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PDB: 28 件
5CG0
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Crystal structure of Spodoptera frugiperda Beta-glycosidase
分子名称: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
著者Tamaki, F.K, Souza, D.P, Souza, V.P, Farah, S.C, Marana, S.R.
登録日2015-07-08
公開日2015-12-09
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (2.09 Å)
主引用文献Using the Amino Acid Network to Modulate the Hydrolytic Activity of beta-Glycosidases.
PLoS ONE, 11, 2016
6XRZ
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BU of 6xrz by Molmil
The 28-kDa Frameshift Stimulation Element from the SARS-CoV-2 RNA Genome
分子名称: Frameshift Stimulation Element from the SARS-CoV-2 RNA Genome
著者Zhang, K, Zheludev, I, Hagey, R, Wu, M, Haslecker, R, Hou, Y, Kretsch, R, Pintilie, G, Rangan, R, Kladwang, W, Li, S, Pham, E, Souibgui, C, Baric, R, Sheahan, T, Souza, V, Glenn, J, Chiu, W, Das, R.
登録日2020-07-14
公開日2020-08-19
最終更新日2024-03-06
実験手法ELECTRON MICROSCOPY (6.9 Å)
主引用文献Cryo-electron Microscopy and Exploratory Antisense Targeting of the 28-kDa Frameshift Stimulation Element from the SARS-CoV-2 RNA Genome.
Biorxiv, 2020
1WKM
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BU of 1wkm by Molmil
THE PRODUCT BOUND FORM OF THE MN(II)LOADED METHIONINE AMINOPEPTIDASE FROM HYPERTHERMOPHILE PYROCOCCUS FURIOSUS
分子名称: MANGANESE (II) ION, METHIONINE, Methionine aminopeptidase
著者Copik, A.J, Nocek, B.P, Jang, S.B, Swierczek, S.I, Ruebush, S, Meng, L, D'souza, V.M, Peters, J.W, Bennett, B, Holz, R.C.
登録日2004-06-01
公開日2005-02-22
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献EPR and X-ray crystallographic characterization of the product-bound form of the MnII-loaded methionyl aminopeptidase from Pyrococcus furiosus
Biochemistry, 44, 2005
5A7G
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BU of 5a7g by Molmil
Comparison of the structure and activity of glycosylated and aglycosylated Human Carboxylesterase 1
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, LIVER CARBOXYLESTERASE 1
著者Arena de Souza, V, Scott, D.J, Charlton, M, Walsh, M.A, Owen, R.J.
登録日2015-07-04
公開日2016-01-13
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (1.48 Å)
主引用文献Comparison of the Structure and Activity of Glycosylated and Aglycosylated Human Carboxylesterase 1.
Plos One, 10, 2015
5A7F
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BU of 5a7f by Molmil
Comparison of the structure and activity of glycosylated and aglycosylated Human Carboxylesterase 1
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, LIVER CARBOXYLESTERASE 1, PHOSPHATE ION
著者Arena de Souza, V, Scott, D.J, Charlton, M, Walsh, M.A, Owen, R.J.
登録日2015-07-03
公開日2016-01-13
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (1.86 Å)
主引用文献Comparison of the Structure and Activity of Glycosylated and Aglycosylated Human Carboxylesterase 1.
Plos One, 10, 2015
1U6P
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BU of 1u6p by Molmil
NMR Structure of the MLV encapsidation signal bound to the Nucleocapsid protein
分子名称: 101-MER, Gag polyprotein, ZINC ION
著者D'Souza, V, Summers, M.F.
登録日2004-07-30
公開日2004-11-02
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献Structural basis for packaging the dimeric genome of Moloney murine leukaemia virus
Nature, 431, 2004
1S9S
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BU of 1s9s by Molmil
SOLUTION STRUCTURE OF MLV PSI SITE
分子名称: MLV Psi encapsidation site
著者D'Souza, V, Dey, A, Habib, D, Summers, M.F.
登録日2004-02-05
公開日2004-04-06
最終更新日2022-03-02
実験手法SOLUTION NMR
主引用文献NMR structure of the 101-nucleotide core encapsidation signal of the Moloney Murine Leukemia Virus.
J.Mol.Biol., 337, 2004
6MCF
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BU of 6mcf by Molmil
Solution structure of 7SK stem-loop 1 with HIV-1 Tat RNA Binding Domain
分子名称: 7SK Stem-loop 1 RNA, Protein Tat
著者Pham, V.V, D'Souza, V.M.
登録日2018-08-31
公開日2018-10-31
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献HIV-1 Tat interactions with cellular 7SK and viral TAR RNAs identifies dual structural mimicry.
Nat Commun, 9, 2018
6MCE
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BU of 6mce by Molmil
Solution structure of HIV-1 TAR with Tat RNA Binding Domain
分子名称: Protein Tat, TAR RNA
著者Pham, V.V, D'Souza, V.M.
登録日2018-08-31
公開日2018-10-31
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献HIV-1 Tat interactions with cellular 7SK and viral TAR RNAs identifies dual structural mimicry.
Nat Commun, 9, 2018
6MCI
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BU of 6mci by Molmil
Solution structure of 7SK stem-loop 1
分子名称: 7SK RNA
著者Pham, V.V, D'Souza, V.M.
登録日2018-08-31
公開日2018-10-31
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献HIV-1 Tat interactions with cellular 7SK and viral TAR RNAs identifies dual structural mimicry.
Nat Commun, 9, 2018
5A7H
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BU of 5a7h by Molmil
Comparison of the structure and activity of glycosylated and aglycosylated Human Carboxylesterase 1
分子名称: IODIDE ION, LIVER CARBOXYLESTERASE 1
著者Arena de Souza, V, Scott, D.J, Charlton, M, Walsh, M.A, Owen, R.J.
登録日2015-07-04
公開日2016-01-13
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (2.01 Å)
主引用文献Comparison of the Structure and Activity of Glycosylated and Aglycosylated Human Carboxylesterase 1.
Plos One, 10, 2015
7T1N
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BU of 7t1n by Molmil
Solution structure of 7SK stem-loop 1 with HEXIM Arginine Rich Motif
分子名称: HEXIM Arginine Rich Motif, RNA (56-MER)
著者Pham, V.V, Gao, M, D'Souza, V.M.
登録日2021-12-02
公開日2022-09-14
実験手法SOLUTION NMR, SOLUTION SCATTERING
主引用文献A structure-based mechanism for displacement of the HEXIM adapter from 7SK small nuclear RNA.
Commun Biol, 5, 2022
7T1O
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BU of 7t1o by Molmil
Solution structure of 7SK stem-loop 1 with HIV-1 Tat Subtype G Arginine Rich Motif
分子名称: 7SK stem-loop 1 RNA (56-MER), Tat Subtype G Arginine Rich Motif
著者Pham, V.V, Gao, M, D'Souza, V.M.
登録日2021-12-02
公開日2022-09-14
実験手法SOLUTION NMR, SOLUTION SCATTERING
主引用文献A structure-based mechanism for displacement of the HEXIM adapter from 7SK small nuclear RNA.
Commun Biol, 5, 2022
7T1P
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BU of 7t1p by Molmil
Solution structure of 7SK stem-loop 1 with HIV-1 Tat Finland Arginine Rich Motif
分子名称: RNA (56-MER), Tat Finland Arginine Rich Motif
著者Pham, V.V, Gao, M, D'Souza, V.M.
登録日2021-12-02
公開日2022-09-14
実験手法SOLUTION NMR, SOLUTION SCATTERING
主引用文献A structure-based mechanism for displacement of the HEXIM adapter from 7SK small nuclear RNA.
Commun Biol, 5, 2022
7KUC
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BU of 7kuc by Molmil
Ax1 Domain of VEGF Readthrough Element
分子名称: VEGF Ax1
著者D'Souza, V.M, Wagner, N.O, Edwards, J.M.
登録日2020-11-24
公開日2022-06-01
最終更新日2023-06-14
実験手法SOLUTION NMR
主引用文献Stop codon readthrough in VEGF-A is regulated by complex signals
To Be Published
7KUB
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BU of 7kub by Molmil
Au1 Domain of VEGF Readthrough Element
分子名称: RNA (60-MER)
著者D'Souza, V.M, Wagner, N.O, Edwards, J.M.
登録日2020-11-24
公開日2022-06-01
実験手法SOLUTION NMR
主引用文献Stop codon readthrough in VEGF-A is regulated by complex signals
To Be Published
7KUD
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BU of 7kud by Molmil
Ax2 Domain of VEGF Readthrough Element
分子名称: VEGF Ax2
著者D'Souza, V.M, Wagner, N.O, Edwards, J.M.
登録日2020-11-24
公開日2022-06-01
最終更新日2023-06-14
実験手法SOLUTION NMR
主引用文献Stop codon readthrough in VEGF-A is regulated by complex signals
To Be Published
2MS0
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BU of 2ms0 by Molmil
Solution NMR structure pf tRNApro:MLV-Nucleocapsid (1:2) Complex
分子名称: Nucleocapsid protein p10, ZINC ION, tRNApro
著者D'Souza, V, Yildiz, Z.
登録日2014-07-19
公開日2014-09-17
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献A structure-based mechanism for tRNA and retroviral RNA remodelling during primer annealing.
Nature, 515, 2014
2NBX
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BU of 2nbx by Molmil
Solution structure of the J-K region of EMCV IRES
分子名称: IRES RNA (108-MER)
著者Imai, S, D'Souza, V, Wagner, G.
登録日2016-03-16
公開日2016-08-10
最終更新日2023-06-14
実験手法SOLUTION NMR
主引用文献An accurately preorganized IRES RNA structure enables eIF4G capture for initiation of viral translation.
Nat. Struct. Mol. Biol., 23, 2016
2NBZ
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BU of 2nbz by Molmil
Solution structure of the K domain of EMCV IRES
分子名称: IRES RNA 40-MER
著者Imai, S, D'Souza, V, Wagner, G.
登録日2016-03-16
公開日2016-08-10
最終更新日2023-06-14
実験手法SOLUTION NMR
主引用文献An accurately preorganized IRES RNA structure enables eIF4G capture for initiation of viral translation.
Nat. Struct. Mol. Biol., 23, 2016
2NC0
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BU of 2nc0 by Molmil
Solution structure of the St domain of EMCV IRES
分子名称: IRES RNA (28-MER)
著者Imai, S, D'Souza, V, Wagner, G.
登録日2016-03-16
公開日2016-08-10
最終更新日2023-06-14
実験手法SOLUTION NMR
主引用文献An accurately preorganized IRES RNA structure enables eIF4G capture for initiation of viral translation.
Nat. Struct. Mol. Biol., 23, 2016
2NC1
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BU of 2nc1 by Molmil
Solution structure of the delta-J-delta-K domain of EMCV IRES
分子名称: IRES RNA (67-MER)
著者Imai, S, D'Souza, V, Wagner, G.
登録日2016-03-16
公開日2016-08-10
最終更新日2023-06-14
実験手法SOLUTION NMR
主引用文献An accurately preorganized IRES RNA structure enables eIF4G capture for initiation of viral translation.
Nat. Struct. Mol. Biol., 23, 2016
2MS1
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BU of 2ms1 by Molmil
Solution NMR structure of tRNApro:MLV Nucleocapsid Protein (1:1) Complex
分子名称: Nucleocapsid protein p10, ZINC ION, tRNApro
著者D'Souza, V, Yildiz, Z.
登録日2014-07-19
公開日2014-09-10
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献A structure-based mechanism for tRNA and retroviral RNA remodelling during primer annealing.
Nature, 515, 2014
2MQT
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BU of 2mqt by Molmil
Solution NMR structure of the U5-primer binding site (U5-PBS) domain of murine leukemia virus RNA genome
分子名称: RNA (68-MER)
著者D'Souza, V, Yildiz, Z.
登録日2014-06-26
公開日2014-09-10
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献A structure-based mechanism for tRNA and retroviral RNA remodelling during primer annealing.
Nature, 515, 2014
2NBY
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BU of 2nby by Molmil
Solution structure of the J domain of EMCV IRES
分子名称: IRES RNA (39-MER)
著者Imai, S, D'Souza, V, Wagner, G.
登録日2016-03-16
公開日2016-08-10
最終更新日2023-06-14
実験手法SOLUTION NMR
主引用文献An accurately preorganized IRES RNA structure enables eIF4G capture for initiation of viral translation.
Nat. Struct. Mol. Biol., 23, 2016

 

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