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PDB: 91 results

6VYF
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Cryo-EM structure of Plasmodium vivax hexokinase (Open state)
Descriptor: Phosphotransferase
Authors:Srivastava, S.S, Darling, J.E, Suryadi, J, Morris, J.C, Drew, M.E, Subramaniam, S.
Deposit date:2020-02-26
Release date:2020-05-06
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Plasmodium vivax and human hexokinases share similar active sites but display distinct quaternary architectures
Iucrj, 7, 2020
6VYG
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Cryo-EM structure of Plasmodium vivax hexokinase (Closed state)
Descriptor: Phosphotransferase
Authors:Srivastava, S.S, Darling, J.E, Suryadi, J, Morris, J.C, Drew, M.E, Subramaniam, S.
Deposit date:2020-02-26
Release date:2020-05-06
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:Plasmodium vivax and human hexokinases share similar active sites but display distinct quaternary architectures
Iucrj, 7, 2020
5HT7
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BU of 5ht7 by Molmil
Crystal structure of a transition-metal-ion-binding betagamma-crystallin from Methanosaeta thermophila
Descriptor: FE (II) ION, Uncharacterized protein
Authors:Srivastava, S.S, Sankaranarayanan, R.
Deposit date:2016-01-26
Release date:2017-02-01
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.862 Å)
Cite:A Transition Metal-Binding, Trimeric beta gamma-Crystallin from Methane-Producing Thermophilic Archaea, Methanosaeta thermophila
Biochemistry, 56, 2017
5H4E
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BU of 5h4e by Molmil
Crystal structure of a beta-1,3-glucanase domain (GH64) from Clostridium beijerinckii
Descriptor: beta 1-3 glucanase
Authors:Srivastava, S.S, Sankaranarayanan, R.
Deposit date:2016-10-31
Release date:2017-11-08
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.863 Å)
Cite:Crystal structure of a beta-1,3-glucanase domain (GH64) from Clostridium beijerinckii
To Be Published
4BXI
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BU of 4bxi by Molmil
Crystal structure of ATP binding domain of AgrC from Staphylococcus aureus
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, ACCESSORY GENE REGULATOR PROTEIN C, ACETATE ION, ...
Authors:Srivastava, S.K, Rajasree, K, Gopal, B.
Deposit date:2013-07-12
Release date:2014-06-04
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Influence of the Agrc-Agra Complex in the Response Time of Staphylococcus Aureus Quorum Sensing
J.Bacteriol., 196, 2014
3SO1
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BU of 3so1 by Molmil
Crystal structure of a double mutant T41S T82S of a betagamma-crystallin domain from Clostridium beijerinckii
Descriptor: CALCIUM ION, Clostrillin, SULFATE ION
Authors:Srivastava, S.S, Sankaranarayanan, R.
Deposit date:2011-06-29
Release date:2011-11-16
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Decoding the molecular design principles underlying Ca(2+) binding to beta gamma-crystallin motifs
J.Mol.Biol., 415, 2012
3Q8Y
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BU of 3q8y by Molmil
Crystal structure of Staphylococcus aureus nucleoside diphosphate kinase complexed with ADP and Vanadate
Descriptor: ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, Nucleoside diphosphate kinase, ...
Authors:Srivastava, S.K, Rajasree, K, Gopal, B.
Deposit date:2011-01-07
Release date:2011-07-27
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Conformational basis for substrate recognition and regulation of catalytic activity in Staphylococcus aureus nucleoside di-phosphate kinase.
Biochim.Biophys.Acta, 2011
3Q89
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Crystal structure of Staphylococcus aureus nucleoside diphosphate kinase complexed with CDP
Descriptor: CYTIDINE-5'-DIPHOSPHATE, MAGNESIUM ION, Nucleoside diphosphate kinase
Authors:Srivastava, S.K, Rajasree, K, Gopal, B.
Deposit date:2011-01-06
Release date:2011-07-27
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Conformational basis for substrate recognition and regulation of catalytic activity in Staphylococcus aureus nucleoside di-phosphate kinase.
Biochim.Biophys.Acta, 2011
3Q8U
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BU of 3q8u by Molmil
Crystal structure of Staphylococcus aureus nucleoside diphosphate kinase complexed with ADP
Descriptor: ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, Nucleoside diphosphate kinase
Authors:Srivastava, S.K, Rajasree, K, Gopal, B.
Deposit date:2011-01-07
Release date:2011-07-27
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.22 Å)
Cite:Conformational basis for substrate recognition and regulation of catalytic activity in Staphylococcus aureus nucleoside di-phosphate kinase.
Biochim.Biophys.Acta, 1814, 2011
3Q8V
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BU of 3q8v by Molmil
Crystal structure of Staphylococcus aureus nucleoside diphosphate kinase complexed with UDP
Descriptor: MAGNESIUM ION, Nucleoside diphosphate kinase, URIDINE-5'-DIPHOSPHATE
Authors:Srivastava, S.K, Rajasree, K, Gopal, B.
Deposit date:2011-01-07
Release date:2011-07-27
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Conformational basis for substrate recognition and regulation of catalytic activity in Staphylococcus aureus nucleoside di-phosphate kinase.
Biochim.Biophys.Acta, 2011
3SNZ
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BU of 3snz by Molmil
Crystal structure of a mutant W39D of a betagamma-crystallin domain from Clostridium beijerinckii
Descriptor: CALCIUM ION, Clostrillin
Authors:Srivastava, S.S, Sankaranarayanan, R.
Deposit date:2011-06-29
Release date:2011-11-16
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2 Å)
Cite:Decoding the molecular design principles underlying Ca(2+) binding to beta gamma-crystallin motifs
J.Mol.Biol., 415, 2012
3SO0
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BU of 3so0 by Molmil
Crystal structure of a mutant T41S of a betagamma-crystallin domain from Clostridium beijerinckii
Descriptor: CALCIUM ION, Clostrillin
Authors:Srivastava, S.S, Sankaranarayanan, R.
Deposit date:2011-06-29
Release date:2011-11-16
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.93 Å)
Cite:Decoding the molecular design principles underlying Ca(2+) binding to beta gamma-crystallin motifs
J.Mol.Biol., 415, 2012
3SNY
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BU of 3sny by Molmil
Crystal structure of a mutant T82R of a betagamma-crystallin domain from Clostridium beijerinckii
Descriptor: CALCIUM ION, Clostrillin, SULFATE ION
Authors:Srivastava, S.S, Sankaranarayanan, R.
Deposit date:2011-06-29
Release date:2011-11-16
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Decoding the molecular design principles underlying Ca(2+) binding to beta gamma-crystallin motifs
J.Mol.Biol., 415, 2012
5Z6D
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BU of 5z6d by Molmil
Crystal structure of Abundant Perithecial Protein (APP) from Neurospora crassa
Descriptor: DUF1881 domain-containing protein
Authors:Srivastava, S.S, Sankaranarayanan, R.
Deposit date:2018-01-22
Release date:2019-01-23
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Interface interactions between beta gamma-crystallin domain and Ig-like domain render Ca2+-binding site inoperative in abundant perithecial protein of Neurospora crassa.
Mol.Microbiol., 110, 2018
5Z6E
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BU of 5z6e by Molmil
Crystal structure of a beta gamma-crystallin domain of Abundant Perithecial Protein (APP) from Neurospora crassa in the Ca2+-bound form
Descriptor: CALCIUM ION, DUF1881 domain-containing protein, POTASSIUM ION
Authors:Srivastava, S.S, Sankaranarayanan, R.
Deposit date:2018-01-22
Release date:2019-01-23
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.864 Å)
Cite:Interface interactions between beta gamma-crystallin domain and Ig-like domain render Ca2+-binding site inoperative in abundant perithecial protein of Neurospora crassa.
Mol.Microbiol., 110, 2018
3Q86
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BU of 3q86 by Molmil
Crystal structure of Staphylococcus aureus nucleoside diphosphate kinase complexed with GTP
Descriptor: GUANOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, Nucleoside diphosphate kinase
Authors:Srivastava, S.K, Rajasree, K, Gopal, B.
Deposit date:2011-01-06
Release date:2011-07-27
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.38 Å)
Cite:Conformational basis for substrate recognition and regulation of catalytic activity in Staphylococcus aureus nucleoside di-phosphate kinase.
Biochim.Biophys.Acta, 1814, 2011
3Q83
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BU of 3q83 by Molmil
Crystal structure of Staphylococcus aureus nucleoside diphosphate kinase
Descriptor: Nucleoside diphosphate kinase
Authors:Srivastava, S.K, Rajasree, K, Gopal, B.
Deposit date:2011-01-06
Release date:2011-07-27
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Conformational basis for substrate recognition and regulation of catalytic activity in Staphylococcus aureus nucleoside di-phosphate kinase.
Biochim.Biophys.Acta, 1814, 2011
1ZAU
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BU of 1zau by Molmil
Adenylation domain of NAD+ dependent DNA ligase from M.tuberculosis
Descriptor: ADENOSINE MONOPHOSPHATE, DNA ligase
Authors:Srivastava, S.K, Ramachandran, R.
Deposit date:2005-04-07
Release date:2005-07-05
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (3.15 Å)
Cite:NAD+-dependent DNA Ligase (Rv3014c) from Mycobacterium tuberculosis: CRYSTAL STRUCTURE OF THE ADENYLATION DOMAIN AND IDENTIFICATION OF NOVEL INHIBITORS
J.Biol.Chem., 280, 2005
7RJT
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BU of 7rjt by Molmil
Aplysia Slo1 with Barium
Descriptor: (1R)-2-{[(S)-{[(2S)-2,3-dihydroxypropyl]oxy}(hydroxy)phosphoryl]oxy}-1-[(hexadecanoyloxy)methyl]ethyl (9Z)-octadec-9-enoate, BARIUM ION, BK channel, ...
Authors:Zhu, J, Srivastava, S, Cachau, R, Holmgren, M.
Deposit date:2021-07-21
Release date:2022-06-22
Last modified:2023-04-05
Method:ELECTRON MICROSCOPY (2.93 Å)
Cite:CryoEM structure of Aplysia Slo1 with 10 mM Ba2+ at 2.93 A
To Be Published
7RK6
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BU of 7rk6 by Molmil
Aplysia Slo1 with Barium
Descriptor: (1R)-2-{[(S)-{[(2S)-2,3-dihydroxypropyl]oxy}(hydroxy)phosphoryl]oxy}-1-[(hexadecanoyloxy)methyl]ethyl (9Z)-octadec-9-enoate, BARIUM ION, BK channel, ...
Authors:Zhu, J, Srivastava, S, Cachau, R, Holmgren, M.
Deposit date:2021-07-22
Release date:2022-06-22
Last modified:2023-04-05
Method:ELECTRON MICROSCOPY (2.91 Å)
Cite:CryoEM structure of Aplysia Slo1 with 0 mM Ba2+ at 2.91 A
To Be Published
4FDF
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BU of 4fdf by Molmil
Structural insights into putative molybdenum cofactor biosynthesis protein C (MoaC2) from Mycobacterium tuberculosis H37Rv
Descriptor: Molybdenum cofactor biosynthesis protein C 2
Authors:Srivastava, V.K, Srivastava, S, Arora, A, Pratap, J.V.
Deposit date:2012-05-28
Release date:2013-04-10
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.202 Å)
Cite:Structural Insights into Putative Molybdenum Cofactor Biosynthesis Protein C (MoaC2) from Mycobacterium tuberculosis H37Rv.
Plos One, 8, 2013
1KEB
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BU of 1keb by Molmil
Crystal Structure of Double Mutant M37L,P40S E.coli Thioredoxin
Descriptor: COPPER (II) ION, Thioredoxin 1
Authors:Rudresh, Jain, R, Dani, V, Mitra, A, Srivastava, S, Sarma, S.P, Varadarajan, R, Ramakumar, S.
Deposit date:2001-11-15
Release date:2002-11-13
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural Consequences of Replacement of an alpha-helical Pro Residue in E.coli Thioredoxin
PROTEIN ENG., 15, 2002
7MJJ
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BU of 7mjj by Molmil
Cryo-EM structure of the SARS-CoV-2 N501Y mutant spike protein ectodomain bound to Fab ab1 (class 1)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Fab ab1 Heavy Chain, ...
Authors:Zhu, X, Mannar, D, Srivastava, S.S, Berezuk, A.M, Demers, J.P, Saville, J.W, Leopold, K, Li, W, Dimitrov, D.S, Tuttle, K.S, Zhou, S, Chittori, S, Subramaniam, S.
Deposit date:2021-04-20
Release date:2021-05-12
Method:ELECTRON MICROSCOPY (3.32 Å)
Cite:Cryo-electron microscopy structures of the N501Y SARS-CoV-2 spike protein in complex with ACE2 and 2 potent neutralizing antibodies.
Plos Biol., 19, 2021
7MJL
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BU of 7mjl by Molmil
Cryo-EM structure of the SARS-CoV-2 N501Y mutant spike protein ectodomain bound to Fab ab1 (focused refinement of RBD and Fab ab1)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Fab ab1 Heavy Chain, Fab ab1 Light Chain, ...
Authors:Zhu, X, Mannar, D, Srivastava, S.S, Berezuk, A.M, Demers, J.P, Saville, J.W, Leopold, K, Li, W, Dimitrov, D.S, Tuttle, K.S, Zhou, S, Chittori, S, Subramaniam, S.
Deposit date:2021-04-20
Release date:2021-05-12
Method:ELECTRON MICROSCOPY (2.95 Å)
Cite:Cryo-electron microscopy structures of the N501Y SARS-CoV-2 spike protein in complex with ACE2 and 2 potent neutralizing antibodies.
Plos Biol., 19, 2021
7MJH
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BU of 7mjh by Molmil
Cryo-EM structure of the SARS-CoV-2 N501Y mutant spike protein ectodomain bound to VH ab8
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein, ...
Authors:Zhu, X, Mannar, D, Srivastava, S.S, Berezuk, A.M, Demers, J.P, Saville, J.W, Leopold, K, Li, W, Dimitrov, D.S, Tuttle, K.S, Zhou, S, Chittori, S, Subramaniam, S.
Deposit date:2021-04-20
Release date:2021-05-12
Method:ELECTRON MICROSCOPY (2.66 Å)
Cite:Cryo-electron microscopy structures of the N501Y SARS-CoV-2 spike protein in complex with ACE2 and 2 potent neutralizing antibodies.
Plos Biol., 19, 2021

 

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