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PDB: 439 件
6AEK
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BU of 6aek by Molmil
Crystal structure of ENPP1 in complex with pApG
分子名称: 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, ADENOSINE MONOPHOSPHATE, ...
著者Kato, K, Nishimasu, H, Hirano, S, Hirano, H, Ishitani, R, Nureki, O.
登録日2018-08-05
公開日2019-03-06
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Structural insights into cGAMP degradation by Ecto-nucleotide pyrophosphatase phosphodiesterase 1.
Nat Commun, 9, 2018
6AEL
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BU of 6ael by Molmil
Crystal structure of ENPP1 in complex with 3'3'-cGAMP
分子名称: 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-amino-9-[(2R,3R,3aS,5R,7aR,9R,10R,10aS,12R,14aR)-9-(6-amino-9H-purin-9-yl)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecin-2-yl]-1,9-dihydro-6H-purin-6-one, ...
著者Kato, K, Nishimasu, H, Hirano, S, Hirano, H, Ishitani, R, Nureki, O.
登録日2018-08-05
公開日2019-03-06
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Structural insights into cGAMP degradation by Ecto-nucleotide pyrophosphatase phosphodiesterase 1.
Nat Commun, 9, 2018
5GUH
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BU of 5guh by Molmil
Crystal structure of silkworm PIWI-clade Argonaute Siwi bound to piRNA
分子名称: MAGNESIUM ION, PIWI, RNA (28-MER)
著者Matsumoto, N, Nishimasu, H, Ishitani, R, Nureki, O.
登録日2016-08-29
公開日2016-10-19
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Crystal Structure of Silkworm PIWI-Clade Argonaute Siwi Bound to piRNA
Cell, 167, 2016
2OWV
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BU of 2owv by Molmil
Crystal structure of PH0725 from Pyrococcus horikoshii OT3
分子名称: S-ADENOSYL-L-HOMOCYSTEINE, diphthine synthase
著者Sugahara, M, Kageyama, Y, Matsuura, Y, Shimada, H, Kunishima, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2007-02-17
公開日2007-08-21
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Crystal structure of PH0725 from Pyrococcus horikoshii OT3
To be Published
2OWF
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BU of 2owf by Molmil
Crystal structure of PH0725 from Pyrococcus horikoshii OT3
分子名称: S-ADENOSYL-L-HOMOCYSTEINE, diphthine synthase
著者Sugahara, M, Morikawa, Y, Matsuura, Y, Shimada, H, Kunishima, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2007-02-16
公開日2007-08-21
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Crystal structure of PH0725 from Pyrococcus horikoshii OT3
To be Published
7BR0
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BU of 7br0 by Molmil
Crystal structure of AclR, a thioredoxin oxidoreductase fold protein carrying the CXXH catalytic motif
分子名称: FLAVIN-ADENINE DINUCLEOTIDE, Pyr_redox_2 domain-containing protein
著者Hara, K, Hashimoto, H, Maeda, N, Watanabe, K, Hertweck, C, Tsunematsu, Y.
登録日2020-03-26
公開日2020-12-23
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.003 Å)
主引用文献Specialized Flavoprotein Promotes Sulfur Migration and Spiroaminal Formation in Aspirochlorine Biosynthesis.
J.Am.Chem.Soc., 143, 2021
2P9Y
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BU of 2p9y by Molmil
Crystal structure of TTHB049 from Thermus thermophilus HB8
分子名称: Alpha-ribazole-5'-phosphate phosphatase, GLYCEROL, SODIUM ION
著者Sugahara, M, Matsuura, Y, Kageyama, Y, Shimada, H, Kunishima, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2007-03-26
公開日2007-10-02
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Crystal structure of TTHB049 from Thermus thermophilus HB8
To be Published
2P6M
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BU of 2p6m by Molmil
Crystal structure of TTHB049 from Thermus thermophilus HB8
分子名称: Alpha-ribazole-5'-phosphate phosphatase, GLYCEROL, SODIUM ION
著者Sugahara, M, Matsuura, Y, Morikawa, Y, Shimada, H, Kunishima, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2007-03-19
公開日2007-09-25
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Crystal structure of TTHB049 from Thermus thermophilus HB8
To be Published
5GIJ
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BU of 5gij by Molmil
Crystal structure of TDR-TDIF complex
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Leucine-rich repeat receptor-like protein kinase TDR, ...
著者Morita, J, Kato, K, Ishitani, R, Nishimasu, H, Nureki, O.
登録日2016-06-23
公開日2016-08-24
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Crystal structure of the plant receptor-like kinase TDR in complex with the TDIF peptide
Nat Commun, 7, 2016
2P6I
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BU of 2p6i by Molmil
Crystal structure of PH0725 from Pyrococcus horikoshii OT3
分子名称: S-ADENOSYL-L-HOMOCYSTEINE, diphthine synthase
著者Yamamoto, H, Matsuura, Y, Morikawa, Y, Shimada, H, Kunishima, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2007-03-18
公開日2007-09-18
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Crystal structure of PH0725 from Pyrococcus horikoshii OT3
To be Published
2PCK
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BU of 2pck by Molmil
Crystal structure of PH0725 from Pyrococcus horikoshii OT3
分子名称: S-ADENOSYL-L-HOMOCYSTEINE, diphthine synthase
著者Yamamoto, H, Morikawa, Y, Matsuura, Y, Shimada, H, Kunishima, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2007-03-30
公開日2007-10-02
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Crystal structure of PH0725 from Pyrococcus horikoshii OT3
To be Published
2P6L
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BU of 2p6l by Molmil
Crystal structure of PH0725 from Pyrococcus horikoshii OT3
分子名称: S-ADENOSYL-L-HOMOCYSTEINE, diphthine synthase
著者Yamamoto, H, Matsuura, Y, Ono, N, Shimada, H, Kunishima, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2007-03-19
公開日2007-09-25
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Crystal structure of PH0725 from Pyrococcus horikoshii OT3
To be Published
1GEB
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BU of 1geb by Molmil
X-RAY CRYSTAL STRUCTURE AND CATALYTIC PROPERTIES OF THR252ILE MUTANT OF CYTOCHROME P450CAM
分子名称: CAMPHOR, CYTOCHROME P450-CAM, PROTOPORPHYRIN IX CONTAINING FE
著者Hishiki, T, Shimada, H, Nagano, S, Park, S.-Y, Ishimura, Y.
登録日2000-11-01
公開日2000-11-15
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.03 Å)
主引用文献X-ray crystal structure and catalytic properties of Thr252Ile mutant of cytochrome P450cam: roles of Thr252 and water in the active center.
J.Biochem., 128, 2000
3I4D
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BU of 3i4d by Molmil
Photosynthetic reaction center from rhodobacter sphaeroides 2.4.1
分子名称: (2R,3S)-heptane-1,2,3-triol, 1,4-DIETHYLENE DIOXIDE, BACTERIOCHLOROPHYLL A, ...
著者Fujii, R, Adachi, S, Roszak, A.W, Gardiner, A.T, Cogdell, R.J, Isaacs, N.W, Koshihara, S, Hashimoto, H.
登録日2009-07-01
公開日2010-12-01
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2.01 Å)
主引用文献Structure of the carotenoid bound to the reaction centre from Rhodobacter sphaeroides 2.4.1 revealed by time-resolved X-ray crystallography
To be Published
1WN7
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BU of 1wn7 by Molmil
Crystal structure of archaeal family B DNA polymerase mutant
分子名称: Family B DNA Polymerase, GLYCEROL, NICKEL (II) ION
著者Kuroita, T, Matsumura, H, Yokota, N, Hashimoto, H, Imanaka, T, Inoue, T, Kai, Y.
登録日2004-07-28
公開日2005-08-02
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.75 Å)
主引用文献Structural Mechanism for Coordination of Proofreading and Polymerase Activities in Archaeal DNA Polymerases
J.Mol.Biol., 351, 2005
3B0T
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BU of 3b0t by Molmil
Human VDR ligand binding domain in complex with maxacalcitol
分子名称: (1S,3R,5Z,7E,14beta,17alpha,20S)-20-(3-hydroxy-3-methylbutoxy)-9,10-secopregna-5,7,10-triene-1,3-diol, SULFATE ION, Vitamin D3 receptor
著者Hishiki, A, Hashimoto, H, Sato, M, Shimizu, T.
登録日2011-06-14
公開日2011-08-10
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.3 Å)
主引用文献Human VDR ligand binding domain in complex with maxacalcitol
To be Published
1KWK
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BU of 1kwk by Molmil
Crystal structure of Thermus thermophilus A4 beta-galactosidase in complex with galactose
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, ACETATE ION, BETA-GALACTOSIDASE, ...
著者Hidaka, M, Fushinobu, S, Ohtsu, N, Motoshima, H, Matsuzawa, H, Shoun, H, Wakagi, T.
登録日2002-01-29
公開日2002-10-02
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Trimeric crystal structure of the glycoside hydrolase family 42 beta-galactosidase from Thermus thermophilus A4 and the structure of its complex with galactose.
J.Mol.Biol., 322, 2002
3B0R
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BU of 3b0r by Molmil
Human PPAR gamma ligand binding dmain complexed with GW9662 in a covalent bonded form
分子名称: 2-chloro-5-nitro-N-phenylbenzamide, Peroxisome proliferator-activated receptor gamma
著者Tomioka, D, Hashimoto, H, Sato, M, Shimizu, T.
登録日2011-06-13
公開日2011-08-10
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.15 Å)
主引用文献Human PPAR gamma ligand binding dmain complexed with GW9662 in a covalent bonded form
To be published
1KWG
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BU of 1kwg by Molmil
Crystal structure of Thermus thermophilus A4 beta-galactosidase
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, ACETATE ION, BETA-GALACTOSIDASE, ...
著者Hidaka, M, Fushinobu, S, Ohtsu, N, Motoshima, H, Matsuzawa, H, Shoun, H, Wakagi, T.
登録日2002-01-29
公開日2002-09-18
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Trimeric Crystal Structure of the Glycoside Hydrolase Family 42 beta-Galactosidase from Thermus thermophilus A4 and the Structure of its Complex with Galactose
J.MOL.BIOL., 322, 2002
1J1R
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BU of 1j1r by Molmil
Structure of Pokeweed Antiviral Protein from Seeds (PAP-S1) Complexed with Adenine
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, ADENINE, Antiviral Protein S
著者Watanabe, K, Sato, E, Honjo, E, Motoshima, H, Kurokawa, H, Mikami, B, Monzingo, A.F, Robertus, J.D, Fujii, H, Hidaka, A.
登録日2002-12-14
公開日2004-02-03
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Crystal Structure of Pokweed Antiviral Protein from Seeds (PAP-S1) at 1.8 Angstrom Resolution
To be published
1J1S
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BU of 1j1s by Molmil
Pokeweed Antiviral Protein from Seeds (PAP-S1) Complexed with Formycin
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, Antiviral Protein S, FORMYCIN-5'-MONOPHOSPHATE
著者Watanabe, K, Sato, E, Honjo, E, Motoshima, H, Kurokawa, H, Mikami, B, Monzingo, A.F, Robertus, J.D, Fujii, H, Hidaka, A.
登録日2002-12-14
公開日2004-02-03
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Crystal Structure of Pokweed Antiviral Protein from Seeds (PAP-S1) at 1.8 Angstrom Resolution
To be published
1ZBZ
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BU of 1zbz by Molmil
High-Resolution Crystal Structure of Compound I intermediate of Cytochrome c Peroxidase (CcP)
分子名称: Cytochrome c peroxidase, PROTOPORPHYRIN IX CONTAINING FE
著者Bonagura, C.A, Bhaskar, B, Shimizu, H, Li, H, Sundaramoorthy, M, McRee, D.E, Goodin, D.B, Poulos, T.L.
登録日2005-04-09
公開日2005-05-03
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.29 Å)
主引用文献High-resolution crystal structures and spectroscopy of native and compound I cytochrome c peroxidase
Biochemistry, 42, 2003
6IGX
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BU of 6igx by Molmil
Crystal structure of human CAP-G in complex with CAP-H
分子名称: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, Condensin complex subunit 2, Condensin complex subunit 3
著者Hara, K, Migita, T, Shimizu, K, Hashimoto, H.
登録日2018-09-26
公開日2019-03-13
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (2.995 Å)
主引用文献Structural basis of HEAT-kleisin interactions in the human condensin I subcomplex.
Embo Rep., 20, 2019
1ZBY
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BU of 1zby by Molmil
High-Resolution Crystal Structure of Native (Resting) Cytochrome c Peroxidase (CcP)
分子名称: Cytochrome c peroxidase, PROTOPORPHYRIN IX CONTAINING FE
著者Bonagura, C.A, Bhaskar, B, Shimizu, H, Li, H, Sundaramoorthy, M, McRee, D.E, Goodin, D.B, Poulos, T.L.
登録日2005-04-09
公開日2005-05-03
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.2 Å)
主引用文献High-resolution crystal structures and spectroscopy of native and compound I cytochrome c peroxidase
Biochemistry, 42, 2003
1XSS
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BU of 1xss by Molmil
Semi-rational engineering of a green-emitting coral fluorescent protein into an efficient highlighter.
分子名称: MAGNESIUM ION, SODIUM ION, fluorescent protein
著者Tsutsui, H, Karasawa, S, Shimizu, H, Nukina, N, Miyawaki, A.
登録日2004-10-20
公開日2005-03-15
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Semi-rational engineering of a coral fluorescent protein into an efficient highlighter
Embo Rep., 6, 2005

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