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PDB: 458 results

5N0T
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BU of 5n0t by Molmil
Crystal structure of OphA-DeltaC6 mutant Y76F in complex with SAM
Descriptor: Peptide N-methyltransferase, S-ADENOSYLMETHIONINE
Authors:Song, H, Naismith, J.H.
Deposit date:2017-02-03
Release date:2018-02-14
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.78 Å)
Cite:A molecular mechanism for the enzymatic methylation of nitrogen atoms within peptide bonds.
Sci Adv, 4, 2018
6R00
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BU of 6r00 by Molmil
OphA DeltaC6 V404F complex with SAH
Descriptor: PHE-PRO-TRP-MVA-ILE-MVA-PHE-GLY-VAL-ILE-GLY-VAL-ILE-GLY, Peptide N-methyltransferase, S-ADENOSYL-L-HOMOCYSTEINE
Authors:Song, H, Naismith, J.H.
Deposit date:2019-03-12
Release date:2020-04-01
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.74 Å)
Cite:Substrate Plasticity of a Fungal Peptide alpha-N-Methyltransferase.
Acs Chem.Biol., 15, 2020
6QZY
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BU of 6qzy by Molmil
full length OphA V406P in complex with SAH
Descriptor: ASN-GLY-PHE-PRO-TRP-MVA-ILE-MVA-VAL-GLY-PRO-ILE-GLY, MAGNESIUM ION, Peptide N-methyltransferase, ...
Authors:Song, H, Naismith, J.H.
Deposit date:2019-03-12
Release date:2020-04-01
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.61 Å)
Cite:Substrate Plasticity of a Fungal Peptide alpha-N-Methyltransferase.
Acs Chem.Biol., 15, 2020
6QZZ
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BU of 6qzz by Molmil
full length OphA V404E in complex with SAH
Descriptor: Peptide N-methyltransferase, S-ADENOSYL-L-HOMOCYSTEINE
Authors:Song, H, Naismith, J.H.
Deposit date:2019-03-12
Release date:2020-04-01
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Substrate Plasticity of a Fungal Peptide alpha-N-Methyltransferase.
Acs Chem.Biol., 15, 2020
2VUY
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BU of 2vuy by Molmil
Crystal structure of Glycogen Debranching exzyme TreX from Sulfolobus solfatarius
Descriptor: GLYCOGEN OPERON PROTEIN GLGX
Authors:Song, H.-N, Yoon, S.-M, Cha, H.-J, Park, K.-H, Woo, E.-J.
Deposit date:2008-06-02
Release date:2008-07-29
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structural Insight Into the Bifunctional Mechanism of the Glycogen-Debranching Enzyme Trex from the Archaeon Sulfolobus Solfataricus.
J.Biol.Chem., 283, 2008
6PC1
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BU of 6pc1 by Molmil
Crystal structure of Helicobacter pylori PPX/GppA (E143A) in complex with ppGpp
Descriptor: (2S)-2-hydroxybutanedioic acid, 1,2-ETHANEDIOL, GUANOSINE-5',3'-TETRAPHOSPHATE, ...
Authors:Song, H, Wang, C, Shaw, G.X, Ji, X.
Deposit date:2019-06-15
Release date:2019-11-20
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.76 Å)
Cite:Structure and activity of PPX/GppA homologs from Escherichia coli and Helicobacter pylori.
Febs J., 287, 2020
6PC0
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BU of 6pc0 by Molmil
Crystal structure of Helicobacter pylori PPX/GppA
Descriptor: (2S)-2-hydroxybutanedioic acid, 1,2-ETHANEDIOL, D-MALATE, ...
Authors:Song, H, Wang, C, Shaw, G.X, Ji, X.
Deposit date:2019-06-15
Release date:2019-11-20
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structure and activity of PPX/GppA homologs from Escherichia coli and Helicobacter pylori.
Febs J., 287, 2020
6PBZ
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BU of 6pbz by Molmil
Crystal structure of Escherichia coli GppA
Descriptor: CHLORIDE ION, Guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase
Authors:Song, H, Shaw, G.X, Wang, C, Ji, X.
Deposit date:2019-06-15
Release date:2019-11-20
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.475 Å)
Cite:Structure and activity of PPX/GppA homologs from Escherichia coli and Helicobacter pylori.
Febs J., 287, 2020
6PC3
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BU of 6pc3 by Molmil
Crystal structure of Helicobacter pylori PPX/GppA in complex with GSP
Descriptor: 1,2-ETHANEDIOL, 5'-GUANOSINE-DIPHOSPHATE-MONOTHIOPHOSPHATE, CHLORIDE ION, ...
Authors:Song, H, Wang, C, Shaw, G.X, Ji, X.
Deposit date:2019-06-15
Release date:2019-11-20
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structure and activity of PPX/GppA homologs from Escherichia coli and Helicobacter pylori.
Febs J., 287, 2020
6PC2
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BU of 6pc2 by Molmil
Crystal structure of Helicobacter pylori PPX/GppA in complex with GNP
Descriptor: Guanosine pentaphosphate phosphohydrolase, MAGNESIUM ION, PHOSPHATE ION, ...
Authors:Song, H, Wang, C, Shaw, G.X, Ji, X.
Deposit date:2019-06-15
Release date:2019-11-20
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Structure and activity of PPX/GppA homologs from Escherichia coli and Helicobacter pylori.
Febs J., 287, 2020
1FPZ
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BU of 1fpz by Molmil
CRYSTAL STRUCTURE ANALYSIS OF KINASE ASSOCIATED PHOSPHATASE (KAP) WITH A SUBSTITUTION OF THE CATALYTIC SITE CYSTEINE (CYS140) TO A SERINE
Descriptor: CYCLIN-DEPENDENT KINASE INHIBITOR 3, SULFATE ION
Authors:Song, H, Hanlon, N, Brown, N.R, Noble, M.E.M, Johnson, L.N, Barford, D.
Deposit date:2000-09-01
Release date:2001-05-09
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2 Å)
Cite:Phosphoprotein-protein interactions revealed by the crystal structure of kinase-associated phosphatase in complex with phosphoCDK2.
Mol.Cell, 7, 2001
5T16
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BU of 5t16 by Molmil
Crystal structure of yeast RNase III (Rnt1p) complexed with a non-hydrolyzable RNA substrate analog
Descriptor: 1,2-ETHANEDIOL, RNA substrate analog, Ribonuclease 3
Authors:Song, H, Ji, X.
Deposit date:2016-08-18
Release date:2017-02-08
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.783 Å)
Cite:The Functional Cycle of Rnt1p: Five Consecutive Steps of Double-Stranded RNA Processing by a Eukaryotic RNase III.
Structure, 25, 2017
4QIJ
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BU of 4qij by Molmil
Crystal structure of MenB from Mycobacteria tuberculosis in complex with 1-HNA-CoA
Descriptor: 1,4-Dihydroxy-2-naphthoyl-CoA synthase, 1-hydroxy-2-naphthoyl-CoA
Authors:Song, H.G, Sung, H.P, Tse, Y.S, Guo, Z.H.
Deposit date:2014-05-31
Release date:2014-11-19
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Ligand-dependent active-site closure revealed in the crystal structure of Mycobacterium tuberculosis MenB complexed with product analogues
Acta Crystallogr.,Sect.D, 70, 2014
2VR5
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BU of 2vr5 by Molmil
Crystal structure of Trex from Sulfolobus Solfataricus in complex with acarbose intermediate and glucose
Descriptor: 4-O-(4,6-dideoxy-4-{[(1S,2S,3S,4R,5S)-2,3,4-trihydroxy-5-(hydroxymethyl)cyclohexyl]amino}-alpha-D-glucopyranosyl)-beta-D-glucopyranose, GLYCEROL, GLYCOGEN OPERON PROTEIN GLGX, ...
Authors:Song, H.-N, Yoon, S.-M, Lee, S.-J, Cha, H.-J, Park, K.-H, Woo, E.-J.
Deposit date:2008-03-26
Release date:2008-07-29
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structural Insight Into the Bifunctional Mechanism of the Glycogen-Debranching Enzyme Trex from the Archaeon Sulfolobus Solfataricus.
J.Biol.Chem., 283, 2008
8SSW
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BU of 8ssw by Molmil
Crystal structure of DEAD-box RNA helicase DDX3X in complex with ADP at pre-unwound state
Descriptor: 1,2-ETHANEDIOL, ADENOSINE-5'-DIPHOSPHATE, ATP-dependent RNA helicase DDX3X, ...
Authors:Song, H, Ji, X.
Deposit date:2023-05-09
Release date:2024-05-22
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal structure of DEAD-box RNA helicase DDX3X in complex with ADP at pre-unwound state
To be published
1EFC
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BU of 1efc by Molmil
INTACT ELONGATION FACTOR FROM E.COLI
Descriptor: GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, PROTEIN (ELONGATION FACTOR)
Authors:Song, H, Parsons, M.R, Rowsell, S, Leonard, G, Phillips, S.E.V.
Deposit date:1998-11-24
Release date:1999-03-18
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Crystal structure of intact elongation factor EF-Tu from Escherichia coli in GDP conformation at 2.05 A resolution.
J.Mol.Biol., 285, 1999
1FQ1
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BU of 1fq1 by Molmil
CRYSTAL STRUCTURE OF KINASE ASSOCIATED PHOSPHATASE (KAP) IN COMPLEX WITH PHOSPHO-CDK2
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, CELL DIVISION PROTEIN KINASE 2, CYCLIN-DEPENDENT KINASE INHIBITOR 3, ...
Authors:Song, H, Hanlon, N, Brown, N.R, Noble, M.E.M, Johnson, L.N, Barford, D.
Deposit date:2000-09-01
Release date:2001-05-09
Last modified:2018-03-14
Method:X-RAY DIFFRACTION (3 Å)
Cite:Phosphoprotein-protein interactions revealed by the crystal structure of kinase-associated phosphatase in complex with phosphoCDK2.
Mol.Cell, 7, 2001
1GMW
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BU of 1gmw by Molmil
Structure of UreE
Descriptor: COPPER (II) ION, UREE
Authors:Song, H.K, Mulrooney, S.B, Huber, R, Hausinger, R.
Deposit date:2001-09-24
Release date:2001-11-28
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Crystal Structure of Klebsiella Aerogenes Uree, a Nickel-Binding Metallochaperone for Urease Activation
J.Biol.Chem., 276, 2001
1GMU
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BU of 1gmu by Molmil
Structure of UreE
Descriptor: UREE
Authors:Song, H.K, Mulrooney, S.B, Huber, R, Hausinger, R.
Deposit date:2001-09-24
Release date:2001-11-28
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Crystal Structure of Klebsiella Aerogenes Uree, a Nickel-Binding Metallochaperone for Urease Activation.
J.Biol.Chem., 276, 2001
3ZHK
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BU of 3zhk by Molmil
The crystal structure of single domain antibody 2x1 scaffold
Descriptor: MG2X1 SCAFFOLD ANTIBODY, SULFATE ION
Authors:Song, H.-N, Woo, E.-J, Lim, H.-K.
Deposit date:2012-12-22
Release date:2014-01-08
Last modified:2014-07-16
Method:X-RAY DIFFRACTION (1.962 Å)
Cite:Directed Evolution of Human Heavy Chain Variable Domain (Vh) Using in Vivo Protein Fitness Filter.
Plos One, 9, 2014
3ZHD
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BU of 3zhd by Molmil
The crystal structure of single domain antibody 8-4 scaffold.
Descriptor: MG8-4 SCAFFOLD ANTIBODY, SULFATE ION
Authors:Song, H.-N, Woo, E.-J, Lim, H.-K.
Deposit date:2012-12-21
Release date:2014-01-08
Last modified:2014-07-16
Method:X-RAY DIFFRACTION (1.962 Å)
Cite:Directed Evolution of Human Heavy Chain Variable Domain (Vh) Using in Vivo Protein Fitness Filter.
Plos One, 9, 2014
3ZHL
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BU of 3zhl by Molmil
The crystal structure of single domain antibody 8-14 scaffold
Descriptor: GLYCEROL, MG8-14 SCAFFOLD ANTIBODY
Authors:Song, H.-N, Woo, E.-J, Lim, H.-K.
Deposit date:2012-12-22
Release date:2014-01-08
Last modified:2014-07-16
Method:X-RAY DIFFRACTION (2.47 Å)
Cite:Directed Evolution of Human Heavy Chain Variable Domain (Vh) Using in Vivo Protein Fitness Filter.
Plos One, 9, 2014
4QII
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BU of 4qii by Molmil
Crystal Structure of type II MenB from Mycobacteria tuberculosis
Descriptor: 1,4-Dihydroxy-2-naphthoyl-CoA synthase, Salicylyl CoA, TRIETHYLENE GLYCOL
Authors:Song, H.G, Tse, Y.S, Sung, H.P, Guo, Z.H.
Deposit date:2014-05-31
Release date:2014-11-19
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.64 Å)
Cite:Ligand-dependent active-site closure revealed in the crystal structure of Mycobacterium tuberculosis MenB complexed with product analogues
Acta Crystallogr.,Sect.D, 70, 2014
2VNC
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BU of 2vnc by Molmil
Crystal structure of Glycogen Debranching enzyme TreX from Sulfolobus solfataricus
Descriptor: GLYCOGEN OPERON PROTEIN GLGX
Authors:Song, H.-N, Yoon, S.-M, Cha, H, Park, K.-T, Woo, E.-J.
Deposit date:2008-02-04
Release date:2008-07-29
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structural Insight Into the Bifunctional Mechanism of the Glycogen-Debranching Enzyme Trex from the Archaeon Sulfolobus Solfataricus.
J.Biol.Chem., 283, 2008
6TSC
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BU of 6tsc by Molmil
OphMA I407P complex with SAH
Descriptor: GLY-PHE-PRO-TRP-MVA-ILE-MVA-VAL-GLY-VAL-PRO-GLY, Peptide N-methyltransferase, S-ADENOSYL-L-HOMOCYSTEINE
Authors:Song, H, Naismith, J.H.
Deposit date:2019-12-20
Release date:2020-06-24
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.19 Å)
Cite:Substrate Plasticity of a Fungal Peptide alpha-N-Methyltransferase.
Acs Chem.Biol., 15, 2020

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