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PDB: 1490 件

7W9W
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BU of 7w9w by Molmil
2.02 angstrom cryo-EM structure of the pump-like channelrhodopsin ChRmine
分子名称: CHOLESTEROL, ChRmine, PALMITIC ACID, ...
著者Kishi, K.E, Kim, Y, Fukuda, M, Yamashita, K, Deisseroth, K, Kato, H.E.
登録日2021-12-11
公開日2022-02-02
最終更新日2022-03-09
実験手法ELECTRON MICROSCOPY (2 Å)
主引用文献Structural basis for channel conduction in the pump-like channelrhodopsin ChRmine.
Cell, 185, 2022
4PDN
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BU of 4pdn by Molmil
Crystal structure of E. coli YfcM
分子名称: MAGNESIUM ION, Uncharacterized protein
著者Kobayashi, K, Ishii, R, Ishitani, R, Nureki, O.
登録日2014-04-19
公開日2015-03-04
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (1.448 Å)
主引用文献The non-canonical hydroxylase structure of YfcM reveals a metal ion-coordination motif required for EF-P hydroxylation.
Nucleic Acids Res., 42, 2014
6VGR
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BU of 6vgr by Molmil
Crystal Structure of Human Dipeptidase 3 in Complex with Fab of SC-003
分子名称: Dipeptidase 3, SC-003 Fab Heavy Chain, SC-003 Fab Light Chain
著者Hayashi, K, Longenecker, K.L, Vivona, S.
登録日2020-01-08
公開日2020-05-13
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (2.84 Å)
主引用文献Structure of human DPEP3 in complex with the SC-003 antibody Fab fragment reveals basis for lack of dipeptidase activity.
J.Struct.Biol., 211, 2020
6GF7
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BU of 6gf7 by Molmil
Molecular basis of egg coat filament cross-linking: Zn-SAD structure of the partially deglycosylated ZP1 ZP-N1 domain homodimer
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, ZINC ION, Zona pellucida sperm-binding protein 1,Zona pellucida sperm-binding protein 1
著者Nishimura, K, Jovine, L.
登録日2018-04-29
公開日2019-06-19
最終更新日2020-07-29
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Molecular basis of egg coat cross-linking sheds light on ZP1-associated female infertility.
Nat Commun, 10, 2019
8F5D
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BU of 8f5d by Molmil
Architecture of the MurE-MurF ligase bacterial cell wall biosynthesis complex
分子名称: Multifunctional fusion protein, SULFATE ION
著者Shirakawa, K.T, Sala, F.A, Miyachiro, M.M, Job, V, Trindade, D.M, Dessen, A.
登録日2022-11-14
公開日2023-06-07
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (2.56 Å)
主引用文献Architecture and genomic arrangement of the MurE-MurF bacterial cell wall biosynthesis complex.
Proc.Natl.Acad.Sci.USA, 120, 2023
8T8A
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BU of 8t8a by Molmil
Structure of arginine oxidase from Pseudomonas sp. TRU 7192
分子名称: Amine oxidoreductase, FLAVIN-ADENINE DINUCLEOTIDE
著者Takahashi, K, Yamaguchi, H, Tatsumi, M, Sugiki, M.
登録日2023-06-22
公開日2024-06-26
実験手法X-RAY DIFFRACTION (3.4 Å)
主引用文献Structural basis of arginine oxidase from Pseudomonas sp. TRU 7192
To Be Published
6GF6
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BU of 6gf6 by Molmil
Molecular basis of egg coat filament cross-linking: high-resolution structure of the partially deglycosylated ZP1 ZP-N1 domain homodimer
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, GLYCEROL, Zona pellucida sperm-binding protein 1,Zona pellucida sperm-binding protein 1
著者Nishimura, K, Jovine, L.
登録日2018-04-29
公開日2019-06-19
最終更新日2024-05-01
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Molecular basis of egg coat cross-linking sheds light on ZP1-associated female infertility.
Nat Commun, 10, 2019
6GF8
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BU of 6gf8 by Molmil
Molecular basis of egg coat filament cross-linking: structure of the glycosylated ZP1 ZP-N1 domain homodimer
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, ...
著者Nishimura, K, Jovine, L.
登録日2018-04-29
公開日2019-06-19
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (3.1 Å)
主引用文献Molecular basis of egg coat cross-linking sheds light on ZP1-associated female infertility.
Nat Commun, 10, 2019
1BHA
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BU of 1bha by Molmil
THREE-DIMENSIONAL STRUCTURE OF (1-71) BACTERIOOPSIN SOLUBILIZED IN METHANOL-CHLOROFORM AND SDS MICELLES DETERMINED BY 15N-1H HETERONUCLEAR NMR SPECTROSCOPY
分子名称: BACTERIORHODOPSIN
著者Pervushin, K.V, Orekhov, V.Y, Popov, A.I, Musina, L.Y, Arseniev, A.S.
登録日1993-10-11
公開日1994-01-31
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献Three-dimensional structure of (1-71)bacterioopsin solubilized in methanol/chloroform and SDS micelles determined by 15N-1H heteronuclear NMR spectroscopy.
Eur.J.Biochem., 219, 1994
6VGO
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BU of 6vgo by Molmil
Crystal Structure of Human Dipeptidase 3
分子名称: Dipeptidase 3
著者Hayashi, K, Longenecker, K.L, Vivona, S.
登録日2020-01-08
公開日2020-05-13
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (1.82 Å)
主引用文献Structure of human DPEP3 in complex with the SC-003 antibody Fab fragment reveals basis for lack of dipeptidase activity.
J.Struct.Biol., 211, 2020
7T81
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BU of 7t81 by Molmil
Model of Munc13-1 C1-C2B-MUN-C2C 2D crystal between lipid bilayers.
分子名称: Protein unc-13 homolog A
著者Grushin, K, Sindelar, C.V.
登録日2021-12-15
公開日2022-02-09
最終更新日2024-02-28
実験手法ELECTRON MICROSCOPY (10 Å)
主引用文献Munc13 structural transitions and oligomers that may choreograph successive stages in vesicle priming for neurotransmitter release.
Proc.Natl.Acad.Sci.USA, 119, 2022
6FRK
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BU of 6frk by Molmil
Structure of a prehandover mammalian ribosomal SRP and SRP receptor targeting complex
分子名称: 28S ribosomal RNA, 5.8S ribosomal RNA, 5S ribosomal RNA, ...
著者Kobayashi, K, Jomaa, A, Ban, N.
登録日2018-02-16
公開日2018-03-28
最終更新日2018-05-02
実験手法ELECTRON MICROSCOPY (3.7 Å)
主引用文献Structure of a prehandover mammalian ribosomal SRP·SRP receptor targeting complex.
Science, 360, 2018
1D2T
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BU of 1d2t by Molmil
CRYSTAL STRUCTURE OF ACID PHOSPHATASE FROM ESCHERICHIA BLATTAE
分子名称: ACID PHOSPHATASE, SULFATE ION
著者Ishikawa, K, Mihara, Y, Gondoh, K, Suzuki, E, Asano, Y.
登録日1999-09-28
公開日2000-12-06
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献X-ray structures of a novel acid phosphatase from Escherichia blattae and its complex with the transition-state analog molybdate.
EMBO J., 19, 2000
5D9C
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BU of 5d9c by Molmil
Luciferin-regenerating enzyme solved by SIRAS using XFEL (refined against Hg derivative data)
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, Luciferin regenerating enzyme, MAGNESIUM ION, ...
著者Yamashita, K, Pan, D, Okuda, T, Murai, T, Kodan, A, Yamaguchi, T, Gomi, K, Kajiyama, N, Kato, H, Ago, H, Yamamoto, M, Nakatsu, T.
登録日2015-08-18
公開日2015-09-23
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献An isomorphous replacement method for efficient de novo phasing for serial femtosecond crystallography.
Sci Rep, 5, 2015
7T7C
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BU of 7t7c by Molmil
The hexagonal organization of Munc13-1 C1-C2B-MUN-C2C domains between lipid bilayers
分子名称: Protein unc-13 homolog A Chimera
著者Grushin, K, Sindelar, C.V.
登録日2021-12-15
公開日2022-02-09
最終更新日2024-02-28
実験手法ELECTRON MICROSCOPY (10 Å)
主引用文献Munc13 structural transitions and oligomers that may choreograph successive stages in vesicle priming for neurotransmitter release.
Proc.Natl.Acad.Sci.USA, 119, 2022
8WJ2
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BU of 8wj2 by Molmil
cryo-EM structure of human haemoglobin in deoxy form
分子名称: Hemoglobin subunit alpha, Hemoglobin subunit beta, PROTOPORPHYRIN IX CONTAINING FE
著者Takahashi, K, Lee, Y, Fago, A, Bautista, N.M, Kawamoto, A, Kurisu, G, Storz, J, Nishizawa, T, Tame, J.R.H.
登録日2023-09-25
公開日2024-08-14
実験手法ELECTRON MICROSCOPY (2.35 Å)
主引用文献The unique allosteric property of crocodilian haemoglobin elucidated by cryo-EM.
Nat Commun, 15, 2024
8WIX
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BU of 8wix by Molmil
cryo-EM structure of alligator haemoglobin in carbonmonoxy form
分子名称: CARBON MONOXIDE, Hemoglobin subunit alpha, Hemoglobin subunit beta, ...
著者Takahashi, K, Lee, Y, Fago, A, Bautista, N.M, Kawamoto, A, Kurisu, G, Storz, J, Nishizawa, T, Tame, J.R.H.
登録日2023-09-25
公開日2024-08-14
実験手法ELECTRON MICROSCOPY (2.29 Å)
主引用文献The unique allosteric property of crocodilian haemoglobin elucidated by cryo-EM.
Nat Commun, 15, 2024
8WJ1
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BU of 8wj1 by Molmil
cryo-EM structure of human haemoglobin in oxy form
分子名称: Hemoglobin subunit alpha, Hemoglobin subunit beta, OXYGEN MOLECULE, ...
著者Takahashi, K, Lee, Y, Fago, A, Bautista, N.M, Kawamoto, A, Kurisu, G, Storz, J, Nishizawa, T, Tame, J.R.H.
登録日2023-09-25
公開日2024-08-14
実験手法ELECTRON MICROSCOPY (2.27 Å)
主引用文献The unique allosteric property of crocodilian haemoglobin elucidated by cryo-EM.
Nat Commun, 15, 2024
8WIY
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BU of 8wiy by Molmil
cryo-EM structure of alligator haemoglobin in oxy form
分子名称: Hemoglobin subunit alpha, Hemoglobin subunit beta, OXYGEN MOLECULE, ...
著者Takahashi, K, Lee, Y, Fago, A, Bautista, N.M, Kawamoto, A, Kurisu, G, Storz, J, Nishizawa, T, Tame, J.R.H.
登録日2023-09-25
公開日2024-08-14
実験手法ELECTRON MICROSCOPY (2.31 Å)
主引用文献The unique allosteric property of crocodilian haemoglobin elucidated by cryo-EM.
Nat Commun, 15, 2024
8WIZ
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BU of 8wiz by Molmil
cryo-EM structure of alligator haemoglobin in deoxy form
分子名称: BICARBONATE ION, Hemoglobin subunit alpha, Hemoglobin subunit beta, ...
著者Takahashi, K, Lee, Y, Fago, A, Bautista, N.M, Kawamoto, A, Kurisu, G, Storz, J, Nishizawa, T, Tame, J.R.H.
登録日2023-09-25
公開日2024-08-14
実験手法ELECTRON MICROSCOPY (2.2 Å)
主引用文献The unique allosteric property of crocodilian haemoglobin elucidated by cryo-EM.
Nat Commun, 15, 2024
8WJ0
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BU of 8wj0 by Molmil
cryo-EM structure of human haemoglobin in carbonmonoxy form
分子名称: CARBON MONOXIDE, Hemoglobin subunit alpha, Hemoglobin subunit beta, ...
著者Takahashi, K, Lee, Y, Fago, A, Bautista, N.M, Kawamoto, A, Kurisu, G, Storz, J, Nishizawa, T, Tame, J.R.H.
登録日2023-09-25
公開日2024-08-14
実験手法ELECTRON MICROSCOPY (2.24 Å)
主引用文献The unique allosteric property of crocodilian haemoglobin elucidated by cryo-EM.
Nat Commun, 15, 2024
5AWF
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BU of 5awf by Molmil
Crystal structure of SufB-SufC-SufD complex from Escherichia coli
分子名称: FeS cluster assembly protein SufB, FeS cluster assembly protein SufD, Probable ATP-dependent transporter SufC
著者Hirabayashi, K, Wada, K.
登録日2015-07-03
公開日2015-11-11
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (2.957 Å)
主引用文献Functional Dynamics Revealed by the Structure of the SufBCD Complex, a Novel ATP-binding Cassette (ABC) Protein That Serves as a Scaffold for Iron-Sulfur Cluster Biogenesis
J.Biol.Chem., 290, 2015
5MR3
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BU of 5mr3 by Molmil
Crystal structure of red abalone egg VERL repeat 2 with linker in complex with sperm lysin at 1.8 A resolution
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, CHLORIDE ION, Egg-lysin, ...
著者Nishimura, K, Raj, I, Sadat Al-Hosseini, H, De Sanctis, D, Jovine, L.
登録日2016-12-21
公開日2017-06-14
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Structural Basis of Egg Coat-Sperm Recognition at Fertilization.
Cell, 169, 2017
5AWG
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BU of 5awg by Molmil
Crystal structure of Hg-bound SufB-SufC-SufD complex from Escherichia coli
分子名称: FeS cluster assembly protein SufB, FeS cluster assembly protein SufD, MERCURY (II) ION, ...
著者Hirabayashi, K, Wada, K.
登録日2015-07-03
公開日2015-11-11
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (4.278 Å)
主引用文献Functional Dynamics Revealed by the Structure of the SufBCD Complex, a Novel ATP-binding Cassette (ABC) Protein That Serves as a Scaffold for Iron-Sulfur Cluster Biogenesis
J.Biol.Chem., 290, 2015
7CGR
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BU of 7cgr by Molmil
Crystal structure of Azospirillum brasilense L-arabinose 1-dehydrogenase E147A mutant (NADP and glycerol bound form)
分子名称: GLYCEROL, L-arabinose 1-dehydrogenase (NAD(P)(+)), NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
著者Yoshiwara, K, Watanabe, Y, Watanabe, S.
登録日2020-07-02
公開日2020-07-29
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.093 Å)
主引用文献Crystal structure of bacterial L-arabinose 1-dehydrogenase in complex with L-arabinose and NADP+
Biochem.Biophys.Res.Commun., 530, 2020

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