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PDB: 349 results

2OYM
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BU of 2oym by Molmil
Endo-glycoceramidase II from Rhodococcus sp.: five-membered iminocyclitol complex
Descriptor: Endoglycoceramidase II, N-{[(2R,3R,4R,5R)-3,4-DIHYDROXY-5-(HYDROXYMETHYL)PYRROLIDIN-2-YL]METHYL}-4-(DIMETHYLAMINO)BENZAMIDE, SODIUM ION
Authors:Caines, M.E.C, Strynadka, N.C.J.
Deposit date:2007-02-22
Release date:2007-03-06
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.86 Å)
Cite:The structural basis of glycosidase inhibition by five-membered iminocyclitols: the clan a glycoside hydrolase endoglycoceramidase as a model system.
Angew.Chem.Int.Ed.Engl., 46, 2007
1SN8
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BU of 1sn8 by Molmil
Crystal structure of the S1 domain of RNase E from E. coli (Pb derivative)
Descriptor: LEAD (II) ION, Ribonuclease E
Authors:Schubert, M, Edge, R.E, Lario, P, Cook, M.A, Strynadka, N.C.J, Mackie, G.A, McIntosh, L.P.
Deposit date:2004-03-10
Release date:2004-08-17
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural characterization of the RNase E S1 domain and identification of its oligonucleotide-binding and dimerization interfaces.
J.Mol.Biol., 341, 2004
1SMX
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Crystal structure of the S1 domain of RNase E from E. coli (native)
Descriptor: Ribonuclease E
Authors:Schubert, M, Edge, R.E, Lario, P, Cook, M.A, Strynadka, N.C.J, Mackie, G.A, McIntosh, L.P.
Deposit date:2004-03-09
Release date:2004-08-17
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural characterization of the RNase E S1 domain and identification of its oligonucleotide-binding and dimerization interfaces.
J.Mol.Biol., 341, 2004
4QDD
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BU of 4qdd by Molmil
Crystal structure of 3-ketosteroid-9-alpha-hydroxylase 5 (KshA5) from R. rhodochrous in complex with 1,4-30Q-CoA
Descriptor: 3-ketosteroid 9alpha-hydroxylase oxygenase, FE (II) ION, FE2/S2 (INORGANIC) CLUSTER, ...
Authors:Penfield, J, Worrall, L.J, Strynadka, N.C, Eltis, L.D.
Deposit date:2014-05-13
Release date:2014-07-30
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Substrate specificities and conformational flexibility of 3-ketosteroid 9 alpha-hydroxylases.
J.Biol.Chem., 289, 2014
1RO8
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Structural analysis of the sialyltransferase CstII from Campylobacter jejuni in complex with a substrate analogue, cytidine-5'-monophosphate
Descriptor: CYTIDINE-5'-MONOPHOSPHATE, alpha-2,3/8-sialyltransferase
Authors:Chiu, C.P, Watts, A.G, Lairson, L.L, Gilbert, M, Lim, D, Wakarchuk, W.W, Withers, S.G, Strynadka, N.C.
Deposit date:2003-12-01
Release date:2004-02-03
Last modified:2021-10-27
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Structural analysis of the sialyltransferase CstII from Campylobacter jejuni in complex with a substrate analog.
Nat.Struct.Mol.Biol., 11, 2004
4QDC
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BU of 4qdc by Molmil
Crystal structure of 3-ketosteroid-9-alpha-hydroxylase 5 (KshA5) from R. rhodochrous in complex with FE2/S2 (INORGANIC) CLUSTER
Descriptor: 3-ketosteroid 9alpha-hydroxylase oxygenase, 4-ANDROSTENE-3-17-DIONE, FE (III) ION, ...
Authors:Penfield, J, Worrall, L.J, Strynadka, N.C, Eltis, L.D.
Deposit date:2014-05-13
Release date:2014-07-30
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Substrate specificities and conformational flexibility of 3-ketosteroid 9 alpha-hydroxylases.
J.Biol.Chem., 289, 2014
4QCK
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Crystal structure of 3-ketosteroid-9-alpha-hydroxylase (KshA) from M. tuberculosis in complex with 4-androstene-3,17-dione
Descriptor: 3-ketosteroid-9-alpha-monooxygenase oxygenase subunit, 4-ANDROSTENE-3-17-DIONE, FE (III) ION, ...
Authors:Penfield, J, Worrall, L.J, Strynadka, N.C, Eltis, L.D.
Deposit date:2014-05-12
Release date:2014-07-30
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.46 Å)
Cite:Substrate specificities and conformational flexibility of 3-ketosteroid 9 alpha-hydroxylases.
J.Biol.Chem., 289, 2014
4QDF
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Crystal structure of apo KshA5 and KshA1 in complex with 1,4-30Q-CoA from R. rhodochrous
Descriptor: 3-ketosteroid 9alpha-hydroxylase oxygenase, FE (II) ION, FE2/S2 (INORGANIC) CLUSTER, ...
Authors:Penfield, J, Worrall, L.J, Strynadka, N.C, Eltis, L.D.
Deposit date:2014-05-13
Release date:2014-07-30
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.43 Å)
Cite:Substrate specificities and conformational flexibility of 3-ketosteroid 9 alpha-hydroxylases.
J.Biol.Chem., 289, 2014
1RO7
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BU of 1ro7 by Molmil
Structural analysis of the sialyltransferase CstII from Campylobacter jejuni in complex with a substrate analogue, CMP-3FNeuAc.
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, CYTIDINE-5'-MONOPHOSPHATE-3-FLUORO-N-ACETYL-NEURAMINIC ACID, alpha-2,3/8-sialyltransferase
Authors:Chiu, C.P, Watts, A.G, Lairson, L.L, Gilbert, M, Lim, D, Wakarchuk, W.W, Withers, S.G, Strynadka, N.C.
Deposit date:2003-12-01
Release date:2004-02-03
Last modified:2021-10-27
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural analysis of the sialyltransferase CstII from Campylobacter jejuni in complex with a substrate analog.
Nat.Struct.Mol.Biol., 11, 2004
1SLJ
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BU of 1slj by Molmil
Solution structure of the S1 domain of RNase E from E. coli
Descriptor: Ribonuclease E
Authors:Schubert, M, Edge, R.E, Lario, P, Cook, M.A, Strynadka, N.C.J, Mackie, G.A, McIntosh, L.P.
Deposit date:2004-03-05
Release date:2004-08-17
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Structural characterization of the RNase E S1 domain and identification of its oligonucleotide-binding and dimerization interfaces.
J.Mol.Biol., 341, 2004
3GR1
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BU of 3gr1 by Molmil
Periplasmic domain of the T3SS inner membrane protein PrgH from S.typhimurium (fragment 170-392)
Descriptor: Protein prgH
Authors:Yip, C.K, Vockovic, M, Yu, A.C, Strynadka, N.C.J.
Deposit date:2009-03-24
Release date:2009-05-19
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:A conserved structural motif mediates formation of the periplasmic rings in the type III secretion system.
Nat.Struct.Mol.Biol., 16, 2009
3GMY
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BU of 3gmy by Molmil
Crystal Structure of Beta-Lactamse Inhibitory Protein-Like Protein (BLP), Selenomethionine Derivative
Descriptor: BLP
Authors:Gretes, M, Strynadka, N.C.J.
Deposit date:2009-03-15
Release date:2009-03-31
Last modified:2017-11-01
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Insights into positive and negative requirements for protein-protein interactions by crystallographic analysis of the beta-lactamase inhibitory proteins BLIP, BLIP-I, and BLP.
J.Mol.Biol., 389, 2009
7TC5
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BU of 7tc5 by Molmil
All Phe-Azurin variant - F15Y
Descriptor: Azurin, COPPER (II) ION, NITRATE ION, ...
Authors:Fedoretz-Maxwell, B.P, Worrall, L.J, Strynadka, N.C.J, Warren, J.J.
Deposit date:2021-12-22
Release date:2022-06-22
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:The Impact of Second Coordination Sphere Methionine-Aromatic Interactions in Copper Proteins.
Inorg.Chem., 61, 2022
7TC6
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BU of 7tc6 by Molmil
All Phe-Azurin variant - F15W
Descriptor: Azurin, COPPER (II) ION, NITRATE ION
Authors:Fedoretz-Maxwell, B.P, Worrall, L.J, Strynadka, N.C.J, Warren, J.J.
Deposit date:2021-12-22
Release date:2022-06-22
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:The Impact of Second Coordination Sphere Methionine-Aromatic Interactions in Copper Proteins.
Inorg.Chem., 61, 2022
3GMX
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BU of 3gmx by Molmil
Crystal Structure of Beta-Lactamse Inhibitory Protein-Like Protein (BLP) at 1.05 Angstrom Resolution
Descriptor: ACETATE ION, BLP
Authors:Gretes, M, Strynadka, N.C.J.
Deposit date:2009-03-15
Release date:2009-03-31
Last modified:2017-11-01
Method:X-RAY DIFFRACTION (1.05 Å)
Cite:Insights into positive and negative requirements for protein-protein interactions by crystallographic analysis of the beta-lactamase inhibitory proteins BLIP, BLIP-I, and BLP.
J.Mol.Biol., 389, 2009
3GR0
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BU of 3gr0 by Molmil
Periplasmic domain of the T3SS inner membrane protein PrgH from S.typhimurium (fragment 170-362)
Descriptor: Protein prgH
Authors:Yip, C.K, Vockovic, M, Yu, A.C, Strynadka, N.C.J.
Deposit date:2009-03-24
Release date:2009-05-19
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:A conserved structural motif mediates formation of the periplasmic rings in the type III secretion system.
Nat.Struct.Mol.Biol., 16, 2009
3GMV
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BU of 3gmv by Molmil
Crystal Structure of Beta-Lactamse Inhibitory Protein-I (BLIP-I) in Apo Form
Descriptor: Beta-lactamase inhibitory protein BLIP-I, TRIS(HYDROXYETHYL)AMINOMETHANE
Authors:Lim, D.C, Gretes, M, Strynadka, N.C.J.
Deposit date:2009-03-15
Release date:2009-03-31
Last modified:2017-11-01
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Insights into positive and negative requirements for protein-protein interactions by crystallographic analysis of the beta-lactamase inhibitory proteins BLIP, BLIP-I, and BLP.
J.Mol.Biol., 389, 2009
3GMW
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BU of 3gmw by Molmil
Crystal Structure of Beta-Lactamse Inhibitory Protein-I (BLIP-I) in Complex with TEM-1 Beta-Lactamase
Descriptor: B-lactamase, Beta-lactamase inhibitory protein BLIP-I, PHOSPHATE ION
Authors:Lim, D.C, Gretes, M, Strynadka, N.C.J.
Deposit date:2009-03-15
Release date:2009-03-31
Last modified:2017-11-01
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Insights into positive and negative requirements for protein-protein interactions by crystallographic analysis of the beta-lactamase inhibitory proteins BLIP, BLIP-I, and BLP.
J.Mol.Biol., 389, 2009
3GR5
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Periplasmic domain of the outer membrane secretin EscC from enteropathogenic E.coli (EPEC)
Descriptor: EscC, SULFATE ION
Authors:Yip, C.K, Vockovic, M, Strynadka, N.C.J.
Deposit date:2009-03-24
Release date:2009-05-19
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:A conserved structural motif mediates formation of the periplasmic rings in the type III secretion system.
Nat.Struct.Mol.Biol., 16, 2009
3HOE
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BU of 3hoe by Molmil
Crystal Structure of Surface Lipoprotein
Descriptor: TbpB
Authors:Moraes, T.F, Yu, R.H, Schryvers, A.B, Strynadka, N.C.J.
Deposit date:2009-06-02
Release date:2009-10-06
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.303 Å)
Cite:Insights into the bacterial transferrin receptor: the structure of transferrin-binding protein B from Actinobacillus pleuropneumoniae.
Mol.Cell, 35, 2009
3HOL
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BU of 3hol by Molmil
The Structure of Intact Ap-TbpB (N and C lobes)
Descriptor: TbpB
Authors:Moraes, T.F, Yu, R.H, Schryvers, A.B, Strynadka, N.C.J.
Deposit date:2009-06-02
Release date:2009-10-06
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.98 Å)
Cite:Insights into the bacterial transferrin receptor: the structure of transferrin-binding protein B from Actinobacillus pleuropneumoniae.
Mol.Cell, 35, 2009
3IR6
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BU of 3ir6 by Molmil
Crystal structure of NarGHI mutant NarG-H49S
Descriptor: (1S)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PENTANOYLOXY)METHYL]ETHYL OCTANOATE, FE3-S4 CLUSTER, GUANOSINE-5'-DIPHOSPHATE, ...
Authors:Bertero, M.G, Rothery, R.A, Weiner, J.H, Strynadka, N.C.J.
Deposit date:2009-08-21
Release date:2010-01-05
Last modified:2021-10-13
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Protein crystallography reveals a role for the FS0 cluster of Escherichia coli nitrate reductase A (NarGHI) in enzyme maturation.
J.Biol.Chem., 285, 2010
3IR5
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BU of 3ir5 by Molmil
Crystal structure of NarGHI mutant NarG-H49C
Descriptor: (1S)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PENTANOYLOXY)METHYL]ETHYL OCTANOATE, FE3-S4 CLUSTER, IRON/SULFUR CLUSTER, ...
Authors:Bertero, M.G, Rothery, R.A, Weiner, J.H, Strynadka, N.C.J.
Deposit date:2009-08-21
Release date:2010-01-05
Last modified:2021-10-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Protein crystallography reveals a role for the FS0 cluster of Escherichia coli nitrate reductase A (NarGHI) in enzyme maturation.
J.Biol.Chem., 285, 2010
3IR7
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BU of 3ir7 by Molmil
Crystal structure of NarGHI mutant NarG-R94S
Descriptor: (1S)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PENTANOYLOXY)METHYL]ETHYL OCTANOATE, FE3-S4 CLUSTER, IRON/SULFUR CLUSTER, ...
Authors:Bertero, M.G, Rothery, R.A, Weiner, J.H, Strynadka, N.C.J.
Deposit date:2009-08-21
Release date:2010-01-05
Last modified:2021-10-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Protein crystallography reveals a role for the FS0 cluster of Escherichia coli nitrate reductase A (NarGHI) in enzyme maturation.
J.Biol.Chem., 285, 2010
3J1X
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BU of 3j1x by Molmil
A refined model of the prototypical Salmonella typhimurium T3SS basal body reveals the molecular basis for its assembly
Descriptor: Protein PrgH
Authors:Sgourakis, N.G, Bergeron, J.R.C, Worrall, L.J, Strynadka, N.C.J, Baker, D.
Deposit date:2012-07-10
Release date:2013-05-22
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY (11.7 Å)
Cite:A Refined Model of the Prototypical Salmonella SPI-1 T3SS Basal Body Reveals the Molecular Basis for Its Assembly.
Plos Pathog., 9, 2013

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