of human cyclin-dependent kinase-2 complex with MK2 inhibitor TEI-I01800: insight into the selectivity.
J.SYNCHROTRON RADIAT., 20, 2013
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件を2024-11-06に公開中

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