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PDB: 598 件
8IAW
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Crystal structure of Streptococcus pneumoniae pyruvate kinase in complex with phosphoenolpyruvate
分子名称: MAGNESIUM ION, PHOSPHOENOLPYRUVATE, Pyruvate kinase, ...
著者Nakashima, R, Taguchi, A.
登録日2023-02-09
公開日2023-06-14
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (2.89 Å)
主引用文献Functional and structural characterization of Streptococcus pneumoniae pyruvate kinase involved in fosfomycin resistance.
J.Biol.Chem., 299, 2023
8IAU
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BU of 8iau by Molmil
Crystal structure of Streptococcus pneumoniae pyruvate kinase in complex with oxalate and fructose 1,6-bisphosphate
分子名称: 1,6-di-O-phosphono-beta-D-fructofuranose, DI(HYDROXYETHYL)ETHER, MAGNESIUM ION, ...
著者Nakashima, R, Taguchi, A.
登録日2023-02-09
公開日2023-06-14
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Functional and structural characterization of Streptococcus pneumoniae pyruvate kinase involved in fosfomycin resistance.
J.Biol.Chem., 299, 2023
8IAV
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BU of 8iav by Molmil
Crystal structure of Streptococcus pneumoniae pyruvate kinase in complex with fructose 1,6-bisphosphate
分子名称: 1,6-di-O-phosphono-beta-D-fructofuranose, Pyruvate kinase
著者Nakashima, R, Taguchi, A.
登録日2023-02-09
公開日2023-06-14
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (2.59 Å)
主引用文献Functional and structural characterization of Streptococcus pneumoniae pyruvate kinase involved in fosfomycin resistance.
J.Biol.Chem., 299, 2023
6IE9
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BU of 6ie9 by Molmil
RamR in complex with chenodeoxycholic acid
分子名称: CHENODEOXYCHOLIC ACID, Regulatory protein, SULFATE ION
著者Nakashima, R, Sakurai, K, Yamasaki, S, Nishino, K.
登録日2018-09-13
公開日2019-02-13
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.78 Å)
主引用文献Crystal structure of the multidrug resistance regulator RamR complexed with bile acids.
Sci Rep, 9, 2019
2E5D
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BU of 2e5d by Molmil
Crystal structure of Human NMPRTase complexed with nicotinamide
分子名称: NICOTINAMIDE, Nicotinamide phosphoribosyltransferase
著者Takahashi, R, Nakamura, S, Kobayashi, Y, Ohkubo, T.
登録日2006-12-20
公開日2007-12-25
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Structure and reaction mechanism of human nicotinamide phosphoribosyltransferase
J.Biochem., 147, 2010
2E5C
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BU of 2e5c by Molmil
Crystal structure of Human NMPRTase complexed with 5'-phosphoribosyl-1'-pyrophosphate
分子名称: 1-O-pyrophosphono-5-O-phosphono-alpha-D-ribofuranose, Nicotinamide phosphoribosyltransferase
著者Takahashi, R, Nakamura, S, Kobayashi, Y, Ohkubo, T.
登録日2006-12-20
公開日2007-12-25
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Structure and reaction mechanism of human nicotinamide phosphoribosyltransferase
J.Biochem., 147, 2010
7D5R
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BU of 7d5r by Molmil
Structure of the Ca2+-bound C646A mutant of peptidylarginine deiminase type III (PAD3)
分子名称: CALCIUM ION, CHLORIDE ION, GLYCEROL, ...
著者Mashimo, R, Akimoto, M, Unno, M.
登録日2020-09-28
公開日2021-06-02
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (3.148 Å)
主引用文献Structures of human peptidylarginine deiminase type III provide insights into substrate recognition and inhibitor design.
Arch.Biochem.Biophys., 708, 2021
3OOL
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BU of 3ool by Molmil
I-SceI complexed with C/G+4 DNA substrate
分子名称: 5'-D(*CP*AP*CP*GP*CP*TP*AP*GP*GP*GP*AP*TP*AP*AP*CP*CP*GP*GP*GP*TP*AP*AP*TP*AP*C)-3', 5'-D(*GP*GP*TP*AP*TP*TP*AP*CP*CP*CP*GP*GP*TP*TP*AP*TP*CP*CP*CP*TP*AP*GP*CP*GP*T)-3', CALCIUM ION, ...
著者Joshi, R, Chen, J.-H, Golden, B.L, Gimble, F.S.
登録日2010-08-31
公開日2010-11-17
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Evolution of I-SceI Homing Endonucleases with Increased DNA Recognition Site Specificity.
J.Mol.Biol., 405, 2011
7CAO
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BU of 7cao by Molmil
Crystal structure of red chromoprotein from Olindias formosa
分子名称: Chromoprotein
著者Nakashima, R, Zhai, L, Ike, Y, Matsudz, T, Nagai, T.
登録日2020-06-09
公開日2022-04-20
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.05 Å)
主引用文献Structure-based analysis and evolution of a monomerized red-colored chromoprotein from the Olindias formosa jellyfish.
Protein Sci., 31, 2022
3OOR
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BU of 3oor by Molmil
I-SceI mutant (K86R/G100T)complexed with C/G+4 DNA substrate
分子名称: 5'-D(*CP*AP*CP*GP*CP*TP*AP*GP*GP*GP*AP*TP*AP*AP*CP*CP*GP*GP*GP*TP*AP*AP*TP*AP*C)-3', 5'-D(*GP*GP*TP*AP*TP*TP*AP*CP*CP*CP*GP*GP*TP*TP*AP*TP*CP*CP*CP*TP*AP*GP*CP*GP*T)-3', CALCIUM ION, ...
著者Joshi, R, Chen, J.-H, Golden, B.L, Gimble, F.S.
登録日2010-08-31
公開日2010-11-17
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Evolution of I-SceI Homing Endonucleases with Increased DNA Recognition Site Specificity.
J.Mol.Biol., 405, 2011
2EY4
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BU of 2ey4 by Molmil
Crystal Structure of a Cbf5-Nop10-Gar1 Complex
分子名称: Probable tRNA pseudouridine synthase B, Ribosome biogenesis protein Nop10, ZINC ION, ...
著者Rashid, R, Liang, B, Li, H, Southeast Collaboratory for Structural Genomics (SECSG)
登録日2005-11-09
公開日2006-01-24
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (2.11 Å)
主引用文献Crystal structure of a Cbf5-Nop10-Gar1 complex and implications in RNA-guided pseudouridylation and dyskeratosis congenita.
Mol.Cell, 21, 2006
6IIA
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MexB in complex with LMNG
分子名称: Lauryl Maltose Neopentyl Glycol, Multidrug resistance protein MexB
著者Nakashima, R, Sakurai, K, Nakao, K.
登録日2018-10-04
公開日2019-03-27
最終更新日2023-12-13
実験手法X-RAY DIFFRACTION (2.91 Å)
主引用文献Crystal structures of multidrug efflux pump MexB bound with high-molecular-mass compounds.
Sci Rep, 9, 2019
1Q9P
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Solution structure of the mature HIV-1 protease monomer
分子名称: HIV-1 Protease
著者Ishima, R, Torchia, D.A, Lynch, S.M, Gronenborn, A.M, Louis, J.M.
登録日2003-08-25
公開日2004-03-02
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献Solution structure of the mature HIV-1 protease monomer: Insight into the tertiary fold and stability of a precursor
J.Biol.Chem., 278, 2003
1UDS
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BU of 1uds by Molmil
Crystal structure of the tRNA processing enzyme RNase PH R126A mutant from Aquifex aeolicus
分子名称: PHOSPHATE ION, Ribonuclease PH, SULFATE ION
著者Ishii, R, Nureki, O, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2003-05-02
公開日2003-09-23
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Crystal Structure of the tRNA Processing Enzyme RNase PH from Aquifex aeolicus
J.Biol.Chem., 278, 2003
1UDN
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BU of 1udn by Molmil
Crystal structure of the tRNA processing enzyme RNase PH from Aquifex aeolicus
分子名称: PHOSPHATE ION, Ribonuclease PH, SULFATE ION
著者Ishii, R, Nureki, O, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2003-05-02
公開日2003-09-23
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Crystal Structure of the tRNA Processing Enzyme RNase PH from Aquifex aeolicus
J.Biol.Chem., 278, 2003
1UDO
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BU of 1udo by Molmil
Crystal structure of the tRNA processing enzyme RNase PH R86A mutant from Aquifex aeolicus
分子名称: PHOSPHATE ION, Ribonuclease PH, SULFATE ION
著者Ishii, R, Nureki, O, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2003-05-02
公開日2003-09-23
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Crystal Structure of the tRNA Processing Enzyme RNase PH from Aquifex aeolicus
J.Biol.Chem., 278, 2003
1UDQ
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BU of 1udq by Molmil
Crystal structure of the tRNA processing enzyme RNase PH T125A mutant from Aquifex aeolicus
分子名称: PHOSPHATE ION, Ribonuclease PH, SULFATE ION
著者Ishii, R, Nureki, O, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2003-05-02
公開日2003-09-23
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Crystal Structure of the tRNA Processing Enzyme RNase PH from Aquifex aeolicus
J.Biol.Chem., 278, 2003
1WD5
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Crystal structure of TT1426 from Thermus thermophilus HB8
分子名称: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, hypothetical protein TT1426
著者Shibata, R, Kukimoto-Niino, M, Murayama, K, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2004-05-11
公開日2004-11-11
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Crystal structure of a predicted phosphoribosyltransferase (TT1426) from Thermus thermophilus HB8 at 2.01 A resolution
Protein Sci., 14, 2005
2LAB
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BU of 2lab by Molmil
Solution Strucuture of the CBM25-2 of beta/alpha-amylase from Paenibacillus polymyxa
分子名称: Beta/alpha-amylase
著者Takahashi, R, Nishimura, S, Ohkubo, T, Yoshida, T.
登録日2011-03-09
公開日2012-04-04
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献A functional and structural analysis of tundem family 25 carbohydrate-binding modules from Paenibacillus polymyxa beta/alpha-amylase
To be Published
3W1W
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BU of 3w1w by Molmil
Protein-drug complex
分子名称: 1,2-ETHANEDIOL, 2-HYDROXYBENZOIC ACID, CHOLIC ACID, ...
著者Ishii, R, Gupta, V, Yamaguchi, Y, Handa, H, Nureki, O.
登録日2012-11-21
公開日2013-10-09
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.006 Å)
主引用文献Salicylic Acid induces mitochondrial injury by inhibiting ferrochelatase heme biosynthesis activity
Mol.Pharmacol., 84, 2013
3VYW
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BU of 3vyw by Molmil
Crystal structure of MNMC2 from Aquifex Aeolicus
分子名称: BENZAMIDINE, MNMC2, S-ADENOSYLMETHIONINE
著者Shibata, R, Bessho, Y, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2012-10-03
公開日2012-10-17
最終更新日2022-08-24
実験手法X-RAY DIFFRACTION (2.49 Å)
主引用文献Characterization and structure of the Aquifex aeolicus protein DUF752: a bacterial tRNA-methyltransferase (MnmC2) functioning without the usually fused oxidase domain (MnmC1).
J.Biol.Chem., 287, 2012
2E7Y
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High resolution structure of T. maritima tRNase Z
分子名称: S-1,2-PROPANEDIOL, SULFATE ION, ZINC ION, ...
著者Ishii, R, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2007-01-15
公開日2007-09-11
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.97 Å)
主引用文献The structure of the flexible arm of Thermotoga maritima tRNase Z differs from those of homologous enzymes
Acta Crystallogr.,Sect.F, 63, 2007
5Y01
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BU of 5y01 by Molmil
Acid-tolerant monomeric GFP, Gamillus, non-fluorescence (OFF) state
分子名称: Green fluorescent protein, PHOSPHATE ION
著者Nakashima, R, Sakurai, K, Shinoda, H, Matsuda, T, Nagai, T.
登録日2017-07-14
公開日2018-01-17
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (2.65 Å)
主引用文献Acid-Tolerant Monomeric GFP from Olindias formosa.
Cell Chem Biol, 25, 2018
5Y00
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Acid-tolerant monomeric GFP, Gamillus, fluorescence (ON) state
分子名称: CHLORIDE ION, GLYCEROL, Green fluorescent protein, ...
著者Nakashima, R, Sakurai, K, Shinoda, H, Matsuda, T, Nagai, T.
登録日2017-07-14
公開日2018-01-17
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Acid-Tolerant Monomeric GFP from Olindias formosa.
Cell Chem Biol, 25, 2018
2CY1
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Crystal structure of APE1850
分子名称: NusA protein homolog
著者Shibata, R, Bessho, Y, Umehara, T, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2005-07-04
公開日2006-01-04
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Crystallization of the archaeal transcription termination factor NusA: a significant decrease in twinning under microgravity conditions
Acta Crystallogr.,Sect.F, 63, 2007

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