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PDB: 1963 件
2Y1R
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BU of 2y1r by Molmil
Structure of MecA121 & ClpC N-domain complex
分子名称: ADAPTER PROTEIN MECA 1, NEGATIVE REGULATOR OF GENETIC COMPETENCE CLPC/MECB, S,R MESO-TARTARIC ACID
著者Wang, F, Mei, Z.Q, Wang, J.W, Shi, Y.G.
登録日2010-12-10
公開日2011-03-16
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (2.595 Å)
主引用文献Structure and Mechanism of the Hexameric Meca-Clpc Molecular Machine.
Nature, 471, 2011
2Y1Q
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BU of 2y1q by Molmil
Crystal Structure of ClpC N-terminal Domain
分子名称: NEGATIVE REGULATOR OF GENETIC COMPETENCE CLPC/MECB, SULFATE ION
著者Wang, F, Mei, Z.Q, Wang, J.W, Shi, Y.G.
登録日2010-12-10
公開日2011-03-16
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Structure and Mechanism of the Hexameric Meca-Clpc Molecular Machine.
Nature, 471, 2011
2CWB
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BU of 2cwb by Molmil
Solution Structure of the Ubiquitin-Associated Domain of Human BMSC-UbP and its Complex with Ubiquitin
分子名称: Immunoglobulin G-binding protein G,Ubiquitin-like protein 7
著者Chang, Y.G, Song, A.X, Gao, Y.G, Shi, Y.H, Lin, X.J, Cao, X.T, Lin, D.H, Hu, H.Y.
登録日2005-06-17
公開日2006-06-06
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献Solution structure of the ubiquitin-associated domain of human BMSC-UbP and its complex with ubiquitin.
Protein Sci., 15, 2006
8JL9
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BU of 8jl9 by Molmil
Cryo-EM structure of the human nucleosome with scFv
分子名称: DNA (193-MER), Histone H2A type 1-B/E, Histone H2B type 1-J, ...
著者Oishi, T, Hatazawa, S, Kujirai, T, Kato, J, Kobayashi, Y, Ogasawara, M, Akatsu, M, Takizawa, Y, Kurumizaka, H.
登録日2023-06-02
公開日2023-10-04
最終更新日2023-11-08
実験手法ELECTRON MICROSCOPY (2.65 Å)
主引用文献Contributions of histone tail clipping and acetylation in nucleosome transcription by RNA polymerase II.
Nucleic Acids Res., 51, 2023
8JLD
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BU of 8jld by Molmil
Cryo-EM structure of the 145 bp human nucleosome containing acetylated H3 tail
分子名称: DNA (145-MER), Histone H2A type 1-B/E, Histone H2B type 1-J, ...
著者Oishi, T, Hatazawa, S, Kujirai, T, Kato, J, Kobayashi, Y, Ogasawara, M, Akatsu, M, Takizawa, Y, Kurumizaka, H.
登録日2023-06-02
公開日2023-10-04
最終更新日2023-11-15
実験手法ELECTRON MICROSCOPY (2.48 Å)
主引用文献Contributions of histone tail clipping and acetylation in nucleosome transcription by RNA polymerase II.
Nucleic Acids Res., 51, 2023
8JLA
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BU of 8jla by Molmil
Cryo-EM structure of the human nucleosome lacking N-terminal region of H2A, H2B, H3, and H4
分子名称: DNA (193-MER), Histone H2A type 1-B/E, Histone H2B type 1-J, ...
著者Oishi, T, Hatazawa, S, Kujirai, T, Kato, J, Kobayashi, Y, Ogasawara, M, Akatsu, M, Takizawa, Y, Kurumizaka, H.
登録日2023-06-02
公開日2023-10-04
最終更新日2023-11-08
実験手法ELECTRON MICROSCOPY (3.44 Å)
主引用文献Contributions of histone tail clipping and acetylation in nucleosome transcription by RNA polymerase II.
Nucleic Acids Res., 51, 2023
1Z6T
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BU of 1z6t by Molmil
Structure of the apoptotic protease-activating factor 1 bound to ADP
分子名称: ADENOSINE-5'-DIPHOSPHATE, Apoptotic protease activating factor 1
著者Riedl, S.J, Li, W, Chao, Y, Schwarzenbacher, R, Shi, Y.
登録日2005-03-23
公開日2005-04-19
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (2.21 Å)
主引用文献Structure of the apoptotic protease-activating factor 1 bound to ADP
Nature, 434, 2005
2IS8
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BU of 2is8 by Molmil
Crystal structure of the Molybdopterin biosynthesis enzyme MoaB (TTHA0341) from thermus theromophilus HB8
分子名称: FORMIC ACID, Molybdopterin biosynthesis enzyme, MoaB
著者Jeyakanthan, J, Kanaujia, S.P, Vasuki Ranjani, C, Sekar, K, Baba, S, Ebihara, A, Kuramitsu, S, Shinkai, A, Shiro, Y, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2006-10-16
公開日2007-10-30
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.64 Å)
主引用文献Crystal structure of the molybdopterin biosynthesis enzyme MoaB (TTHA0341) from thermus theromophilus HB8
To be Published
6Z1M
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BU of 6z1m by Molmil
Structure of an Ancestral glycosidase (family 1) bound to heme
分子名称: 1,2-ETHANEDIOL, Ancestral reconstructed glycosidase, GLYCEROL, ...
著者Gavira, J.A, Risso, V.A, Sanchez-Ruiz, J.M, Gamiz-Arco, G, Gutierrez-Rus, L, Ibarra-Molero, B, Oshino, Y, Petrovic, D, Romero-Rivera, A, Seelig, B, Kamerlin, S.C.L, Gaucher, E.A.
登録日2020-05-14
公開日2020-07-22
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (2.45 Å)
主引用文献Heme-binding enables allosteric modulation in an ancient TIM-barrel glycosidase.
Nat Commun, 12, 2021
2AIN
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BU of 2ain by Molmil
Solution structure of the AF-6 PDZ domain complexed with the C-terminal peptide from the Bcr protein
分子名称: 6-mer peptide from Breakpoint cluster region protein, Afadin
著者Chen, Q, Wu, J, Shi, Y.
登録日2005-07-30
公開日2006-07-18
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献Solution structure and backbone dynamics of the AF-6 PDZ domain/Bcr peptide complex.
Protein Sci., 16, 2007
2AX5
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BU of 2ax5 by Molmil
Solution Structure of Urm1 from Saccharomyces Cerevisiae
分子名称: Hypothetical 11.0 kDa protein in FAA3-MAS3 intergenic region
著者Xu, J, Huang, H, Zhang, J, Wu, J, Shi, Y.
登録日2005-09-03
公開日2006-06-27
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献Solution structure of Urm1 and its implications for the origin of protein modifiers.
Proc.Natl.Acad.Sci.Usa, 103, 2006
2AYO
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BU of 2ayo by Molmil
Structure of USP14 bound to ubquitin aldehyde
分子名称: Ubiquitin, Ubiquitin carboxyl-terminal hydrolase 14
著者Hu, M, Li, P, Jeffrey, P.D, Shi, Y.
登録日2005-09-07
公開日2005-10-18
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (3.5 Å)
主引用文献Structure and mechanisms of the proteasome-associated deubiquitinating enzyme USP14.
Embo J., 24, 2005
2A5Y
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BU of 2a5y by Molmil
Structure of a CED-4/CED-9 complex
分子名称: ADENOSINE-5'-TRIPHOSPHATE, Apoptosis regulator ced-9, MAGNESIUM ION, ...
著者Yan, N, Liu, Q, Hao, Q, Gu, L, Shi, Y.
登録日2005-07-01
公開日2005-10-11
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Structure of the CED-4-CED-9 complex provides insights into programmed cell death in Caenorhabditis elegans.
Nature, 437, 2005
1YOP
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BU of 1yop by Molmil
The solution structure of Kti11p
分子名称: Kti11p, ZINC ION
著者Sun, J, Zhang, J, Wu, F, Xu, C, Li, S, Zhao, W, Wu, Z, Wu, J, Zhou, C.-Z, Shi, Y.
登録日2005-01-28
公開日2005-04-05
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献Solution structure of Kti11p from Saccharomyces cerevisiae reveals a novel zinc-binding module.
Biochemistry, 44, 2005
3V6P
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BU of 3v6p by Molmil
Crystal structure of the DNA-binding domain of dHax3, a TAL effector
分子名称: dHax3
著者Deng, D, Yan, C.Y, Pan, X.J, Wang, J.W, Shi, Y.G, Yan, N.
登録日2011-12-20
公開日2012-01-18
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2.401 Å)
主引用文献Structural Basis for Sequence-Specific Recognition of DNA by TAL Effectors
Science, 2012
1Z8U
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BU of 1z8u by Molmil
Crystal structure of oxidized alpha hemoglobin bound to AHSP
分子名称: Alpha-hemoglobin stabilizing protein, Hemoglobin alpha chain, PROTOPORPHYRIN IX CONTAINING FE
著者Feng, L, Zhou, S, Gu, L, Gell, D.A, Mackay, J.P, Weiss, M.J, Gow, A.J, Shi, Y.
登録日2005-03-31
公開日2005-06-14
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Structure of oxidized alpha-haemoglobin bound to AHSP reveals a protective mechanism for haem.
Nature, 435, 2005
3V6T
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BU of 3v6t by Molmil
Crystal structure of the DNA-bound dHax3, a TAL effector, at 1.85 angstrom
分子名称: DNA (5'-D(*AP*GP*AP*GP*AP*GP*AP*TP*AP*AP*AP*GP*GP*GP*AP*CP*A)-3'), DNA (5'-D(*TP*GP*TP*CP*CP*CP*TP*TP*TP*AP*TP*CP*TP*CP*TP*CP*T)-3'), dHax3
著者Deng, D, Yan, C.Y, Pan, X.J, Wang, J.W, Yan, N, Shi, Y.G.
登録日2011-12-20
公開日2012-01-18
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Structural Basis for Sequence-Specific Recognition of DNA by TAL Effectors
Science, 2012
2AYN
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BU of 2ayn by Molmil
Structure of USP14, a proteasome-associated deubiquitinating enzyme
分子名称: Ubiquitin carboxyl-terminal hydrolase 14
著者Hu, M, Li, P, Jeffrey, P.D, Shi, Y.
登録日2005-09-07
公開日2005-10-18
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (3.2 Å)
主引用文献Structure and mechanisms of the proteasome-associated deubiquitinating enzyme USP14.
Embo J., 24, 2005
4UX1
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BU of 4ux1 by Molmil
Cryo-EM structure of antagonist-bound E2P gastric H,K-ATPase (SCH.E2. AlF)
分子名称: POTASSIUM-TRANSPORTING ATPASE ALPHA CHAIN 1, POTASSIUM-TRANSPORTING ATPASE SUBUNIT BETA
著者Abe, K, Tani, K, Fujiyoshi, Y.
登録日2014-08-18
公開日2014-09-17
最終更新日2014-11-12
実験手法ELECTRON CRYSTALLOGRAPHY (8 Å)
主引用文献Systematic Comparison of Molecular Conformations of H+,K+-ATPase Reveals an Important Contribution of the A-M2 Linker for the Luminal Gating.
J.Biol.Chem., 289, 2014
8J4C
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BU of 8j4c by Molmil
YeeE(TsuA)-YeeD(TsuB) complex for thiosulfate uptake
分子名称: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, Spirochaeta thermophila YeeE(TsuA)-YeeD(TsuB),UPF0033 domain-containing protein, SirA-like domain-containing protein (chimera), ...
著者Ikei, M, Miyazaki, R, Monden, K, Naito, Y, Takeuchi, A, Takahashi, Y.S, Tanaka, Y, Ichikawa, M, Tsukazaki, T.
登録日2023-04-19
公開日2024-03-27
実験手法X-RAY DIFFRACTION (3.34 Å)
主引用文献Structure and function of YeeE-YeeD complex for sophisticated thiosulfate uptake
To Be Published
3UO8
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BU of 3uo8 by Molmil
Crystal structure of the MALT1 paracaspase (P1 form)
分子名称: Mucosa-associated lymphoid tissue lymphoma translocation protein 1, Z-Val-Arg-Pro-DL-Arg-fluoromethylketone
著者Jeffrey, P.D, Yu, J.W, Shi, Y.
登録日2011-11-16
公開日2011-12-21
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Crystal structure of the mucosa-associated lymphoid tissue lymphoma translocation 1 (MALT1) paracaspase region.
Proc.Natl.Acad.Sci.USA, 108, 2011
3UOA
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BU of 3uoa by Molmil
Crystal structure of the MALT1 paracaspase (P21 form)
分子名称: MAGNESIUM ION, Mucosa-associated lymphoid tissue lymphoma translocation protein 1, Z-Val-Arg-Pro-DL-Arg-fluoromethylketone
著者Jeffrey, P.D, Yu, J.W, Shi, Y.
登録日2011-11-16
公開日2011-12-21
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献Crystal structure of the mucosa-associated lymphoid tissue lymphoma translocation 1 (MALT1) paracaspase region.
Proc.Natl.Acad.Sci.USA, 108, 2011
3T7J
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BU of 3t7j by Molmil
Crystal structure of Rtt107p (residues 820-1070)
分子名称: Regulator of Ty1 transposition protein 107
著者Li, X, Li, F, Wu, J, Shi, Y.
登録日2011-07-30
公開日2012-02-15
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2.042 Å)
主引用文献Structure of C-terminal Tandem BRCT Repeats of Rtt107 Protein Reveals Critical Role in Interaction with Phosphorylated Histone H2A during DNA Damage Repair
J.Biol.Chem., 287, 2012
3T7I
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Crystal structure of Se-Met Rtt107p (residues 820-1070)
分子名称: Regulator of Ty1 transposition protein 107
著者Li, X, Li, F, Wu, J, Shi, Y.
登録日2011-07-30
公開日2012-02-15
最終更新日2017-11-08
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Structure of C-terminal Tandem BRCT Repeats of Rtt107 Protein Reveals Critical Role in Interaction with Phosphorylated Histone H2A during DNA Damage Repair
J.Biol.Chem., 287, 2012
3T7K
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Complex structure of Rtt107p and phosphorylated histone H2A
分子名称: Histone H2A.1, Regulator of Ty1 transposition protein 107
著者Li, X, Li, F, Wu, J, Shi, Y.
登録日2011-07-30
公開日2012-02-15
最終更新日2017-11-08
実験手法X-RAY DIFFRACTION (2.028 Å)
主引用文献Structure of C-terminal Tandem BRCT Repeats of Rtt107 Protein Reveals Critical Role in Interaction with Phosphorylated Histone H2A during DNA Damage Repair
J.Biol.Chem., 287, 2012

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