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PDB: 165 results

2ZQU
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BU of 2zqu by Molmil
Crystal structure of a mutant PIN1 PEPTIDYL-PROLYL CIS-TRANS ISOMERASE
Descriptor: Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1, SULFATE ION
Authors:Jobichen, C, Liou, Y.C, Sivaraman, J.
Deposit date:2008-08-19
Release date:2009-08-25
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural studies on PIN1 mutants
To be Published
2ZR4
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BU of 2zr4 by Molmil
Crystal structure of a mutant PIN1 peptidyl-prolyl cis-trans isomerase
Descriptor: 2-(2-{2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHANOL, Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1, SULFATE ION
Authors:Jobichen, C, Yih-Cherng, L, Sivaraman, J.
Deposit date:2008-08-22
Release date:2009-08-25
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural studies on PIN1 mutants
To be Published
2ZR5
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BU of 2zr5 by Molmil
Crystal structure of a mutant PIN1 peptidyl-prolyl cis-trans isomerase
Descriptor: 2-(2-{2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHANOL, Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1, SULFATE ION
Authors:Jobichen, C, Yih-Cherng, L, Sivaraman, J.
Deposit date:2008-08-22
Release date:2009-08-25
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structural studies on PIN1 mutants
To be Published
6K3O
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BU of 6k3o by Molmil
Cryo-EM structure of Apo-bacterioferritin from Streptomyces coelicolor
Descriptor: Bacterioferritin, FE (II) ION, PROTOPORPHYRIN IX CONTAINING FE
Authors:Jobichen, C, Sivaraman, J.
Deposit date:2019-05-21
Release date:2021-02-03
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Cryo-EM structure of Apo-bacterioferritin from Streptomyces coelicolor.
To Be Published
6K43
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BU of 6k43 by Molmil
Cryo-EM structure of Holo-bacterioferritin-form-I from Streptomyces coelicolor
Descriptor: Bacterioferritin, FE (II) ION, PROTOPORPHYRIN IX CONTAINING FE
Authors:Jobichen, C, Sivaraman, J.
Deposit date:2019-05-23
Release date:2021-02-03
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:Cryo-EM structure of Apo-bacterioferritin from Streptomyces coelicolor.
To Be Published
2ZQS
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BU of 2zqs by Molmil
Crystal structure of a mutant PIN1 PEPTIDYL-PROLYL CIS-TRANS ISOMERASE
Descriptor: 2-(2-{2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHANOL, Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1, SULFATE ION
Authors:Jobichen, C, Liou, Y.C, Sivaraman, J.
Deposit date:2008-08-19
Release date:2009-08-25
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.902 Å)
Cite:Structural studies on PIN1 mutants
To be Published
6K4M
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BU of 6k4m by Molmil
Cryo-EM structure of Holo-bacterioferritin form-II from Streptomyces coelicolor
Descriptor: Bacterioferritin, FE (II) ION, PROTOPORPHYRIN IX CONTAINING FE
Authors:Jobichen, C, Sivaraman, J.
Deposit date:2019-05-24
Release date:2021-02-03
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (4.5 Å)
Cite:Cryo-EM structure of Bacterioferritin from Streptomyces coelicolor
To Be Published
2ZR6
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BU of 2zr6 by Molmil
Crystal structure of a mutant PIN1 peptidyl-prolyl cis-trans isomerase
Descriptor: 2-(2-{2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHANOL, Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1, SULFATE ION
Authors:Jobichen, C, Yih-Cherng, L, Sivaraman, J.
Deposit date:2008-08-22
Release date:2009-08-25
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Structural studies on PIN1 mutants
To be Published
3ELP
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BU of 3elp by Molmil
Structure of cystationine gamma lyase
Descriptor: Cystathionine gamma-lyase
Authors:Sun, Q, Sivaraman, J.
Deposit date:2008-09-23
Release date:2008-11-18
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structural basis for the inhibition mechanism of human cystathionine gamma-lyase, an enzyme responsible for the production of H(2)S
J.Biol.Chem., 284, 2009
2ZQT
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BU of 2zqt by Molmil
Crystal structure of a mutant PIN1 PEPTIDYL-PROLYL CIS-TRANS ISOMERASE
Descriptor: 2-(2-{2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHANOL, Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1, SULFATE ION
Authors:Jobichen, C, Liou, Y.C, Sivaraman, J.
Deposit date:2008-08-19
Release date:2009-08-25
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.462 Å)
Cite:Structural studies on PIN1 mutants
To be Published
3EBW
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BU of 3ebw by Molmil
Crystal structure of major allergens, Per a 4 from cockroaches
Descriptor: 2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL, Per a 4 allergen
Authors:Tan, Y.W, Chan, S.L, Chew, F.T, Sivaraman, J, Mok, Y.K.
Deposit date:2008-08-28
Release date:2008-12-02
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structures of two major allergens, Bla g 4 and Per a 4, from cockroaches and their IgE binding epitopes.
J.Biol.Chem., 284, 2008
2MQ1
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BU of 2mq1 by Molmil
Phosphotyrosine binding domain
Descriptor: E3 ubiquitin-protein ligase Hakai, ZINC ION
Authors:Mukherjee, M, Jing-Song, F, Sivaraman, J.
Deposit date:2014-06-11
Release date:2014-08-06
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Dimeric switch of Hakai-truncated monomers during substrate recognition: insights from solution studies and NMR structure.
J.Biol.Chem., 289, 2014
2OVS
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BU of 2ovs by Molmil
Crystal structure of a Type Three secretion System protein
Descriptor: L0044, TETRAETHYLENE GLYCOL
Authors:Jobichen, C, Li, M, Sivaraman, J.
Deposit date:2007-02-15
Release date:2007-05-29
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structure of GrlR and the implication of its EDED motif in mediating the regulation of type III secretion system in EHEC.
Plos Pathog., 3, 2007
1K75
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BU of 1k75 by Molmil
The L-histidinol dehydrogenase (hisD) structure implicates domain swapping and gene duplication.
Descriptor: GLYCEROL, L-histidinol dehydrogenase, SULFATE ION
Authors:Barbosa, J.A.R.G, Sivaraman, J, Li, Y, Larocque, R, Matte, A, Schrag, J, Cygler, M, Montreal-Kingston Bacterial Structural Genomics Initiative (BSGI)
Deposit date:2001-10-18
Release date:2002-02-27
Last modified:2014-11-12
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Mechanism of action and NAD+-binding mode revealed by the crystal structure of L-histidinol dehydrogenase.
Proc.Natl.Acad.Sci.USA, 99, 2002
1MHW
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BU of 1mhw by Molmil
Design of non-covalent inhibitors of human cathepsin L. From the 96-residue proregion to optimized tripeptides
Descriptor: 4-biphenylacetyl-Cys-(D)Arg-Tyr-N-(2-phenylethyl) amide, Cathepsin L
Authors:Chowdhury, S, Sivaraman, J, Wang, J, Devanathan, G, Lachance, P, Qi, H, Menard, R, Lefebvre, J, Konishi, Y, Cygler, M, Sulea, T, Purisima, E.O.
Deposit date:2002-08-21
Release date:2002-12-11
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Design of non-covalent inhibitors of human cathepsin L. From the 96-residue proregion to optimized tripeptides
J.Med.Chem., 45, 2002
4O7D
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BU of 4o7d by Molmil
Crystal structure of human glutaminase in complex DON
Descriptor: 5-OXO-L-NORLEUCINE, Glutaminase kidney isoform, mitochondrial
Authors:Thangavelu, K, Sivaraman, J.
Deposit date:2013-12-24
Release date:2014-04-16
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural basis for the active site inhibition mechanism of human kidney-type glutaminase (KGA)
Sci Rep, 4, 2014
1CJL
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BU of 1cjl by Molmil
CRYSTAL STRUCTURE OF A CYSTEINE PROTEASE PROFORM
Descriptor: PROCATHEPSIN L
Authors:Coulombe, R, Grochulski, P, Sivaraman, J, Cygler, M.
Deposit date:1996-07-24
Release date:1997-08-12
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structure of human procathepsin L reveals the molecular basis of inhibition by the prosegment.
EMBO J., 15, 1996
4N7D
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BU of 4n7d by Molmil
Selenomethionine incorporated Bla g 4
Descriptor: Bla g 4 allergen variant 1, CITRIC ACID, GLYCEROL
Authors:Offermann, L.R, Chan, S.L, Osinski, T, Tan, Y.W, Chew, F.T, Sivaraman, J, Mok, Y.K, Minor, W, Chruszcz, M.
Deposit date:2013-10-15
Release date:2014-05-21
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:The major cockroach allergen Bla g 4 binds tyramine and octopamine.
Mol.Immunol., 60, 2014
1PVJ
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BU of 1pvj by Molmil
Crystal structure of the Streptococcal pyrogenic exotoxin B (SpeB)- inhibitor complex
Descriptor: (3R)-3-{[(BENZYLOXY)CARBONYL]AMINO}-2-OXO-4-PHENYLBUTANE-1-DIAZONIUM, pyrogenic exotoxin B
Authors:Ziomek, E, Sivaraman, J, Doran, J, Menard, R, Cygler, M.
Deposit date:2003-06-27
Release date:2004-09-28
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (3 Å)
Cite:Inhibition of autoprocessing of the streptococcal pyrogenic exotoxin B (speB). Crystal structure of the proenzyme-inhibitor complex
To be published
5XWE
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BU of 5xwe by Molmil
Structure of a three finger toxin from Ophiophagus hannah venom
Descriptor: CHLORIDE ION, GLYCEROL, Weak toxin DE-1 homolog 1, ...
Authors:Jobichen, C, Roy, A, Kini, R.M, Sivaraman, J.
Deposit date:2017-06-29
Release date:2018-07-11
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structure of a three finger toxin from Ophiophagus hannah venom
To Be Published
5YDX
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BU of 5ydx by Molmil
NMR structure of YAP1-2 WW1 domain with LATS1 PPxY motif complex
Descriptor: WW domain with PPxY motif
Authors:Fan, J.S, Sivaraman, J.
Deposit date:2017-09-15
Release date:2018-05-02
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Biophysical studies and NMR structure of YAP2 WW domain - LATS1 PPxY motif complexes reveal the basis of their interaction.
Oncotarget, 9, 2018
5YDY
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BU of 5ydy by Molmil
NMR structure of YAP1-2 WW2 domain with LATS1 PPxY motif complex
Descriptor: WW2 domain and PPxY motif complex
Authors:Fan, J.S, Sivaraman, J.
Deposit date:2017-09-15
Release date:2018-05-02
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Biophysical studies and NMR structure of YAP2 WW domain - LATS1 PPxY motif complexes reveal the basis of their interaction.
Oncotarget, 9, 2018
7EDD
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BU of 7edd by Molmil
Crystal structure of a serine protease from Streptococcus pyogenes
Descriptor: C5a peptidase, CALCIUM ION, CHLORIDE ION, ...
Authors:Jobichen, C, Sivaraman, J.
Deposit date:2021-03-15
Release date:2021-05-12
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.897 Å)
Cite:The Autocatalytic Cleavage Domain Is Not Required for the Activity of ScpC, a Virulence Protease from Streptococcus pyogenes : A Structural Insight.
Biochemistry, 60, 2021
7E0W
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BU of 7e0w by Molmil
Crystal Structure of BCH domain from S. pombe
Descriptor: Putative Rho GTPase-activating protein C1565.02c, TETRAETHYLENE GLYCOL
Authors:Chichili, V.P.R, Jobichen, C, Sivaraman, J.
Deposit date:2021-01-28
Release date:2021-03-31
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:A novel intertwined anti-parallel dimeric structure of scaffold BCH domain regulates RhoA and RhoGAP functions
Proc.Natl.Acad.Sci.USA, 2021
7FCF
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BU of 7fcf by Molmil
Crystal structure of T6SS Hcp protein
Descriptor: Fimbrial protein
Authors:Jobichen, C, Sivaraman, J.
Deposit date:2021-07-14
Release date:2022-07-20
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Bacterial antagonism of Chromobacterium haemolyticum and characterization of its putative type VI secretion system.
Res.Microbiol., 173, 2022

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