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PDB: 29 results
3G9C
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BU of 3g9c by Molmil
Crystal structure of the product Bacillus anthracis glmS ribozyme
Descriptor: 2-amino-2-deoxy-6-O-phosphono-alpha-D-glucopyranose, GLMS RIBOZYME, MAGNESIUM ION, ...
Authors:Strobel, S.A, Cochrane, J.C, Lipchock, S.V, Smith, K.D.
Deposit date:2009-02-13
Release date:2009-11-03
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Structural and chemical basis for glucosamine 6-phosphate binding and activation of the glmS ribozyme
Biochemistry, 48, 2009
3G8T
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BU of 3g8t by Molmil
Crystal structure of the G33A mutant Bacillus anthracis glmS ribozyme bound to GlcN6P
Descriptor: 2-amino-2-deoxy-6-O-phosphono-alpha-D-glucopyranose, MAGNESIUM ION, RNA (5'-R(*AP*(A2M)P*GP*CP*GP*CP*CP*AP*GP*AP*AP*CP*U)-3'), ...
Authors:Strobel, S.A, Cochrane, J.C, Lipchock, S.V, Smith, K.D.
Deposit date:2009-02-12
Release date:2009-11-03
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structural and chemical basis for glucosamine 6-phosphate binding and activation of the glmS ribozyme
Biochemistry, 48, 2009
3G96
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BU of 3g96 by Molmil
Crystal structure of the Bacillus anthracis glmS ribozyme bound to MaN6P
Descriptor: 2-amino-2-deoxy-6-O-phosphono-alpha-D-mannopyranose, GLMS RIBOZYME, MAGNESIUM ION, ...
Authors:Strobel, S.A, Cochrane, J.C, Lipchock, S.V, Smith, K.D.
Deposit date:2009-02-12
Release date:2009-11-03
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (3.01 Å)
Cite:Structural and chemical basis for glucosamine 6-phosphate binding and activation of the glmS ribozyme
Biochemistry, 48, 2009
3G8S
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BU of 3g8s by Molmil
Crystal structure of the pre-cleaved Bacillus anthracis glmS ribozyme
Descriptor: GLMS RIBOZYME, MAGNESIUM ION, RNA (5'-R(*AP*(A2M)P*GP*CP*GP*CP*CP*AP*GP*AP*AP*CP*U)-3'), ...
Authors:Strobel, S.A, Cochrane, J.C, Lipchock, S.V, Smith, K.D.
Deposit date:2009-02-12
Release date:2009-11-03
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Structural and chemical basis for glucosamine 6-phosphate binding and activation of the glmS ribozyme
Biochemistry, 48, 2009
3L3C
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BU of 3l3c by Molmil
Crystal structure of the Bacillus anthracis glmS ribozyme bound to Glc6P
Descriptor: 6-O-phosphono-alpha-D-glucopyranose, GLMS RIBOZYME, MAGNESIUM ION, ...
Authors:Strobel, S.A, Cochrane, J.C, Lipchock, S.V, Smith, K.D.
Deposit date:2009-12-16
Release date:2009-12-29
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.85 Å)
Cite:Structural and chemical basis for glucosamine 6-phosphate binding and activation of the glmS ribozyme
Biochemistry, 48, 2009
3MXH
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BU of 3mxh by Molmil
Native structure of a c-di-GMP riboswitch from V. cholerae
Descriptor: 9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one), MAGNESIUM ION, U1 small nuclear ribonucleoprotein A, ...
Authors:Strobel, S.A, Smith, K.D.
Deposit date:2010-05-07
Release date:2010-08-25
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural and biochemical determinants of ligand binding by the c-di-GMP riboswitch .
Biochemistry, 49, 2010
3MUT
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BU of 3mut by Molmil
Crystal Structure of the G20A/C92U mutant c-di-GMP riboswith bound to c-di-GMP
Descriptor: 9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one), G20A/C92U mutant c-di-GMP riboswitch, MAGNESIUM ION, ...
Authors:Strobel, S.A, Smith, K.D.
Deposit date:2010-05-03
Release date:2010-08-25
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structural and biochemical determinants of ligand binding by the c-di-GMP riboswitch .
Biochemistry, 49, 2010
3MUR
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BU of 3mur by Molmil
Crystal Structure of the C92U mutant c-di-GMP riboswith bound to c-di-GMP
Descriptor: 9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one), C92U mutant c-di-GMP riboswitch, MAGNESIUM ION, ...
Authors:Strobel, S.A, Smith, K.D.
Deposit date:2010-05-03
Release date:2010-08-25
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structural and biochemical determinants of ligand binding by the c-di-GMP riboswitch .
Biochemistry, 49, 2010
3MUM
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BU of 3mum by Molmil
Crystal Structure of the G20A mutant c-di-GMP riboswith bound to c-di-GMP
Descriptor: 9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one), G20A mutant c-di-GMP Riboswitch, MAGNESIUM ION, ...
Authors:Strobel, S.A, Smith, K.D.
Deposit date:2010-05-03
Release date:2010-08-25
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Structural and biochemical determinants of ligand binding by the c-di-GMP riboswitch .
Biochemistry, 49, 2010
3MUV
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BU of 3muv by Molmil
Crystal Structure of the G20A/C92U mutant c-di-GMP riboswith bound to c-di-AMP
Descriptor: (2R,3R,3aS,5R,7aR,9R,10R,10aS,12R,14aR)-2,9-bis(6-amino-9H-purin-9-yl)octahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8 ]tetraoxadiphosphacyclododecine-3,5,10,12-tetrol 5,12-dioxide, G20A/C92U mutant c-di-GMP riboswitch, MAGNESIUM ION, ...
Authors:Strobel, S.A, Smith, K.D.
Deposit date:2010-05-03
Release date:2010-08-25
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Structural and biochemical determinants of ligand binding by the c-di-GMP riboswitch .
Biochemistry, 49, 2010
1KQS
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BU of 1kqs by Molmil
The Haloarcula marismortui 50S Complexed with a Pretranslocational Intermediate in Protein Synthesis
Descriptor: 23S RRNA, 5S RRNA, 6-AMINOHEXANOIC ACID, ...
Authors:Schmeing, T.M, Seila, A.C, Hansen, J.L, Freeborn, B, Soukup, J.K, Scaringe, S.A, Strobel, S.A, Moore, P.B, Steitz, T.A.
Deposit date:2002-01-07
Release date:2002-02-22
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:A pre-translocational intermediate in protein synthesis observed in crystals of enzymatically active 50S subunits.
Nat.Struct.Biol., 9, 2002
1U6B
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BU of 1u6b by Molmil
CRYSTAL STRUCTURE OF A SELF-SPLICING GROUP I INTRON WITH BOTH EXONS
Descriptor: 197-MER, 5'-R(*AP*AP*GP*CP*CP*AP*CP*AP*CP*AP*AP*AP*CP*CP*AP*GP*AP*CP*GP *GP*CP*C)-3', 5'-R(*CP*AP*(5MU))-3', ...
Authors:Adams, P.L, Stahley, M.R, Kosek, A.B, Wang, J, Strobel, S.A.
Deposit date:2004-07-29
Release date:2004-08-10
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Crystal Structure of a Self-Splicing Group I Intron with Both Exons.
Nature, 430, 2004
5T83
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BU of 5t83 by Molmil
Structure of a guanidine-I riboswitch from S. acidophilus
Descriptor: GUANIDINE, IRIDIUM HEXAMMINE ION, MAGNESIUM ION, ...
Authors:Reiss, C.W, Xiong, Y, Strobel, S.A.
Deposit date:2016-09-06
Release date:2017-01-11
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (2.71 Å)
Cite:Structural Basis for Ligand Binding to the Guanidine-I Riboswitch.
Structure, 25, 2017
1ZZN
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BU of 1zzn by Molmil
Crystal structure of a group I intron/two exon complex that includes all catalytic metal ion ligands.
Descriptor: 197-MER, 5'-R(*AP*AP*GP*CP*CP*AP*CP*AP*CP*AP*AP*AP*CP*CP*AP*GP*AP*CP*GP*GP*CP*C)-3', 5'-R(*CP*AP*(5MU))-3', ...
Authors:Stahley, M.R, Strobel, S.A.
Deposit date:2005-06-14
Release date:2005-08-30
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (3.37 Å)
Cite:Structural evidence for a two-metal-ion mechanism of group I intron splicing.
Science, 309, 2005
2HBN
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BU of 2hbn by Molmil
Crystallization of the Tl+-form of the Oxytricha nova G-quadruplex
Descriptor: 5'-D(*GP*GP*GP*GP*TP*TP*TP*TP*GP*GP*GP*G)-3', THALLIUM (I) ION
Authors:Gill, M.L, Strobel, S.A, Loria, J.P.
Deposit date:2006-06-14
Release date:2006-09-19
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Crystallization and characterization of the thallium form of the Oxytricha nova G-quadruplex.
Nucleic Acids Res., 34, 2006
2AKG
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BU of 2akg by Molmil
Thallium form of the G-Quadruplex from Oxytricha Nova, d(G4T4G4)2
Descriptor: 5'-D(*GP*GP*GP*GP*TP*TP*TP*TP*GP*GP*GP*G)-3'
Authors:Gill, M.L, Strobel, S.A, Loria, J.P.
Deposit date:2005-08-03
Release date:2005-11-08
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:(205)Tl NMR methods for the characterization of monovalent cation binding to nucleic acids
J.Am.Chem.Soc., 127, 2005
3UD4
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BU of 3ud4 by Molmil
The C92U mutant c-di-GMP-I riboswitch bound to GpA
Descriptor: MAGNESIUM ION, RNA (5'-R(*GP*A)-3'), RNA (92-MER), ...
Authors:Smith, K.D, Strobel, S.A.
Deposit date:2011-10-27
Release date:2012-01-04
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structural and biochemical characterization of linear dinucleotide analogues bound to the c-di-GMP-I aptamer.
Biochemistry, 51, 2012
3UD3
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BU of 3ud3 by Molmil
The C92U mutant c-di-GMP-I riboswitch bound to pGpA
Descriptor: MAGNESIUM ION, RNA (5'-R(P*GP*A)-3'), RNA (92-MER), ...
Authors:Smith, K.D, Strobel, S.A.
Deposit date:2011-10-27
Release date:2012-01-04
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Structural and biochemical characterization of linear dinucleotide analogues bound to the c-di-GMP-I aptamer.
Biochemistry, 51, 2012
3UCZ
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BU of 3ucz by Molmil
The c-di-GMP-I riboswitch bound to GpG
Descriptor: MAGNESIUM ION, RNA (5'-R(*GP*G)-3'), RNA (92-MER), ...
Authors:Smith, K.D, Strobel, S.A.
Deposit date:2011-10-27
Release date:2012-01-04
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structural and biochemical characterization of linear dinucleotide analogues bound to the c-di-GMP-I aptamer.
Biochemistry, 51, 2012
3UCU
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BU of 3ucu by Molmil
The c-di-GMP-I riboswitch bound to pGpG
Descriptor: MAGNESIUM ION, RNA (92-MER), U1 small nuclear ribonucleoprotein A, ...
Authors:Smith, K.D, Strobel, S.A.
Deposit date:2011-10-27
Release date:2012-01-04
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structural and biochemical characterization of linear dinucleotide analogues bound to the c-di-GMP-I aptamer.
Biochemistry, 51, 2012
3Q3Z
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BU of 3q3z by Molmil
Structure of a c-di-GMP-II riboswitch from C. acetobutylicum bound to c-di-GMP
Descriptor: 9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one), MAGNESIUM ION, c-di-GMP-II riboswitch
Authors:Smith, K.D, Shanahan, C.A, Moore, E.L, Simon, A.C, Strobel, S.A.
Deposit date:2010-12-22
Release date:2011-05-11
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.51 Å)
Cite:Structural basis of differential ligand recognition by two classes of bis-(3'-5')-cyclic dimeric guanosine monophosphate-binding riboswitches.
Proc.Natl.Acad.Sci.USA, 108, 2011
3IIN
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BU of 3iin by Molmil
Plasticity of the kink turn structural motif
Descriptor: DNA/RNA (5'-R(*AP*AP*GP*CP*CP*AP*CP*AP*CP*AP*GP*AP*CP*C)-D(P*AP*GP*A)-R(P*CP*GP*GP*CP*C)-3'), DNA/RNA (5'-R(*CP*A)-D(P*T)-3'), Group I intron, ...
Authors:Lipchock, S.V, Strobel, S.A, Antonioli, A.H, Cochrane, J.C.
Deposit date:2009-08-02
Release date:2010-03-09
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (4.18 Å)
Cite:Plasticity of the RNA kink turn structural motif.
Rna, 16, 2010
3BO2
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BU of 3bo2 by Molmil
A relaxed active site following exon ligation by a group I intron
Descriptor: Group I intron P9, MAGNESIUM ION, RNA (5'-R(*AP*AP*GP*CP*CP*AP*CP*AP*CP*AP*AP*AP*CP*CP*AP*G)-3'), ...
Authors:Lipchock, S.V, Strobel, S.A.
Deposit date:2007-12-17
Release date:2008-04-01
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (3.31 Å)
Cite:A relaxed active site after exon ligation by the group I intron
Proc.Natl.Acad.Sci.Usa, 105, 2008
3BO3
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BU of 3bo3 by Molmil
A relaxed active site following exon ligation by a group I intron
Descriptor: Group I intron P9, MAGNESIUM ION, POTASSIUM ION, ...
Authors:Lipchock, S.V, Strobel, S.A.
Deposit date:2007-12-17
Release date:2008-04-01
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (3.4 Å)
Cite:A relaxed active site after exon ligation by the group I intron
Proc.Natl.Acad.Sci.Usa, 105, 2008
3BO4
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BU of 3bo4 by Molmil
A relaxed active site following exon ligation by a group I intron
Descriptor: DNA/RNA (5'-R(*AP*AP*GP*CP*CP*AP*CP*AP*CP*AP*AP*AP*CP*CP*A)-D(P*DG)-3'), DNA/RNA (5'-R(*CP*A)-D(P*DU)-R(P*AP*CP*GP*GP*CP*C)-3'), Group I intron P9, ...
Authors:Lipchock, S.V, Strobel, S.A.
Deposit date:2007-12-17
Release date:2008-04-01
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (3.33 Å)
Cite:A relaxed active site after exon ligation by the group I intron
Proc.Natl.Acad.Sci.Usa, 105, 2008

 

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