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PDB: 137 件

1U9S
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Crystal structure of the specificity domain of Ribonuclease P of the A-type
分子名称: BARIUM ION, RIBONUCLEASE P
著者Krasilnikov, A.S, Xiao, Y, Pan, T, Mondragon, A.
登録日2004-08-10
公開日2004-10-26
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献Basis for structural diversity in homologous RNAs.
Science, 306, 2004
8GCG
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MDM2 bound to inhibitor
分子名称: E3 ubiquitin-protein ligase Mdm2, macrocyclic peptide inhibitor
著者Silvestri, A.P, Muir, E.W, Chakka, S.K, Tripathi, S.M, Rubin, S.M, Pye, C.R, Schwochert, J.A.
登録日2023-03-01
公開日2024-10-23
実験手法X-RAY DIFFRACTION (1.47 Å)
主引用文献DNA-Encoded Macrocyclic Peptide Libraries Enable the Discovery of a Neutral MDM2-p53 Inhibitor.
Acs Med.Chem.Lett., 14, 2023
7O3D
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Cooperation between the intrinsically disordered and ordered regions of Spt6 regulates nucleosome and Pol II CTD binding, and nucleosome assembly
分子名称: Transcription elongation factor SPT6
著者Kasiliauskaite, A, Kubicek, K, Klumpler, T, Zanova, M, Zapletal, D, Novacek, J, Stefl, R.
登録日2021-04-01
公開日2022-04-13
最終更新日2022-06-15
実験手法ELECTRON MICROSCOPY (3.71 Å)
主引用文献Cooperation between intrinsically disordered and ordered regions of Spt6 regulates nucleosome and Pol II CTD binding, and nucleosome assembly.
Nucleic Acids Res., 50, 2022
7O6B
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Cooperation between the intrinsically disordered and ordered regions of Spt6 regulates nucleosome and Pol II CTD binding, and nucleosome assembly
分子名称: Transcription elongation factor SPT6
著者Kasiliauskaite, A, Kubicek, K, Klumpler, T, Zanova, M, Zapletal, D, Novacek, J, Stefl, R.
登録日2021-04-09
公開日2022-04-20
最終更新日2024-10-23
実験手法ELECTRON MICROSCOPY (3.88 Å)
主引用文献Cooperation between intrinsically disordered and ordered regions of Spt6 regulates nucleosome and Pol II CTD binding, and nucleosome assembly.
Nucleic Acids Res., 50, 2022
8BYM
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BU of 8bym by Molmil
Outer membrane attachment porin OmpM1 from Veillonella parvula
分子名称: S-layer homology domain-containing protein
著者Silale, A, van den Berg, B.
登録日2022-12-13
公開日2023-11-08
最終更新日2023-12-27
実験手法ELECTRON MICROSCOPY (3.15 Å)
主引用文献Dual function of OmpM as outer membrane tether and nutrient uptake channel in diderm Firmicutes.
Nat Commun, 14, 2023
8BYS
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Outer membrane attachment porin OmpM1 from Veillonella parvula, native
分子名称: S-layer homology domain-containing protein
著者Silale, A, van den Berg, B.
登録日2022-12-13
公開日2023-11-08
最終更新日2023-12-27
実験手法ELECTRON MICROSCOPY (3.28 Å)
主引用文献Dual function of OmpM as outer membrane tether and nutrient uptake channel in diderm Firmicutes.
Nat Commun, 14, 2023
7P8G
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Crystal structure of Mycobacterium hassiacum glucosyl-3-phosphoglycerate synthase at pH 5.5 - apo form
分子名称: CHLORIDE ION, Glucosyl-3-phosphoglycerate synthase, MALONATE ION, ...
著者Silva, A, Nunes-Costa, D, Barbosa Pereira, P.J, Macedo-Ribeiro, S.
登録日2021-07-21
公開日2023-01-25
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (2.13 Å)
主引用文献Crystal structure of Mycobacterium hassiacum glucosyl-3-phosphoglycerate synthase at pH 5.5 - apo form
To Be Published
7P5L
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Crystal structure of Mycobacterium hassiacum glucosyl-3-phosphoglycerate synthase at pH 7.1 - apo form
分子名称: (2S)-2-hydroxybutanedioic acid, D-MALATE, Glucosyl-3-phosphoglycerate synthase
著者Silva, A, Nunes-Costa, D, Barbosa Pereira, P.J, Macedo-Ribeiro, S.
登録日2021-07-14
公開日2023-01-18
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (1.22 Å)
主引用文献Crystal structure of Mycobacterium hassiacum glucosyl-3-phosphoglycerate synthase at pH 7.1 - apo form
To Be Published
8BZ2
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Crystal structure of outer membrane attachment porin OmpM1 SLH domain
分子名称: S-layer homology domain-containing protein, SULFATE ION
著者Silale, A, van den Berg, B.
登録日2022-12-14
公開日2023-11-08
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Dual function of OmpM as outer membrane tether and nutrient uptake channel in diderm Firmicutes.
Nat Commun, 14, 2023
8BYT
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Outer membrane attachment porin OmpM1 from Veillonella parvula, C3 symmetry
分子名称: S-layer homology domain-containing protein
著者Silale, A, van den Berg, B.
登録日2022-12-13
公開日2023-11-08
最終更新日2023-12-27
実験手法ELECTRON MICROSCOPY (2.78 Å)
主引用文献Dual function of OmpM as outer membrane tether and nutrient uptake channel in diderm Firmicutes.
Nat Commun, 14, 2023
7PDO
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Crystal structure of Mycobacterium hassiacum glucosyl-3-phosphoglycerate synthase at pH 5.5 in complex with UDP
分子名称: CHLORIDE ION, Glucosyl-3-phosphoglycerate synthase, URIDINE-5'-DIPHOSPHATE
著者Silva, A, Nunes-Costa, D, Barbosa Pereira, P.J, Macedo-Ribeiro, S.
登録日2021-08-05
公開日2023-02-15
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (1.97 Å)
主引用文献Crystal structure of Mycobacterium hassiacum glucosyl-3-phosphoglycerate synthase at pH 5.5 in complex with UDP
To Be Published
7PVL
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Crystal structure of Mycobacterium hassiacum glucosyl-3-phosphoglycerate synthase at pH 8.5 - apo form
分子名称: CHLORIDE ION, Glucosyl-3-phosphoglycerate synthase, MAGNESIUM ION
著者Silva, A, Nunes-Costa, D, Barbosa Pereira, P.J, Macedo-Ribeiro, S.
登録日2021-10-04
公開日2023-04-19
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (1.43 Å)
主引用文献Crystal structure of Mycobacterium hassiacum glucosyl-3-phosphoglycerate synthase at pH 8.5 - apo form
To Be Published
7QCP
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Crystal structure of Mycobacterium hassiacum glucosyl-3-phosphoglycerate synthase at pH 7.2 - apo form
分子名称: Glucosyl-3-phosphoglycerate synthase, L(+)-TARTARIC ACID
著者Silva, A, Nunes-Costa, D, Barbosa Pereira, P.J, Macedo-Ribeiro, S.
登録日2021-11-25
公開日2022-12-14
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (1.11 Å)
主引用文献Crystal structure of Mycobacterium hassiacum glucosyl-3-phosphoglycerate synthase at pH 7.2 - apo form
To Be Published
7QI9
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Crystal structure of Mycobacterium hassiacum glucosyl-3-phosphoglycerate synthase at pH 7.2 in complex with UDP
分子名称: Glucosyl-3-phosphoglycerate synthase, URIDINE-5'-DIPHOSPHATE
著者Silva, A, Nunes-Costa, D, Barbosa Pereira, P.J, Macedo-Ribeiro, S.
登録日2021-12-14
公開日2022-12-28
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (1.23 Å)
主引用文献Crystal structure of Mycobacterium hassiacum glucosyl-3-phosphoglycerate synthase at pH 7.2 in complex with UDP
To Be Published
1DIF
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BU of 1dif by Molmil
HIV-1 PROTEASE IN COMPLEX WITH A DIFLUOROKETONE CONTAINING INHIBITOR A79285
分子名称: BETA-MERCAPTOETHANOL, HIV-1 PROTEASE, N-{1-BENZYL-2,2-DIFLUORO-3,3-DIHYDROXY-4-[3-METHYL-2-(3-METHYL-3-PYRIDIN-2-YLMETHYL-UREIDO)-BUTYRYLAMINO]-5-PHENYL-PENTYL}-3-METHYL-2-(3-METHYL-3-PYRIDIN-2-YLMETHYL-UREIDO)-BUTYRAMIDE
著者Silva, A.M, Cachau, R.E, Sham, H.L, Erickson, J.W.
登録日1995-10-09
公開日1996-03-08
最終更新日2024-06-05
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Inhibition and catalytic mechanism of HIV-1 aspartic protease.
J.Mol.Biol., 255, 1996
5M2E
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BU of 5m2e by Molmil
Apo structure of Pseudomonas aeruginosa Isocitrate Dehydrogenase, ICD.
分子名称: Isocitrate dehydrogenase [NADP]
著者Crousilles, A, Welch, M.
登録日2016-10-12
公開日2017-12-20
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Gluconeogenic precursor availability regulates flux through the glyoxylate shunt inPseudomonas aeruginosa.
J. Biol. Chem., 293, 2018
7PD5
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BU of 7pd5 by Molmil
Crystal structure of Mycobacterium hassiacum glucosyl-3-phosphoglycerate synthase at pH 5.5 in complex with 4-aminobenzoic acid
分子名称: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 4-AMINOBENZOIC ACID, CHLORIDE ION, ...
著者Silva, A, Nunes-Costa, D, Barbosa Pereira, P.J, Macedo-Ribeiro, S.
登録日2021-08-04
公開日2023-02-15
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (1.95 Å)
主引用文献Crystal structure of Mycobacterium hassiacum glucosyl-3-phosphoglycerate synthase at pH 5.5 in complex with 4-aminobenzoic acid
To Be Published
7PE4
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Crystal structure of Mycobacterium hassiacum glucosyl-3-phosphoglycerate synthase at pH 5.5 in complex with UDP-glucose
分子名称: BICARBONATE ION, CHLORIDE ION, Glucosyl-3-phosphoglycerate synthase, ...
著者Silva, A, Barbosa Pereira, P.J, Macedo-Ribeiro, S.
登録日2021-08-09
公開日2023-02-22
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (2.05 Å)
主引用文献Crystal structure of Mycobacterium hassiacum glucosyl-3-phosphoglycerate synthase at pH 5.5 in complex with UDP-glucose
To Be Published
4FE6
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Crystal Structure of HIV-1 Protease in Complex with an enamino-oxindole inhibitor
分子名称: (3R,3aS,6aR)-hexahydrofuro[2,3-b]furan-3-yl {(2S,3R)-3-hydroxy-4-[({(3Z)-3-[1-(methylamino)ethylidene]-2-oxo-2,3-dihydro-1H-indol-5-yl}sulfonyl)(2-methylpropyl)amino]-1-phenylbutan-2-yl}carbamate, HIV protease
著者Silva, A.M, Eissenstat, M, Guerassina, T, Gulnik, S, Afonina, E, Yu, B, Erickson, J, Ludke, D, Yokoe, H.
登録日2012-05-29
公開日2012-07-18
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Enamino-oxindole HIV protease inhibitors.
Bioorg.Med.Chem.Lett., 22, 2012
7QIB
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BU of 7qib by Molmil
Crystal structure of Mycobacterium hassiacum glucosyl-3-phosphoglycerate synthase at pH 8.5 in complex with UDP
分子名称: CHLORIDE ION, Glucosyl-3-phosphoglycerate synthase, MAGNESIUM ION, ...
著者Silva, A, Nunes-Costa, D, Barbosa Pereira, P.J, Macedo-Ribeiro, S.
登録日2021-12-14
公開日2022-12-28
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Crystal structure of Mycobacterium hassiacum glucosyl-3-phosphoglycerate synthase at pH 8.5 in complex with UDP
To Be Published
7QOQ
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Crystal structure of Mycobacterium hassiacum glucosyl-3-phosphoglycerate synthase at pH 8.5 in complex with UMP and Magnesium
分子名称: CHLORIDE ION, Glucosyl-3-phosphoglycerate synthase, MAGNESIUM ION, ...
著者Silva, A, Barbosa Pereira, P.J, Macedo-Ribeiro, S, Costa, D.
登録日2021-12-27
公開日2023-01-18
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (1.93 Å)
主引用文献Crystal structure of Mycobacterium hassiacum glucosyl-3-phosphoglycerate synthase at pH 8.5 in complex with UMP and Magnesium
To Be Published
8BLW
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Vitamin B12 transporter BtuB1 with lipoprotein BtuG1 from B. theta
分子名称: Vitamin B12 transporter BtuB1, YncE family protein, beta-D-galactopyranose
著者Silale, A, Abellon-Ruiz, J, van den Berg, B.
登録日2022-11-10
公開日2023-08-16
実験手法ELECTRON MICROSCOPY (3.22 Å)
主引用文献BtuB TonB-dependent transporters and BtuG surface lipoproteins form stable complexes for vitamin B 12 uptake in gut Bacteroides.
Nat Commun, 14, 2023
8A8C
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T5 phage receptor-binding protein pb5 bound to ferrichrome transporter FhuA
分子名称: Ferrichrome outer membrane transporter/phage receptor, Receptor-binding protein pb5, [(2R,3S,4R,5R,6R)-2-[[(2R,4R,5R,6R)-6-[(1R)-1,2-bis(oxidanyl)ethyl]-4-[(2R,4R,5R,6R)-6-[(1R)-1,2-bis(oxidanyl)ethyl]-2-carboxy-4,5-bis(oxidanyl)oxan-2-yl]oxy-2-carboxy-5-oxidanyl-oxan-2-yl]oxymethyl]-5-[[(3R)-3-dodecanoyloxytetradecanoyl]amino]-4-(3-nonanoyloxypropanoyloxy)-6-[[(2R,3S,4R,5R,6R)-3-oxidanyl-4-[(3S)-3-oxidanyltetradecanoyl]oxy-5-[[(3R)-3-oxidanyltridecanoyl]amino]-6-phosphonatooxy-oxan-2-yl]methoxy]oxan-3-yl] phosphate
著者Silale, A, van den Berg, B.
登録日2022-06-22
公開日2022-10-05
最終更新日2022-11-16
実験手法ELECTRON MICROSCOPY (3.1 Å)
主引用文献Structural basis for host recognition and superinfection exclusion by bacteriophage T5.
Proc.Natl.Acad.Sci.USA, 119, 2022
8P97
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BtuB3G3 bound to cyanocobalamin with disordered EL8
分子名称: CYANOCOBALAMIN, Putative surface layer protein, TonB-dependent receptor
著者Silale, A, Abellon-Ruiz, J, van den Berg, B.
登録日2023-06-05
公開日2023-08-16
最終更新日2023-09-20
実験手法ELECTRON MICROSCOPY (2.75 Å)
主引用文献BtuB TonB-dependent transporters and BtuG surface lipoproteins form stable complexes for vitamin B 12 uptake in gut Bacteroides.
Nat Commun, 14, 2023
8P98
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BtuB3G3 bound to cyanocobalamin with ordered EL8
分子名称: CYANOCOBALAMIN, Putative surface layer protein, Vitamin B12 transporter BtuB
著者Silale, A, Abellon-Ruiz, J, van den Berg, B.
登録日2023-06-05
公開日2023-08-16
最終更新日2023-09-20
実験手法ELECTRON MICROSCOPY (2.97 Å)
主引用文献BtuB TonB-dependent transporters and BtuG surface lipoproteins form stable complexes for vitamin B 12 uptake in gut Bacteroides.
Nat Commun, 14, 2023

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件を2024-11-06に公開中

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