Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 225 results

1CI3
DownloadVisualize
BU of 1ci3 by Molmil
CYTOCHROME F FROM THE B6F COMPLEX OF PHORMIDIUM LAMINOSUM
Descriptor: HEME C, PROTEIN (CYTOCHROME F), ZINC ION
Authors:Carrell, C.J, Schlarb, B.G, Howe, C.J, Bendall, D.S, Cramer, W.A, Smith, J.L.
Deposit date:1999-04-07
Release date:1999-08-11
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structure of the soluble domain of cytochrome f from the cyanobacterium Phormidium laminosum.
Biochemistry, 38, 1999
3BOF
DownloadVisualize
BU of 3bof by Molmil
Cobalamin-dependent methionine synthase (1-566) from Thermotoga maritima complexed with Zn2+ and Homocysteine
Descriptor: 2-AMINO-4-MERCAPTO-BUTYRIC ACID, 5-methyltetrahydrofolate S-homocysteine methyltransferase, POTASSIUM ION, ...
Authors:Koutmos, M, Smith, J.L, Ludwig, M.L.
Deposit date:2007-12-17
Release date:2008-03-11
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Metal active site elasticity linked to activation of homocysteine in methionine synthases.
Proc.Natl.Acad.Sci.Usa, 105, 2008
1CTM
DownloadVisualize
BU of 1ctm by Molmil
CRYSTAL STRUCTURE OF CHLOROPLAST CYTOCHROME F REVEALS A NOVEL CYTOCHROME FOLD AND UNEXPECTED HEME LIGATION
Descriptor: CYTOCHROME F, HEME C
Authors:Martinez, S.E, Huang, D, Szczepaniak, A, Cramer, W.A, Smith, J.L.
Deposit date:1994-01-02
Release date:1994-05-31
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of chloroplast cytochrome f reveals a novel cytochrome fold and unexpected heme ligation.
Structure, 2, 1994
1JVN
DownloadVisualize
BU of 1jvn by Molmil
CRYSTAL STRUCTURE OF IMIDAZOLE GLYCEROL PHOSPHATE SYNTHASE: A TUNNEL THROUGH A (BETA/ALPHA)8 BARREL JOINS TWO ACTIVE SITES
Descriptor: BIFUNCTIONAL HISTIDINE BIOSYNTHESIS PROTEIN HISHF, NICKEL (II) ION, PYROPHOSPHATE 2-, ...
Authors:Chaudhuri, B.N, Smith, J.L, Davisson, V.J, Myers, R.S, Lange, S.C, Chittur, S.V.
Deposit date:2001-08-30
Release date:2001-10-12
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structure of imidazole glycerol phosphate synthase: a tunnel through a (beta/alpha)8 barrel joins two active sites.
Structure, 9, 2001
3F5H
DownloadVisualize
BU of 3f5h by Molmil
Crystal structure of fused docking domains from PikAIII and PikAIV of the pikromycin polyketide synthase
Descriptor: SODIUM ION, Type I polyketide synthase PikAIII, Type I polyketide synthase PikAIV fusion protein
Authors:Buchholz, T.J, Geders, T.W, Bartley, F.E, Reynolds, K.A, Smith, J.L, Sherman, D.H.
Deposit date:2008-11-03
Release date:2009-01-27
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Structural basis for binding specificity between subclasses of modular polyketide synthase docking domains.
Acs Chem.Biol., 4, 2009
6B3A
DownloadVisualize
BU of 6b3a by Molmil
AprA Methyltransferase 1 - GNAT didomain in complex with Mn2+ and SAM
Descriptor: AprA Methyltransferase 1, GLYCEROL, MANGANESE (II) ION, ...
Authors:Skiba, M.A, Smith, J.L.
Deposit date:2017-09-21
Release date:2017-11-15
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.784 Å)
Cite:A Mononuclear Iron-Dependent Methyltransferase Catalyzes Initial Steps in Assembly of the Apratoxin A Polyketide Starter Unit.
ACS Chem. Biol., 12, 2017
5THY
DownloadVisualize
BU of 5thy by Molmil
Crystal structure of SeMet-Substituted CurJ carbon methyltransferase
Descriptor: CurJ, OXIDIZED GLUTATHIONE DISULFIDE, S-ADENOSYL-L-HOMOCYSTEINE
Authors:Skiba, M.A, Smith, J.L.
Deposit date:2016-09-30
Release date:2016-10-19
Last modified:2019-12-04
Method:X-RAY DIFFRACTION (2.087 Å)
Cite:Domain Organization and Active Site Architecture of a Polyketide Synthase C-methyltransferase.
ACS Chem. Biol., 11, 2016
6B39
DownloadVisualize
BU of 6b39 by Molmil
AprA Methyltransferase 1 - GNAT in complex with SAH
Descriptor: AprA Methyltransferase 1, S-ADENOSYL-L-HOMOCYSTEINE, SULFATE ION
Authors:Skiba, M.A, Smith, J.L.
Deposit date:2017-09-21
Release date:2017-11-15
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.392 Å)
Cite:A Mononuclear Iron-Dependent Methyltransferase Catalyzes Initial Steps in Assembly of the Apratoxin A Polyketide Starter Unit.
ACS Chem. Biol., 12, 2017
6B3B
DownloadVisualize
BU of 6b3b by Molmil
AprA Methyltransferase 1 - GNAT in complex with Mn2+ , SAM, and Malonate
Descriptor: AprA Methyltransferase 1, GLYCEROL, MALONATE ION, ...
Authors:Skiba, M.A, Smith, J.L.
Deposit date:2017-09-21
Release date:2017-11-15
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:A Mononuclear Iron-Dependent Methyltransferase Catalyzes Initial Steps in Assembly of the Apratoxin A Polyketide Starter Unit.
ACS Chem. Biol., 12, 2017
5TZ7
DownloadVisualize
BU of 5tz7 by Molmil
Crystal Structure of CurK Dehydratase D1169N Inactive Mutant
Descriptor: CITRATE ANION, CurK
Authors:Dodge, G.J, Smith, J.L.
Deposit date:2016-11-21
Release date:2017-01-11
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.648 Å)
Cite:Vinylogous Dehydration by a Polyketide Dehydratase Domain in Curacin Biosynthesis.
J. Am. Chem. Soc., 138, 2016
5TZ6
DownloadVisualize
BU of 5tz6 by Molmil
Crystal Structure of CurJ Dehydratase H978F Inactive Mutant In Complex with Compound 21
Descriptor: (2E,5R)-5-hydroxy-2-methylhept-2-enoic acid, CurJ
Authors:Dodge, G.J, Smith, J.L.
Deposit date:2016-11-21
Release date:2017-01-11
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Vinylogous Dehydration by a Polyketide Dehydratase Domain in Curacin Biosynthesis.
J. Am. Chem. Soc., 138, 2016
5TZ5
DownloadVisualize
BU of 5tz5 by Molmil
Crystal Structure of CurK Dehydratase H996F Inactive Mutant
Descriptor: CurK
Authors:Dodge, G.J, Smith, J.L.
Deposit date:2016-11-21
Release date:2017-01-11
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.428 Å)
Cite:Vinylogous Dehydration by a Polyketide Dehydratase Domain in Curacin Biosynthesis.
J. Am. Chem. Soc., 138, 2016
1RHY
DownloadVisualize
BU of 1rhy by Molmil
Crystal structure of Imidazole Glycerol Phosphate Dehydratase
Descriptor: ACETIC ACID, ETHYL MERCURY ION, GLYCEROL, ...
Authors:Sinha, S.C, Chaudhuri, B.N, Burgner, J.W, Yakovleva, G, Davisson, V.J, Smith, J.L.
Deposit date:2003-11-14
Release date:2004-05-04
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of imidazole glycerol-phosphate dehydratase: duplication of an unusual fold
J.Biol.Chem., 279, 2004
6D5X
DownloadVisualize
BU of 6d5x by Molmil
Structure of Human ATP:Cobalamin Adenosyltransferase bound to ATP, Adenosylcobalamin, and Triphosphate
Descriptor: 5'-DEOXYADENOSINE, ADENOSINE-5'-TRIPHOSPHATE, COBALAMIN, ...
Authors:Dodge, G.J, Campanello, G, Smith, J.L, Banerjee, R.
Deposit date:2018-04-19
Release date:2018-10-10
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Sacrificial Cobalt-Carbon Bond Homolysis in Coenzyme B12as a Cofactor Conservation Strategy.
J. Am. Chem. Soc., 140, 2018
6D6Y
DownloadVisualize
BU of 6d6y by Molmil
AprA Methyltransferase 2 - GNAT didomain in complex with SAH
Descriptor: AprA Methyltransferase 2, S-ADENOSYL-L-HOMOCYSTEINE, trimethylamine oxide
Authors:Sikkema, A.P, Smith, J.L.
Deposit date:2018-04-23
Release date:2018-05-09
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.246 Å)
Cite:Biosynthesis of t-Butyl in Apratoxin A: Functional Analysis and Architecture of a PKS Loading Module.
ACS Chem. Biol., 13, 2018
5VE4
DownloadVisualize
BU of 5ve4 by Molmil
Crystal structure of persulfide dioxygenase-rhodanese fusion protein with rhodanese domain inactivating mutation (C314S) from Burkholderia phytofirmans
Descriptor: BpPRF, CHLORIDE ION, DI(HYDROXYETHYL)ETHER, ...
Authors:Motl, N, Skiba, M.A, Smith, J.L, Banerjee, R.
Deposit date:2017-04-03
Release date:2017-07-19
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:Structural and biochemical analyses indicate that a bacterial persulfide dioxygenase-rhodanese fusion protein functions in sulfur assimilation.
J. Biol. Chem., 292, 2017
5VE5
DownloadVisualize
BU of 5ve5 by Molmil
Crystal structure of persulfide dioxygenase rhodanese fusion protein with rhodanese domain inactivating mutation (C314S) from Burkholderia phytofirmans in complex with glutathione
Descriptor: BpPRF, CHLORIDE ION, FE (III) ION, ...
Authors:Motl, N, Skiba, M.A, Smith, J.L, Banerjee, R.
Deposit date:2017-04-03
Release date:2017-07-19
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Structural and biochemical analyses indicate that a bacterial persulfide dioxygenase-rhodanese fusion protein functions in sulfur assimilation.
J. Biol. Chem., 292, 2017
6D5K
DownloadVisualize
BU of 6d5k by Molmil
Structure of Human ATP:Cobalamin Adenosyltransferase bound to ATP, and Adenosylcobalamin
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, 5'-DEOXYADENOSINE, ADENOSINE-5'-TRIPHOSPHATE, ...
Authors:Dodge, G.J, Campanello, G, Smith, J.L, Banerjee, R.
Deposit date:2018-04-19
Release date:2018-10-10
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.85 Å)
Cite:Sacrificial Cobalt-Carbon Bond Homolysis in Coenzyme B12as a Cofactor Conservation Strategy.
J. Am. Chem. Soc., 140, 2018
5THZ
DownloadVisualize
BU of 5thz by Molmil
Crystal structure of CurJ carbon methyltransferase
Descriptor: CITRATE ANION, CurJ, GLYCEROL, ...
Authors:Skiba, M.A, Smith, J.L.
Deposit date:2016-09-30
Release date:2016-10-19
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Domain Organization and Active Site Architecture of a Polyketide Synthase C-methyltransferase.
ACS Chem. Biol., 11, 2016
1S48
DownloadVisualize
BU of 1s48 by Molmil
Crystal structure of RNA-dependent RNA polymerase construct 1 (residues 71-679) from BVDV
Descriptor: RNA-dependent RNA polymerase
Authors:Choi, K.H, Groarke, J.M, Young, D.C, Kuhn, R.J, Smith, J.L, Pevear, D.C, Rossmann, M.G.
Deposit date:2004-01-15
Release date:2004-04-06
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3 Å)
Cite:The structure of the RNA-dependent RNA polymerase from bovine viral diarrhea virus establishes the role of GTP in de novo initiation.
Proc.Natl.Acad.Sci.Usa, 101, 2004
1S4F
DownloadVisualize
BU of 1s4f by Molmil
Crystal Structure of RNA-dependent RNA polymerase construct 2 from bovine viral diarrhea virus (BVDV)
Descriptor: RNA-dependent RNA polymerase
Authors:Choi, K.H, Groarke, J.M, Young, D.C, Kuhn, R.J, Smith, J.L, Pevear, D.C, Rossmann, M.G.
Deposit date:2004-01-16
Release date:2004-04-06
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (3 Å)
Cite:The structure of the RNA-dependent RNA polymerase from bovine viral diarrhea virus establishes the role of GTP in de novo initiation.
Proc.Natl.Acad.Sci.Usa, 101, 2004
1S49
DownloadVisualize
BU of 1s49 by Molmil
Crystal Structure of RNA-dependent RNA polymerase construct 1 (residues 71-679) from bovine viral diarrhea virus complexed with GTP
Descriptor: GUANOSINE-5'-TRIPHOSPHATE, RNA-dependent RNA polymerase
Authors:Choi, K.H, Groarke, J.M, Young, D.C, Kuhn, R.J, Smith, J.L, Pevear, D.C, Rossmann, M.G.
Deposit date:2004-01-15
Release date:2004-04-06
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (3 Å)
Cite:The structure of the RNA-dependent RNA polymerase from bovine viral diarrhea virus establishes the role of GTP in de novo initiation.
Proc.Natl.Acad.Sci.Usa, 101, 2004
5W3V
DownloadVisualize
BU of 5w3v by Molmil
Crystal Structure of macaque APOBEC3H in complex with RNA
Descriptor: Apobec3H, RNA (5'-R(P*AP*AP*CP*CP*CP*CP*GP*GP*GP*C)-3'), RNA (5'-R(P*AP*AP*CP*CP*CP*GP*GP*GP*GP*A)-3'), ...
Authors:Bohn, J.A, Thummar, K, York, A, Raymond, A, Brown, W.C, Bieniasz, P.D, Hatziioannou, T, Smith, J.L.
Deposit date:2017-06-08
Release date:2017-10-25
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (2.243 Å)
Cite:APOBEC3H structure reveals an unusual mechanism of interaction with duplex RNA.
Nat Commun, 8, 2017
5VE3
DownloadVisualize
BU of 5ve3 by Molmil
Crystal structure of wild-type persulfide dioxygenase-rhodanese fusion protein from Burkholderia phytofirmans
Descriptor: BpPRF, FE (III) ION
Authors:Motl, N, Skiba, M.A, Smith, J.L, Banerjee, R.
Deposit date:2017-04-03
Release date:2017-07-19
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (1.793 Å)
Cite:Structural and biochemical analyses indicate that a bacterial persulfide dioxygenase-rhodanese fusion protein functions in sulfur assimilation.
J. Biol. Chem., 292, 2017
5W7P
DownloadVisualize
BU of 5w7p by Molmil
Crystal structure of OxaC
Descriptor: OxaC, S-ADENOSYLMETHIONINE
Authors:Newmister, S.A, Romminger, S, Schmidt, J.J, Williams, R.M, Smith, J.L, Berlinck, R.G.S, Sherman, D.H.
Deposit date:2017-06-20
Release date:2018-06-27
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Unveiling sequential late-stage methyltransferase reactions in the meleagrin/oxaline biosynthetic pathway.
Org. Biomol. Chem., 16, 2018

226707

PDB entries from 2024-10-30

PDB statisticsPDBj update infoContact PDBjnumon