Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 311 件

1MBG
DownloadVisualize
BU of 1mbg by Molmil
MOUSE C-MYB DNA-BINDING DOMAIN REPEAT 2
分子名称: MYB PROTO-ONCOGENE PROTEIN
著者Ogata, K, Morikawa, S, Nakamura, H, Hojo, H, Yoshimura, S, Zhang, R, Aimoto, S, Ametani, Y, Hirata, Z, Sarai, A, Ishii, S, Nishimura, Y.
登録日1995-05-19
公開日1995-07-31
最終更新日2024-06-05
実験手法SOLUTION NMR
主引用文献Comparison of the free and DNA-complexed forms of the DNA-binding domain from c-Myb.
Nat.Struct.Biol., 2, 1995
1MBK
DownloadVisualize
BU of 1mbk by Molmil
MOUSE C-MYB DNA-BINDING DOMAIN REPEAT 3
分子名称: MYB PROTO-ONCOGENE PROTEIN
著者Ogata, K, Morikawa, S, Nakamura, H, Hojo, H, Yoshimura, S, Zhang, R, Aimoto, S, Ametani, Y, Hirata, Z, Sarai, A, Ishii, S, Nishimura, Y.
登録日1995-05-19
公開日1995-07-31
最終更新日2024-06-05
実験手法SOLUTION NMR
主引用文献Comparison of the free and DNA-complexed forms of the DNA-binding domain from c-Myb.
Nat.Struct.Biol., 2, 1995
4WY3
DownloadVisualize
BU of 4wy3 by Molmil
Structure of SARS-3CL protease complex with a phenylbenzoyl (R,S)-N-decalin type inhibitor
分子名称: (2S)-2-({[(3R,4aS,8aR)-2-(biphenyl-4-ylcarbonyl)decahydroisoquinolin-3-yl]methyl}amino)-3-(1H-imidazol-5-yl)propanal, 3C-like proteinase
著者Akaji, K, Teruya, K, Shimamoto, Y, Sanjho, A, Yamashita, E, Nakagawa, A.
登録日2014-11-15
公開日2015-02-18
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.89 Å)
主引用文献Fused-ring structure of decahydroisoquinolin as a novel scaffold for SARS 3CL protease inhibitors.
Bioorg.Med.Chem., 23, 2015
8I53
DownloadVisualize
BU of 8i53 by Molmil
Solution structure of the PH domain from the Tfb1 subunit of fission yeast TFIIH
分子名称: General transcription and DNA repair factor IIH subunit tfb1
著者Okuda, M, Nishimura, Y.
登録日2023-01-23
公開日2023-11-01
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Structural polymorphism of the PH domain in TFIIH.
Biosci.Rep., 43, 2023
7W9Q
DownloadVisualize
BU of 7w9q by Molmil
Crystal structure of V30M-TTR in complex with naringenin derivative-14
分子名称: (2~{R})-2-(3-chloranyl-4-oxidanyl-phenyl)-5,7-bis(oxidanyl)-2,3-dihydrochromen-4-one, CALCIUM ION, Transthyretin
著者Katayama, W, Shimane, A, Nabeshima, Y, Yokoyama, T, Mizuguchi, M.
登録日2021-12-10
公開日2022-12-14
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.599 Å)
主引用文献Chlorinated Naringenin Analogues as Potential Inhibitors of Transthyretin Amyloidogenesis.
J.Med.Chem., 65, 2022
7W9R
DownloadVisualize
BU of 7w9r by Molmil
Crystal structure of V30M-TTR in complex with naringenin derivative-18
分子名称: (2~{R})-2-[3,5-bis(chloranyl)-4-oxidanyl-phenyl]-5,7-bis(oxidanyl)-2,3-dihydrochromen-4-one, Transthyretin
著者Katayama, W, Shimane, A, Nabeshima, Y, Yokoyama, T, Mizuguchi, M.
登録日2021-12-10
公開日2022-12-14
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.997 Å)
主引用文献Chlorinated Naringenin Analogues as Potential Inhibitors of Transthyretin Amyloidogenesis.
J.Med.Chem., 65, 2022
1MBF
DownloadVisualize
BU of 1mbf by Molmil
MOUSE C-MYB DNA-BINDING DOMAIN REPEAT 1
分子名称: MYB PROTO-ONCOGENE PROTEIN
著者Ogata, K, Morikawa, S, Nakamura, H, Hojo, H, Yoshimura, S, Zhang, R, Aimoto, S, Ametani, Y, Hirata, Z, Sarai, A, Ishii, S, Nishimura, Y.
登録日1995-05-19
公開日1995-07-31
最終更新日2024-10-16
実験手法SOLUTION NMR
主引用文献Comparison of the free and DNA-complexed forms of the DNA-binding domain from c-Myb.
Nat.Struct.Biol., 2, 1995
2CZY
DownloadVisualize
BU of 2czy by Molmil
Solution structure of the NRSF/REST-mSin3B PAH1 complex
分子名称: Paired amphipathic helix protein Sin3b, transcription factor REST (version 3)
著者Nomura, M, Uda-Tochio, H, Murai, K, Mori, N, Nishimura, Y.
登録日2005-07-20
公開日2005-12-20
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献The Neural Repressor NRSF/REST Binds the PAH1 Domain of the Sin3 Corepressor by Using its Distinct Short Hydrophobic Helix
J.Mol.Biol., 354, 2005
5H0Q
DownloadVisualize
BU of 5h0q by Molmil
Crystal structure of lipid binding protein Nakanori at 1.5A
分子名称: Lipid binding protein
著者Makino, A, Abe, M, Ishitsuka, R, Murate, M, Kishimoto, T, Sakai, S, Hullin-Matsuda, F, Shimada, Y, Inaba, T, Miyatake, H, Tanaka, H, Kurahashi, A, Pack, C.G, Kasai, R.S, Kubo, S, Schieber, N.L, Dohmae, N, Tochio, N, Hagiwara, K, Sasaki, Y, Aida, Y, Fujimori, F, Kigawa, T, Nishikori, K, Parton, R.G, Kusumi, A, Sako, Y, Anderluh, G, Yamashita, M, Kobayashi, T, Greimel, P, Kobayashi, T.
登録日2016-10-06
公開日2016-10-19
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (1.501 Å)
主引用文献A novel sphingomyelin/cholesterol domain-specific probe reveals the dynamics of the membrane domains during virus release and in Niemann-Pick type C
FASEB J., 31, 2017
1EWV
DownloadVisualize
BU of 1ewv by Molmil
CRYSTAL STRUCTURE OF METABOTROPIC GLUTAMATE RECEPTOR SUBTYPE 1 LIGAND FREE FORM II
分子名称: METABOTROPIC GLUTAMATE RECEPTOR SUBTYPE 1
著者Kunishima, N, Shimada, Y, Tsuji, Y, Jingami, H, Morikawa, K.
登録日2000-04-27
公開日2000-12-18
最終更新日2023-08-09
実験手法X-RAY DIFFRACTION (4 Å)
主引用文献Structural basis of glutamate recognition by a dimeric metabotropic glutamate receptor.
Nature, 407, 2000
5GOW
DownloadVisualize
BU of 5gow by Molmil
Solution structure of the complex between DP1 acidic region and TFIIH p62 PH domain
分子名称: DP1, General transcription factor IIH subunit 1
著者Okuda, M, Nishimura, Y.
登録日2016-07-29
公開日2016-12-07
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献The Interaction Mode of the Acidic Region of the Cell Cycle Transcription Factor DP1 with TFIIH
J. Mol. Biol., 428, 2016
3VOV
DownloadVisualize
BU of 3vov by Molmil
Crystal Structure of ROK Hexokinase from Thermus thermophilus
分子名称: GLYCEROL, Glucokinase, ZINC ION
著者Nakamura, T, Kashima, Y, Mine, S, Oku, T, Uegaki, K.
登録日2012-02-21
公開日2012-06-27
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2.02 Å)
主引用文献Characterization and crystal structure of the thermophilic ROK hexokinase from Thermus thermophilus
J.Biosci.Bioeng., 2012
2DPT
DownloadVisualize
BU of 2dpt by Molmil
Leucyl/phenylalanyl-tRNA-protein transferase complexed with puromycin
分子名称: D(-)-TARTARIC ACID, Leucyl/phenylalanyl-tRNA--protein transferase, PUROMYCIN
著者Suto, K, Shimizu, Y, Tomita, K.
登録日2006-05-14
公開日2007-01-02
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.75 Å)
主引用文献Crystal structures of leucyl/phenylalanyl-tRNA-protein transferase and its complex with an aminoacyl-tRNA analog
Embo J., 25, 2006
2DPS
DownloadVisualize
BU of 2dps by Molmil
Structure of Leucyl/phenylalanyl-tRNA-protein transferase
分子名称: Leucyl/phenylalanyl-tRNA--protein transferase
著者Suto, K, Shimizu, Y, Tomita, K.
登録日2006-05-14
公開日2007-01-02
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Crystal structures of leucyl/phenylalanyl-tRNA-protein transferase and its complex with an aminoacyl-tRNA analog
Embo J., 25, 2006
2E8J
DownloadVisualize
BU of 2e8j by Molmil
Solution structure of dynein light chain 2A
分子名称: Dynein light chain 2A, cytoplasmic
著者Kouno, T, Nabeshima, Y, Mizuguchi, M, Kawano, K.
登録日2007-01-21
公開日2008-01-22
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献Solution structure of dynein light chain 2A
To be Published
3WJ2
DownloadVisualize
BU of 3wj2 by Molmil
Crystal structure of ESTFA (FE-lacking apo form)
分子名称: Carboxylesterase
著者Ohara, K, Unno, H, Oshima, Y, Furukawa, K, Fujino, N, Hirooka, K, Hemmi, H, Takahashi, S, Nishino, T, Kusunoki, M, Nakayama, T.
登録日2013-10-03
公開日2014-07-30
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (1.61 Å)
主引用文献Structural insights into the low pH adaptation of a unique carboxylesterase from Ferroplasma: altering the pH optima of two carboxylesterases.
J.Biol.Chem., 289, 2014
1EWT
DownloadVisualize
BU of 1ewt by Molmil
CRYSTAL STRUCTURE OF METABOTROPIC GLUTAMATE RECEPTOR SUBTYPE 1 LIGAND FREE FORM I
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, METABOTROPIC GLUTAMATE RECEPTOR SUBTYPE 1, SULFATE ION
著者Kunishima, N, Shimada, Y, Tsuji, Y, Jingami, H, Morikawa, K.
登録日2000-04-27
公開日2000-12-18
最終更新日2024-10-16
実験手法X-RAY DIFFRACTION (3.7 Å)
主引用文献Structural basis of glutamate recognition by a dimeric metabotropic glutamate receptor.
Nature, 407, 2000
2DY7
DownloadVisualize
BU of 2dy7 by Molmil
Solution structure of the first chromodomain of yeast Chd1
分子名称: Chromo domain protein 1
著者Okuda, M, Nishimura, Y.
登録日2006-09-07
公開日2006-11-28
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献Structural Polymorphism of Chromodomains in Chd1
J.Mol.Biol., 365, 2007
2Z33
DownloadVisualize
BU of 2z33 by Molmil
Solution structure of the DNA complex of PhoB DNA-binding/transactivation Domain
分子名称: 5'-D(*AP*CP*AP*GP*AP*TP*TP*TP*AP*TP*GP*AP*CP*AP*GP*T)-3', 5'-D(*AP*CP*TP*GP*TP*CP*AP*TP*AP*AP*AP*TP*CP*TP*GP*T)-3', Phosphate regulon transcriptional regulatory protein phoB
著者Yamane, T, Okamura, H, Ikeguchi, M, Nishimura, Y, Kidera, A.
登録日2007-05-31
公開日2008-04-22
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献Water-mediated interactions between DNA and PhoB DNA-binding/transactivation domain: NMR-restrained molecular dynamics in explicit water environment.
Proteins, 71, 2008
3WD7
DownloadVisualize
BU of 3wd7 by Molmil
Type III polyketide synthase
分子名称: COENZYME A, NICKEL (II) ION, SULFATE ION, ...
著者Mori, T, Shimokawa, Y, Matsui, T, Kato, R, Sugio, S, Morita, H, Abe, I.
登録日2013-06-10
公開日2013-09-04
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.35 Å)
主引用文献Cloning, characterization, and crystal structure analysis of novel type III polyketide synthases from Citrus microcarpa
To be Published
3A5P
DownloadVisualize
BU of 3a5p by Molmil
Crystal structure of hemagglutinin
分子名称: Haemagglutinin I
著者Watanabe, N, Sakai, N, Nakamura, T, Nabeshima, Y, Kouno, T, Mizuguchi, M, Kawano, K.
登録日2009-08-10
公開日2010-08-11
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (1.82 Å)
主引用文献The Structure of Physarum polycephalum hemagglutinin I suggests a minimal carbohydrate recognition domain of legume lectin fold
J.Mol.Biol., 405, 2011
3WD8
DownloadVisualize
BU of 3wd8 by Molmil
TypeIII polyketide synthases
分子名称: GLYCEROL, Type III polyketide synthase quinolone synthase
著者Mori, T, Shimokawa, Y, Matsui, T, Morita, H, Abe, I.
登録日2013-06-10
公開日2013-09-04
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.463 Å)
主引用文献Cloning, characterization, and crystal structure analysis of novel type III polyketide synthases from Citrus microcarpa
To be Published
2DY8
DownloadVisualize
BU of 2dy8 by Molmil
Solution structure of the second chromodomain of yeast Chd1
分子名称: Chromo domain protein 1
著者Okuda, M, Nishimura, Y.
登録日2006-09-07
公開日2006-11-28
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献Structural Polymorphism of Chromodomains in Chd1
J.Mol.Biol., 365, 2007
5C5O
DownloadVisualize
BU of 5c5o by Molmil
Structure of SARS-3CL protease complex with a phenyl-beta-alanyl (S,R)-N-decalin type inhibitor
分子名称: (2S)-3-(1H-imidazol-5-yl)-2-({[(3S,4aR,8aS)-2-(N-phenyl-beta-alanyl)decahydroisoquinolin-3-yl]methyl}amino)propanal, 3C-like proteinase
著者Akaji, K, Teruya, K, Shimamoto, Y, Sanjho, A, Yamashita, E, Nakagawa, A.
登録日2015-06-21
公開日2016-06-22
最終更新日2020-01-29
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Fused-ring structure of N-decalin as a novel scaffold for SARS 3CL protease inhibitors
to be published
8I75
DownloadVisualize
BU of 8i75 by Molmil
Crystal structure of decarboxylated osteocalcin at pH 2.0
分子名称: Osteocalcin
著者Yokoyama, T, Nabeshima, Y, Obita, T, Mizuguchi, M.
登録日2023-01-31
公開日2024-01-31
最終更新日2024-10-30
実験手法X-RAY DIFFRACTION (1.33 Å)
主引用文献Structural and mutational analyses of decarboxylated osteocalcin provide insight into its adiponectin-inducing activity.
Febs Lett., 597, 2023

226707

件を2024-10-30に公開中

PDB statisticsPDBj update infoContact PDBjnumon