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PDB: 2087 件
2LMK
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Solution Structure of Mouse Pheromone ESP1
分子名称: Exocrine gland-secreting peptide 1
著者Yoshinaga, S, Sato, T, Hirakane, M, Esaki, K, Hamaguchi, T, Haga-Yamanaka, S, Tsunoda, M, Kimoto, H, Shimada, I, Touhara, K, Terasawa, H.
登録日2011-12-06
公開日2013-04-17
最終更新日2023-06-14
実験手法SOLUTION NMR
主引用文献Structure of the Mouse Sex Peptide Pheromone ESP1 Reveals a Molecular Basis for Specific Binding to the Class-C G-Protein-Coupled Vomeronasal Receptor
J.Biol.Chem., 2013
8H4V
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Mincle CRD complex with PGL trisaccharide
分子名称: (2~{R},3~{R},4~{S},5~{S},6~{R})-6-(methoxymethyl)oxane-2,3,4,5-tetrol-(1-4)-6-deoxy-2,3-di-O-methyl-alpha-L-mannopyranose-(1-2)-3-O-methyl-alpha-L-rhamnopyranose, C-type lectin domain family 4 member E, CALCIUM ION
著者Ishizuka, S, Nagae, M, Yamasaki, S.
登録日2022-10-11
公開日2023-08-09
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献PGL-III, a Rare Intermediate of Mycobacterium leprae Phenolic Glycolipid Biosynthesis, Is a Potent Mincle Ligand.
Acs Cent.Sci., 9, 2023
8HB5
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Crystal structure of Mincle in complex with HD-275
分子名称: (2~{R},3~{R},4~{S},5~{S},6~{R})-6-(methoxymethyl)oxane-2,3,4,5-tetrol, C-type lectin domain family 4 member E, CALCIUM ION
著者Ishizuka, S, Nagae, M, Yamasaki, S.
登録日2022-10-27
公開日2023-08-09
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献PGL-III, a Rare Intermediate of Mycobacterium leprae Phenolic Glycolipid Biosynthesis, Is a Potent Mincle Ligand.
Acs Cent.Sci., 9, 2023
1IU7
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BU of 1iu7 by Molmil
HOLO FORM OF COPPER-CONTAINING AMINE OXIDASE FROM ARTHROBACTER GLOBIFORMIS
分子名称: AMINE OXIDASE, COPPER (II) ION
著者Kishishita, S, Okajima, T, Kim, M, Yamaguchi, H, Hirota, S, Suzuki, S, Kuroda, S, Tanizawa, K, Mure, M.
登録日2002-02-28
公開日2003-02-04
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Role of Copper Ion in Bacterial Copper Amine Oxidase: Spectroscopic and Crystallographic Studies of Metal-Substituted Enzymes
J.AM.CHEM.SOC., 125, 2003
1IQY
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CRYSTAL STRUCTURE OF NICKEL-SUBSTITUTED AMINE OXIDASE FROM ARTHROBACTER GLOBIFORMIS
分子名称: AMINE OXIDASE, NICKEL (II) ION
著者Kishishita, S, Okajima, T, Mure, M, Kim, M, Yamaguchi, H, Hirota, S, Kuroda, S, Tanizawa, K.
登録日2001-08-28
公開日2003-02-04
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Role of Copper Ion in Bacterial Copper Amine Oxidase: Spectroscopic and Crystallographic Studies of Metal-Substituted Enzymes
J.AM.CHEM.SOC., 125, 2003
1IQX
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BU of 1iqx by Molmil
CRYSTAL STRUCTURE OF COBALT-SUBSTITUTED AMINE OXIDASE FROM ARTHROBACTER GLOBIFORMIS
分子名称: CO(II)-SUBSTITUTED AMINE OXIDASE, COBALT (II) ION
著者Kishishita, S, Okajima, T, Mure, M, Kim, M, Yamaguchi, H, Hirota, S, Suzuki, S, Kuroda, S, Tanizawa, K.
登録日2001-08-27
公開日2003-02-04
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Role of Copper Ion in Bacterial Copper Amine Oxidase: Spectroscopic and Crystallographic Studies of Metal-Substituted Enzymes
J.AM.CHEM.SOC., 125, 2003
1C6X
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BU of 1c6x by Molmil
ALTERNATE BINDING SITE FOR THE P1-P3 GROUP OF A CLASS OF POTENT HIV-1 PROTEASE INHIBITORS AS A RESULT OF CONCERTED STRUCTURAL CHANGE IN 80'S LOOP.
分子名称: N-[2(S)-CYCLOPENTYL-1(R)-HYDROXY-3(R)METHYL]-5-[(2(S)-TERTIARY-BUTYLAMINO-CARBONYL)-4-(N1-(2)-(N-METHYLPIPERAZINYL)-3-CHLORO-PYRAZINYL-5-CARBONYL)-PIPERAZINO]-4(S)-HYDROXY-2(R)-PHENYLMETHYL-PENTANAMIDE, PROTEIN (PROTEASE)
著者Munshi, S.
登録日1999-12-28
公開日2000-12-28
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献An alternate binding site for the P1-P3 group of a class of potent HIV-1 protease inhibitors as a result of concerted structural change in the 80s loop of the protease.
Acta Crystallogr.,Sect.D, 56, 2000
1C6Y
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ALTERNATE BINDING SITE FOR THE P1-P3 GROUP OF A CLASS OF POTENT HIV-1 PROTEASE INHIBITORS AS A RESULT OF CONCERTED STRUCTURAL CHANGE IN 80'S LOOP.
分子名称: N-[2(R)-HYDROXY-1(S)-INDANYL]-5-[(2(S)-TERTIARY BUTYLAMINOCARBONYL)-4(3-PYRIDYLMETHYL)PIPERAZINO]-4(S)-HYDROXY-2(R)-PHENYLMETHYLPENTANAMIDE, PROTEIN (PROTEASE)
著者Munshi, S.
登録日1999-12-28
公開日2000-12-28
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献An alternate binding site for the P1-P3 group of a class of potent HIV-1 protease inhibitors as a result of concerted structural change in the 80s loop of the protease.
Acta Crystallogr.,Sect.D, 56, 2000
1BYJ
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BU of 1byj by Molmil
GENTAMICIN C1A A-SITE COMPLEX
分子名称: 2,6-diamino-2,3,4,6-tetradeoxy-alpha-D-erythro-hexopyranose, 3,5-DIAMINO-CYCLOHEXANOL, 3-deoxy-4-C-methyl-3-(methylamino)-beta-L-arabinopyranose, ...
著者Yoshizawa, S, Fourmy, D, Puglisi, J.D.
登録日1998-10-16
公開日1999-10-29
最終更新日2023-12-27
実験手法SOLUTION NMR
主引用文献Structural origins of gentamicin antibiotic action.
EMBO J., 17, 1998
8JT1
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BU of 8jt1 by Molmil
COLLAGENASE FROM GRIMONTIA (VIBRIO) HOLLISAE 1706B COMPLEXED WITH GLY-PRO-HYP-GLY-PRO-HYP
分子名称: 1,2-ETHANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 6-mer peptide, ...
著者Ueshima, S, Yaskawa, K, Takita, T, Mikami, B.
登録日2023-06-21
公開日2024-02-07
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Insights into the catalytic mechanism of Grimontia hollisae collagenase through structural and mutational analyses.
Febs Lett., 597, 2023
1C70
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BU of 1c70 by Molmil
ALTERNATE BINDING SITE FOR THE P1-P3 GROUP OF A CLASS OF POTENT HIV-1 PROTEASE INHIBITORS AS A RESULT OF CONCERTED STRUCTURAL CHANGE IN 80'S LOOP.
分子名称: N-[2(R)-HYDROXY-1(S)-INDANYL]-2(R)-PHENYLMETHYL-4(S)-HYDROXY-5-[4-[2-BENZOFURANYLMETHYL]-2(S)-[TERT-BUTYLAMINOCARBONYL]-PIPERAZINYL]-PENTANEAMIDE, PROTEIN (PROTEASE)
著者Munshi, S.
登録日1999-12-29
公開日2000-12-28
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献An alternate binding site for the P1-P3 group of a class of potent HIV-1 protease inhibitors as a result of concerted structural change in the 80s loop of the protease.
Acta Crystallogr.,Sect.D, 56, 2000
1CVM
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BU of 1cvm by Molmil
CADMIUM INHIBITED CRYSTAL STRUCTURE OF PHYTASE FROM BACILLUS AMYLOLIQUEFACIENS
分子名称: CADMIUM ION, CALCIUM ION, PHYTASE
著者Shin, S, Ha, N.-C, Oh, B.-H.
登録日1999-08-24
公開日2000-02-24
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Crystal structures of a novel, thermostable phytase in partially and fully calcium-loaded states.
Nat.Struct.Biol., 7, 2000
1BK1
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BU of 1bk1 by Molmil
ENDO-1,4-BETA-XYLANASE C
分子名称: ENDO-1,4-B-XYLANASE C
著者Fushinobu, S, Ito, K, Konno, M, Wakagi, T, Matsuzawa, H.
登録日1998-07-14
公開日1999-01-13
最終更新日2023-08-02
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Crystallographic and mutational analyses of an extremely acidophilic and acid-stable xylanase: biased distribution of acidic residues and importance of Asp37 for catalysis at low pH.
Protein Eng., 11, 1998
6ICS
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BU of 6ics by Molmil
Loop deletion mutant (deleting four residues)
分子名称: Outer surface protein A
著者Shiga, S, Makabe, K.
登録日2018-09-06
公開日2019-07-03
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献Domain-Swapping Design by Polyproline Rod Insertion.
Chembiochem, 20, 2019
6IDC
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BU of 6idc by Molmil
Loop deletion and proline insertion mutant (deleting six residues and inserted six proline residues)
分子名称: Outer surface protein A
著者Shiga, S, Makabe, K.
登録日2018-09-09
公開日2019-07-03
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.007 Å)
主引用文献Domain-Swapping Design by Polyproline Rod Insertion.
Chembiochem, 20, 2019
6IF6
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BU of 6if6 by Molmil
Structure of the periplasmic domain of SflA
分子名称: GLYCEROL, PHOSPHATE ION, Protein SflA
著者Nishikawa, S, Sakuma, M, Kojima, S, Homma, M, Imada, K.
登録日2018-09-18
公開日2019-05-01
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Structure of the periplasmic domain of SflA involved in spatial regulation of the flagellar biogenesis of Vibrio reveals a TPR/SLR-like fold.
J.Biochem., 166, 2019
4ZXE
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BU of 4zxe by Molmil
X-ray crystal structure of chitosan-binding module 1 derived from chitosanase/glucanase from Paenibacillus sp. IK-5.
分子名称: 1,2-ETHANEDIOL, Glucanase/Chitosanase, SULFATE ION
著者Shinya, S, Oi, H, Kitaoku, Y, Ohnuma, T, Numata, T, Fukamizo, T.
登録日2015-05-20
公開日2016-04-13
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献Mechanism of chitosan recognition by CBM32 carbohydrate-binding modules from a Paenibacillus sp. IK-5 chitosanase/glucanase
Biochem.J., 473, 2016
1IQ3
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SOLUTION STRUCTURE OF THE EPS15 HOMOLOGY DOMAIN OF A HUMAN POB1
分子名称: CALCIUM ION, RALBP1-INTERACTING PROTEIN (PARTNER OF RALBP1)
著者Koshiba, S, Kigawa, T, Iwahara, J, Kikuchi, A, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2001-06-06
公開日2001-06-27
最終更新日2023-12-27
実験手法SOLUTION NMR
主引用文献Solution structure of the Eps15 homology domain of a human POB1 (partner of RalBP1).
FEBS Lett., 442, 1999
6IYS
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BU of 6iys by Molmil
Loop deletion and proline insertion mutant (deleting six residues and inserted three proline residues)
分子名称: Outer surface protein A
著者Shiga, S, Makabe, K.
登録日2018-12-17
公開日2019-07-03
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Domain-Swapping Design by Polyproline Rod Insertion.
Chembiochem, 20, 2019
6JP9
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BU of 6jp9 by Molmil
Crsytal structure of a XMP complexed ATPPase subunit of M. jannaschii GMP synthetase
分子名称: GMP synthase [glutamine-hydrolyzing] subunit B, MALONIC ACID, TRIETHYLENE GLYCOL, ...
著者Shivakumarasamy, S, Balaram, H.
登録日2019-03-26
公開日2020-04-22
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Mechanistic Insights into the Functioning of a Two-Subunit GMP Synthetase, an Allosterically Regulated, Ammonia Channeling Enzyme.
Biochemistry, 61, 2022
4ZY9
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BU of 4zy9 by Molmil
X-ray crystal structure of selenomethionine-labelled V110M mutant of chitosan-binding module 1 derived from chitosanase/glucanase from Paenibacillus sp. IK-5
分子名称: Glucanase/chitosanase
著者Shinya, S, Oi, H, Kitaoku, Y, Ohnuma, T, Numata, T, Fukamizo, T.
登録日2015-05-21
公開日2016-04-13
最終更新日2020-02-19
実験手法X-RAY DIFFRACTION (1.2 Å)
主引用文献Mechanism of chitosan recognition by CBM32 carbohydrate-binding modules from a Paenibacillus sp. IK-5 chitosanase/glucanase
Biochem.J., 473, 2016
4ZZ8
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X-ray crystal structure of chitosan-binding module 2 in complex with chitotriose derived from chitosanase/glucanase from Paenibacillus sp. IK-5
分子名称: 1,2-ETHANEDIOL, 2-amino-2-deoxy-beta-D-glucopyranose-(1-4)-2-amino-2-deoxy-beta-D-glucopyranose-(1-4)-2-amino-2-deoxy-beta-D-glucopyranose, Glucanase/chitosanase, ...
著者Shinya, S, Oi, H, Kitaoku, Y, Ohnuma, T, Numata, T, Fukamizo, T.
登録日2015-05-22
公開日2016-04-13
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (1.65 Å)
主引用文献Mechanism of chitosan recognition by CBM32 carbohydrate-binding modules from a Paenibacillus sp. IK-5 chitosanase/glucanase
Biochem.J., 473, 2016
4ZZ5
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X-ray crystal structure of chitosan-binding module 2 derived from chitosanase/glucanase from Paenibacillus sp. IK-5
分子名称: 1,2-ETHANEDIOL, Glucanase/chitosanase, SULFATE ION
著者Shinya, S, Oi, H, Kitaoku, Y, Ohnuma, T, Numata, T, Fukamizo, T.
登録日2015-05-22
公開日2016-04-13
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (1.29 Å)
主引用文献Mechanism of chitosan recognition by CBM32 carbohydrate-binding modules from a Paenibacillus sp. IK-5 chitosanase/glucanase
Biochem.J., 473, 2016
3SQG
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BU of 3sqg by Molmil
Crystal structure of a methyl-coenzyme M reductase purified from Black Sea mats
分子名称: (17[2]S)-17[2]-methylthio-coenzyme F43, 1-THIOETHANESULFONIC ACID, CALCIUM ION, ...
著者Shima, S, Krueger, M, Weinert, T, Demmer, U, Thauer, R.K, Ermler, U.
登録日2011-07-05
公開日2011-11-30
最終更新日2017-11-08
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Structure of a methyl-coenzyme M reductase from Black Sea mats that oxidize methane anaerobically.
Nature, 481, 2011
6IEI
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Loop deletion and proline insertion mutant (deleting six residues and inserted five proline residues)
分子名称: Outer surface protein A
著者Shiga, S, Makabe, K.
登録日2018-09-14
公開日2019-07-03
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Domain-Swapping Design by Polyproline Rod Insertion.
Chembiochem, 20, 2019

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