3AM1
 
 | | Crystal structure of O-Phosphoseryl-tRNA kinase complexed with anticodon-stem/loop truncated tRNA(Sec) | | Descriptor: | ADENOSINE-5'-TRIPHOSPHATE, ASL-truncated tRNA, L-seryl-tRNA(Sec) kinase, ... | | Authors: | Araiso, Y, Ishitani, R, Nureki, O. | | Deposit date: | 2010-08-11 | | Release date: | 2010-12-29 | | Last modified: | 2023-11-01 | | Method: | X-RAY DIFFRACTION (2.4 Å) | | Cite: | C-terminal domain of archaeal O-phosphoseryl-tRNA kinase displays large-scale motion to bind the 7-bp D-stem of archaeal tRNA(Sec)
Nucleic Acids Res., 39, 2011
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3AQP
 | | Crystal structure of SecDF, a translocon-associated membrane protein, from Thermus thrmophilus | | Descriptor: | Probable SecDF protein-export membrane protein | | Authors: | Tsukazaki, T, Mori, H, Echizen, Y, Ishitani, R, Fukai, S, Tanaka, T, Perederina, A, Vassylyev, D.G, Kohno, T, Ito, K, Nureki, O. | | Deposit date: | 2010-11-16 | | Release date: | 2011-05-18 | | Last modified: | 2024-03-13 | | Method: | X-RAY DIFFRACTION (3.3 Å) | | Cite: | Structure and function of a membrane component SecDF that enhances protein export
Nature, 474, 2011
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2ZNJ
 | | Crystal structure of Pyrrolysyl-tRNA synthetase from Desulfitobacterium hafniense | | Descriptor: | Putative uncharacterized protein | | Authors: | Nozawa, K, Araiso, Y, Soll, D, Ishitani, R, Nureki, O. | | Deposit date: | 2008-04-25 | | Release date: | 2008-12-30 | | Last modified: | 2024-04-03 | | Method: | X-RAY DIFFRACTION (2.5 Å) | | Cite: | Pyrrolysyl-tRNA synthetase-tRNA(Pyl) structure reveals the molecular basis of orthogonality
Nature, 457, 2009
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2ZWA
 | | Crystal structure of tRNA wybutosine synthesizing enzyme TYW4 | | Descriptor: | 1,2-ETHANEDIOL, CITRIC ACID, Leucine carboxyl methyltransferase 2, ... | | Authors: | Suzuki, Y, Noma, A, Suzuki, T, Ishitani, R, Nureki, O. | | Deposit date: | 2008-12-01 | | Release date: | 2009-06-02 | | Last modified: | 2024-03-13 | | Method: | X-RAY DIFFRACTION (1.7 Å) | | Cite: | Structural basis of tRNA modification with CO2 fixation and methylation by wybutosine synthesizing enzyme TYW4.
Nucleic Acids Res., 37, 2009
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3AQO
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3A1V
 | | Crystal structue of the cytosolic domain of T. maritima FeoB iron iransporter in apo form | | Descriptor: | (4R)-2-METHYLPENTANE-2,4-DIOL, (4S)-2-METHYL-2,4-PENTANEDIOL, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, ... | | Authors: | Hattori, M, Ishitani, R, Nureki, O. | | Deposit date: | 2009-04-22 | | Release date: | 2009-09-22 | | Last modified: | 2023-11-01 | | Method: | X-RAY DIFFRACTION (2.4 Å) | | Cite: | Structural basis of novel interactions between the small-GTPase and GDI-like domains in prokaryotic FeoB iron transporter
Structure, 17, 2009
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3A5Y
 | | Crystal structure of GenX from Escherichia coli in complex with lysyladenylate analog | | Descriptor: | 5'-O-[(L-LYSYLAMINO)SULFONYL]ADENOSINE, Putative lysyl-tRNA synthetase | | Authors: | Sumida, T, Yanagisawa, T, Ishii, R, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | | Deposit date: | 2009-08-17 | | Release date: | 2010-08-25 | | Last modified: | 2023-11-01 | | Method: | X-RAY DIFFRACTION (1.9 Å) | | Cite: | A paralog of lysyl-tRNA synthetase aminoacylates a conserved lysine residue in translation elongation factor P.
Nat.Struct.Mol.Biol., 17, 2010
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2ZY9
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3AII
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3A4N
 | | Crystal structure of archaeal O-phosphoseryl-tRNA(Sec) kinase | | Descriptor: | 1,2-ETHANEDIOL, IODIDE ION, L-seryl-tRNA(Sec) kinase, ... | | Authors: | Araiso, Y, Ishitani, R, Soll, D, Nureki, O. | | Deposit date: | 2009-07-10 | | Release date: | 2009-10-20 | | Last modified: | 2024-03-13 | | Method: | X-RAY DIFFRACTION (2.5 Å) | | Cite: | Structure of a tRNA-dependent kinase essential for selenocysteine decoding
Proc.Natl.Acad.Sci.USA, 106, 2009
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3AL6
 | | Crystal structure of Human TYW5 | | Descriptor: | 2-OXOGLUTARIC ACID, JmjC domain-containing protein C2orf60, NICKEL (II) ION | | Authors: | Kato, M, Araiso, Y, Ishitani, R, Nureki, O. | | Deposit date: | 2010-07-26 | | Release date: | 2010-12-01 | | Last modified: | 2024-03-13 | | Method: | X-RAY DIFFRACTION (2.8 Å) | | Cite: | Crystal structure of a novel JmjC-domain-containing protein, TYW5, involved in tRNA modification.
Nucleic Acids Res., 39, 2011
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3A4L
 | | Crystal structure of archaeal O-phosphoseryl-tRNA(Sec) kinase | | Descriptor: | 1,2-ETHANEDIOL, IODIDE ION, L-seryl-tRNA(Sec) kinase, ... | | Authors: | Araiso, Y, Ishitani, R, Soll, D, Nureki, O. | | Deposit date: | 2009-07-10 | | Release date: | 2009-10-20 | | Last modified: | 2024-03-13 | | Method: | X-RAY DIFFRACTION (1.8 Å) | | Cite: | Structure of a tRNA-dependent kinase essential for selenocysteine decoding
Proc.Natl.Acad.Sci.USA, 106, 2009
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2ZW9
 | | Crystal structure of tRNA wybutosine synthesizing enzyme TYW4 | | Descriptor: | Leucine carboxyl methyltransferase 2, S-ADENOSYLMETHIONINE | | Authors: | Suzuki, Y, Noma, A, Suzuki, T, Ishitani, R, Nureki, O. | | Deposit date: | 2008-12-01 | | Release date: | 2009-06-02 | | Last modified: | 2024-03-13 | | Method: | X-RAY DIFFRACTION (2.5 Å) | | Cite: | Structural basis of tRNA modification with CO2 fixation and methylation by wybutosine synthesizing enzyme TYW4.
Nucleic Acids Res., 37, 2009
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2Z2U
 | | Crystal structure of archaeal TYW1 | | Descriptor: | UPF0026 protein MJ0257 | | Authors: | Suzuki, Y, Ishitani, R, Nureki, O. | | Deposit date: | 2007-05-28 | | Release date: | 2007-10-23 | | Last modified: | 2024-03-13 | | Method: | X-RAY DIFFRACTION (2.4 Å) | | Cite: | Crystal Structure of the Radical SAM Enzyme Catalyzing Tricyclic Modified Base Formation in tRNA
J.Mol.Biol., 372, 2007
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2ZJS
 | | Crystal Structure of SecYE translocon from Thermus thermophilus with a Fab fragment | | Descriptor: | Fab56 (heavy chain), Fab56 (light chain), Preprotein translocase SecE subunit, ... | | Authors: | Tsukazaki, T, Mori, H, Fukai, S, Ishitani, R, Perederina, A, Vassylyev, D.G, Ito, K, Nureki, O. | | Deposit date: | 2008-03-08 | | Release date: | 2008-10-14 | | Last modified: | 2021-11-10 | | Method: | X-RAY DIFFRACTION (3.2 Å) | | Cite: | Conformational transition of Sec machinery inferred from bacterial SecYE structures
Nature, 455, 2008
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2DR8
 | | Complex structure of CCA-adding enzyme with tRNAminiDC and CTP | | Descriptor: | CCA-adding enzyme, CYTIDINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ... | | Authors: | Tomita, K, Ishitani, R, Fukai, S, Nureki, O. | | Deposit date: | 2006-06-08 | | Release date: | 2006-11-14 | | Last modified: | 2024-03-13 | | Method: | X-RAY DIFFRACTION (2.5 Å) | | Cite: | Complete crystallographic analysis of the dynamics of CCA sequence addition
Nature, 443, 2006
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2DR9
 | | Complex structure of CCA-adding enzyme with tRNAminiDCC | | Descriptor: | CCA-adding enzyme, SULFATE ION, tRNA (34-MER) | | Authors: | Tomita, K, Ishitani, R, Fukai, S, Nureki, O. | | Deposit date: | 2006-06-08 | | Release date: | 2006-11-14 | | Last modified: | 2024-03-13 | | Method: | X-RAY DIFFRACTION (2.8 Å) | | Cite: | Complete crystallographic analysis of the dynamics of CCA sequence addition
Nature, 443, 2006
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2EL9
 | | Crystal structure of E.coli Histidyl-tRNA synthetase complexed with a histidyl-adenylate analogue | | Descriptor: | 5'-O-[(L-HISTIDYLAMINO)SULFONYL]ADENOSINE, Histidyl-tRNA synthetase | | Authors: | Yanagisawa, T, Si, S.Y, Matsuno, M, Ishii, R, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | | Deposit date: | 2007-03-27 | | Release date: | 2008-03-18 | | Last modified: | 2023-10-25 | | Method: | X-RAY DIFFRACTION (2.7 Å) | | Cite: | Crystal structure of E.coli Histidyl-tRNA synthetase complexed with a histidyl-adenylate analogue
To be published
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2EL7
 | | Crystal structure of Tryptophanyl-tRNA synthetase from Thermus thermophilus | | Descriptor: | PHOSPHATE ION, Tryptophanyl-tRNA synthetase | | Authors: | Yanagisawa, T, Sumida, T, Ishii, R, Sekine, S, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | | Deposit date: | 2007-03-26 | | Release date: | 2008-03-18 | | Last modified: | 2023-10-25 | | Method: | X-RAY DIFFRACTION (2.5 Å) | | Cite: | Crystal structure of Tryptophanyl-tRNA synthetase from Thermus thermophilus
To be published
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2EQB
 | | Crystal structure of the Rab GTPase Sec4p, the Sec2p GEF domain, and phosphate complex | | Descriptor: | PHOSPHATE ION, Rab guanine nucleotide exchange factor SEC2, Ras-related protein SEC4 | | Authors: | Sato, Y, Fukai, S, Ishitani, R, Nureki, O. | | Deposit date: | 2007-03-30 | | Release date: | 2007-05-22 | | Last modified: | 2024-03-13 | | Method: | X-RAY DIFFRACTION (2.7 Å) | | Cite: | Crystal structure of the Sec4p{middle dot}Sec2p complex in the nucleotide exchanging intermediate state
Proc.Natl.Acad.Sci.Usa, 104, 2007
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2DRA
 | | Complex structure of CCA-adding enzyme with tRNAminiDCC and ATP | | Descriptor: | ADENOSINE-5'-TRIPHOSPHATE, CCA-adding enzyme, MAGNESIUM ION, ... | | Authors: | Tomita, K, Ishitani, R, Fukai, S, Nureki, O. | | Deposit date: | 2006-06-08 | | Release date: | 2006-11-14 | | Last modified: | 2024-03-13 | | Method: | X-RAY DIFFRACTION (2.5 Å) | | Cite: | Complete crystallographic analysis of the dynamics of CCA sequence addition
Nature, 443, 2006
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2DRB
 | | Complex structure of CCA-adding enzyme with tRNAminiCCA | | Descriptor: | CCA-adding enzyme, SULFATE ION, tRNA (35-MER) | | Authors: | Tomita, K, Ishitani, R, Fukai, S, Nureki, O. | | Deposit date: | 2006-06-08 | | Release date: | 2006-11-14 | | Last modified: | 2024-03-13 | | Method: | X-RAY DIFFRACTION (2.8 Å) | | Cite: | Complete crystallographic analysis of the dynamics of CCA sequence addition
Nature, 443, 2006
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2DR5
 | | Complex structure of CCA adding enzyme with mini-helix lacking CCA | | Descriptor: | CCA-adding enzyme, SULFATE ION, tRNA (32-MER) | | Authors: | Tomita, K, Ishitani, R, Fukai, S, Nureki, O. | | Deposit date: | 2006-06-08 | | Release date: | 2006-10-31 | | Last modified: | 2023-10-25 | | Method: | X-RAY DIFFRACTION (2.8 Å) | | Cite: | Complete crystallographic analysis of the dynamics of CCA sequence addition
Nature, 443, 2006
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3BRK
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2DR7
 | | Complex structure of CCA-adding enzyme with tRNAminiDC | | Descriptor: | CCA-adding enzyme, SULFATE ION, tRNA (33-MER) | | Authors: | Tomita, K, Ishitani, R, Fukai, S, Nureki, O. | | Deposit date: | 2006-06-08 | | Release date: | 2006-11-14 | | Last modified: | 2024-03-13 | | Method: | X-RAY DIFFRACTION (2.8 Å) | | Cite: | Complete crystallographic analysis of the dynamics of CCA sequence addition
Nature, 443, 2006
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