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PDB: 1470 件
3VRP
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BU of 3vrp by Molmil
Crystal structure of the tyrosine kinase binding domain of Cbl-c in complex with phospho-EGFR peptide
分子名称: CALCIUM ION, Epidermal growth factor receptor, Signal transduction protein CBL-C
著者Takeshita, K, Tezuka, T, Isozaki, Y, Yamashita, E, Suzuki, M, Yamanashi, Y, Yamamoto, T, Nakagawa, A.
登録日2012-04-13
公開日2013-03-06
実験手法X-RAY DIFFRACTION (1.52 Å)
主引用文献Structural flexibility regulates phosphopeptide-binding activity of the tyrosine kinase binding domain of Cbl-c.
J.Biochem., 152, 2012
3VRN
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BU of 3vrn by Molmil
Crystal structure of the tyrosine kinase binding domain of Cbl-c
分子名称: CALCIUM ION, Signal transduction protein CBL-C
著者Takeshita, K, Tezuka, T, Isozaki, Y, Yamashita, E, Suzuki, M, Yamanashi, Y, Yamamoto, T, Nakagawa, A.
登録日2012-04-13
公開日2013-03-06
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.64 Å)
主引用文献Structural flexibility regulates phosphopeptide-binding activity of the tyrosine kinase binding domain of Cbl-c
J.Biochem., 152, 2012
6L6K
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BU of 6l6k by Molmil
Crystal structure of dimeric RXRalpha-LBD complexed with partial agonist CBt-PMN and SRC1
分子名称: 1-(3,5,5,8,8-pentamethyl-6,7-dihydronaphthalen-2-yl)benzotriazole-5-carboxylic acid, CALCIUM ION, Nuclear receptor coactivator 1, ...
著者Shimizu, K, Numoto, N, Nakano, S, Makishima, M, Kakuta, H, Ito, N.
登録日2019-10-29
公開日2020-11-04
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Crystal structure of dimeric RXRalpha-LBD complexed with partial agonist CBt-PMN and SRC1
To Be Published
6LU2
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BU of 6lu2 by Molmil
Crystal structure of a substrate binding protein from Microbacterium hydrocarbonoxydans
分子名称: Substrate binding protein
著者Shimamura, K, Akiyama, T, Yokoyama, K, Takenoya, M, Ito, S, Sasaki, Y, Yajima, S.
登録日2020-01-25
公開日2020-03-25
最終更新日2020-04-22
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献Structural basis of substrate recognition by the substrate binding protein (SBP) of a hydrazide transporter, obtained from Microbacterium hydrocarbonoxydans.
Biochem.Biophys.Res.Commun., 525, 2020
6LU3
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BU of 6lu3 by Molmil
Crystal structure of a substrate binding protein from Microbacterium hydrocarbonoxydans complexed with 4-hydroxybenzoate hydrazide
分子名称: 4-oxidanylbenzohydrazide, Substrate binding protein
著者Shimamura, K, Akiyama, T, Yokoyama, K, Takenoya, M, Ito, S, Sasaki, Y, Yajima, S.
登録日2020-01-25
公開日2020-03-25
最終更新日2020-04-22
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Structural basis of substrate recognition by the substrate binding protein (SBP) of a hydrazide transporter, obtained from Microbacterium hydrocarbonoxydans.
Biochem.Biophys.Res.Commun., 525, 2020
3VVG
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BU of 3vvg by Molmil
The Crystal Structure of Cellulase-Inhibitor Complex.
分子名称: 3-(4-methoxy-3-methylphenyl)propanoic acid, 458aa long hypothetical endo-1,4-beta-glucanase, PHOSPHATE ION
著者Ishikawa, K, Maeno, Y, Kataoka, M.
登録日2012-07-24
公開日2013-08-28
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献The Crystal Structure of Cellulase-Inhibitor Complex.
TO BE PUBLISHED
1R41
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BU of 1r41 by Molmil
Crystal structures of d(Gm5CGm5CGCGC) and d(GCGCGm5CGm5C): Effects of methylation on alternating DNA octamers
分子名称: 5'-D(*GP*CP*GP*CP*GP*(5CM)P*GP*(5CM))-3'
著者Shi, K, Pan, B, Tippin, D, Sundaralingam, M.
登録日2003-10-03
公開日2003-12-23
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Structures of d(Gm5)CGm5CGCGC) and d(GCGCGm5CGm5C): effects of methylation on alternating DNA octamers.
Acta Crystallogr.,Sect.D, 60, 2004
1R3Z
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Crystal structures of d(Gm5CGm5CGCGC) and d(GCGCGm5CGm5C): Effects of methylation on alternating DNA octamers
分子名称: 5'-D(*GP*(5CM)P*GP*(5CM)P*GP*CP*GP*C)-3'
著者Shi, K, Pan, B, Tippin, D, Sundaralingam, M.
登録日2003-10-03
公開日2003-12-23
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Structures of d(Gm5)CGm5CGCGC) and d(GCGCGm5CGm5C): effects of methylation on alternating DNA octamers.
Acta Crystallogr.,Sect.D, 60, 2004
7DO7
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BU of 7do7 by Molmil
Crystal structure of Azotobacter vinelandii L-rhamnose 1-dehydrogenase(NAD and L-rhamnose bound-form)
分子名称: NICOTINAMIDE-ADENINE-DINUCLEOTIDE, Short-chain dehydrogenase/reductase SDR, beta-L-rhamnopyranose
著者Yoshiwara, K, Watanabe, Y, Watanabe, S.
登録日2020-12-12
公開日2021-02-03
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (1.57 Å)
主引用文献Crystal structure of l-rhamnose 1-dehydrogenase involved in the nonphosphorylative pathway of l-rhamnose metabolism in bacteria.
Febs Lett., 595, 2021
7VVL
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PTH-bound human PTH1R in complex with Gs (class2)
分子名称: Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1, Guanine nucleotide-binding protein G(s) subunit alpha isoforms short, ...
著者Kobayashi, K, Kusakizako, T, Miyauchi, H, Tomita, A, Kobayashi, K, Shihoya, W, Yamashita, K, Nishizawa, T, Kato, H.E, Nureki, O.
登録日2021-11-06
公開日2022-08-03
最終更新日2023-02-15
実験手法ELECTRON MICROSCOPY (2.8 Å)
主引用文献Endogenous ligand recognition and structural transition of a human PTH receptor.
Mol.Cell, 82, 2022
7VVN
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BU of 7vvn by Molmil
PTH-bound human PTH1R in complex with Gs (class4)
分子名称: Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1, Guanine nucleotide-binding protein G(s) subunit alpha isoforms short, ...
著者Kobayashi, K, Kusakizako, T, Miyauchi, H, Tomita, A, Kobayashi, K, Shihoya, W, Yamashita, K, Nishizawa, T, Kato, H.E, Nureki, O.
登録日2021-11-06
公開日2022-08-03
最終更新日2023-02-15
実験手法ELECTRON MICROSCOPY (3.8 Å)
主引用文献Endogenous ligand recognition and structural transition of a human PTH receptor.
Mol.Cell, 82, 2022
7VVK
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BU of 7vvk by Molmil
PTH-bound human PTH1R in complex with Gs (class1)
分子名称: Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1, Guanine nucleotide-binding protein G(s) subunit alpha isoforms short, ...
著者Kobayashi, K, Kusakizako, T, Miyauchi, H, Tomita, A, Kobayashi, K, Shihoya, W, Yamashita, K, Nishizawa, T, Kato, H.E, Nureki, O.
登録日2021-11-06
公開日2022-08-03
最終更新日2023-02-15
実験手法ELECTRON MICROSCOPY (3.3 Å)
主引用文献Endogenous ligand recognition and structural transition of a human PTH receptor.
Mol.Cell, 82, 2022
7VVM
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PTH-bound human PTH1R in complex with Gs (class3)
分子名称: Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1, Guanine nucleotide-binding protein G(s) subunit alpha isoforms short, ...
著者Kobayashi, K, Kusakizako, T, Miyauchi, H, Tomita, A, Kobayashi, K, Shihoya, W, Yamashita, K, Nishizawa, T, Kato, H.E, Nureki, O.
登録日2021-11-06
公開日2022-08-03
最終更新日2023-02-15
実験手法ELECTRON MICROSCOPY (3.2 Å)
主引用文献Endogenous ligand recognition and structural transition of a human PTH receptor.
Mol.Cell, 82, 2022
7VVJ
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BU of 7vvj by Molmil
PTHrP-bound human PTH1R in complex with Gs
分子名称: Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1, Guanine nucleotide-binding protein G(s) subunit alpha isoforms short, ...
著者Kobayashi, K, Kusakizako, T, Miyauchi, H, Tomita, A, Kobayashi, K, Shihoya, W, Yamashita, K, Nishizawa, T, Kato, H.E, Nureki, O.
登録日2021-11-06
公開日2022-08-03
最終更新日2023-02-15
実験手法ELECTRON MICROSCOPY (3.2 Å)
主引用文献Endogenous ligand recognition and structural transition of a human PTH receptor.
Mol.Cell, 82, 2022
7VVO
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BU of 7vvo by Molmil
PTH-bound human PTH1R in complex with Gs (class5)
分子名称: Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1, Guanine nucleotide-binding protein G(s) subunit alpha isoforms short, ...
著者Kobayashi, K, Kusakizako, T, Miyauchi, H, Tomita, A, Kobayashi, K, Shihoya, W, Yamashita, K, Nishizawa, T, Kato, H.E, Nureki, O.
登録日2021-11-06
公開日2022-08-03
最終更新日2023-02-15
実験手法ELECTRON MICROSCOPY (4.1 Å)
主引用文献Endogenous ligand recognition and structural transition of a human PTH receptor.
Mol.Cell, 82, 2022
5B4N
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BU of 5b4n by Molmil
Structure analysis of function associated loop mutant of substrate recognition domain of Fbs1 ubiquitin ligase
分子名称: F-box only protein 2
著者Nishio, K, Yoshida, Y, Tanaka, K, Mizushima, T.
登録日2016-04-06
公開日2016-09-14
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Structural analysis of a function-associated loop mutant of the substrate-recognition domain of Fbs1 ubiquitin ligase
Acta Crystallogr.,Sect.F, 72, 2016
4Y1P
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BU of 4y1p by Molmil
Crystal structure of 3-isopropylmalate dehydrogenase (Saci_0600) from Sulfolobus acidocaldarius complex with 3-isopropylmalate and Mg2+
分子名称: 3-ISOPROPYLMALIC ACID, 3-isopropylmalate dehydrogenase, MAGNESIUM ION, ...
著者Takahashi, K, Tomita, T, Kuzuyama, T, Nishiyama, M.
登録日2015-02-08
公開日2016-03-09
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Characterization of two beta-decarboxylating dehydrogenases from Sulfolobus acidocaldarius
Extremophiles, 20, 2016
2RQZ
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BU of 2rqz by Molmil
Structure of sugar modified epidermal growth factor-like repeat 12 of mouse Notch-1 receptor
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-3)-alpha-L-fucopyranose, Neurogenic locus notch homolog protein 1
著者Shimizu, K, Fujitani, N, Hosoguchi, K, Nishimura, S.
登録日2010-02-26
公開日2010-10-13
最終更新日2020-07-29
実験手法SOLUTION NMR
主引用文献Chemical Synthesis, Folding, and Structural Insights into O-Fucosylated Epidermal Growth Factor-like Repeat 12 of Mouse Notch-1 Receptor
J.Am.Chem.Soc., 132, 2010
7TBA
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BU of 7tba by Molmil
Pentraxin - ligand complex
分子名称: C-reactive protein, CALCIUM ION, [3-(dibutylamino)propyl]phosphonic acid
著者Shing, K.S.C.T, Morton, C.J, Parker, M.W.
登録日2021-12-21
公開日2022-10-19
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (3.5 Å)
主引用文献A novel phosphocholine-mimetic inhibits a pro-inflammatory conformational change in C-reactive protein.
Embo Mol Med, 15, 2023
2AXZ
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Crystal structure of PrgX/cCF10 complex
分子名称: LVTLVFV peptide, PrgX, TPPKEVT(MSE) peptide
著者Shi, K, Brown, C.K, Gu, Z.Y, Kozlowicz, B.K, Dunny, G.M, Ohlendorf, D.H, Earhart, C.A.
登録日2005-09-06
公開日2005-12-06
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Structure of peptide sex pheromone receptor PrgX and PrgX/pheromone complexes and regulation of conjugation in Enterococcus faecalis.
Proc.Natl.Acad.Sci.Usa, 102, 2005
2AXV
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Structure of PrgX Y153C mutant
分子名称: PrgX
著者Shi, K, Brown, C.K, Gu, Z.Y, Kozlowicz, B.K, Dunny, G.M, Ohlendorf, D.H, Earhart, C.A.
登録日2005-09-06
公開日2005-12-06
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Structure of peptide sex pheromone receptor PrgX and PrgX/pheromone complexes and regulation of conjugation in Enterococcus faecalis.
Proc.Natl.Acad.Sci.Usa, 102, 2005
6GF7
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BU of 6gf7 by Molmil
Molecular basis of egg coat filament cross-linking: Zn-SAD structure of the partially deglycosylated ZP1 ZP-N1 domain homodimer
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, ZINC ION, Zona pellucida sperm-binding protein 1,Zona pellucida sperm-binding protein 1
著者Nishimura, K, Jovine, L.
登録日2018-04-29
公開日2019-06-19
最終更新日2020-07-29
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Molecular basis of egg coat cross-linking sheds light on ZP1-associated female infertility.
Nat Commun, 10, 2019
6VGR
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Crystal Structure of Human Dipeptidase 3 in Complex with Fab of SC-003
分子名称: Dipeptidase 3, SC-003 Fab Heavy Chain, SC-003 Fab Light Chain
著者Hayashi, K, Longenecker, K.L, Vivona, S.
登録日2020-01-08
公開日2020-05-13
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (2.84 Å)
主引用文献Structure of human DPEP3 in complex with the SC-003 antibody Fab fragment reveals basis for lack of dipeptidase activity.
J.Struct.Biol., 211, 2020
4YB4
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BU of 4yb4 by Molmil
Crystal structure of homoisocitrate dehydrogenase from Thermus thermophilus in complex with homoisocitrate, magnesium ion (II) and NADH
分子名称: (1R,2S)-1-hydroxybutane-1,2,4-tricarboxylic acid, 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE, GLYCEROL, ...
著者Takahashi, K, Tomita, T, Kuzuyama, T, Nishiyama, M.
登録日2015-02-18
公開日2016-03-09
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Structure of homoisocitrate dehydrogenase from Thermus thermophilus in complex with homoisocitrate, magnesium(II) and NADH
To Be Published
7W9W
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BU of 7w9w by Molmil
2.02 angstrom cryo-EM structure of the pump-like channelrhodopsin ChRmine
分子名称: CHOLESTEROL, ChRmine, PALMITIC ACID, ...
著者Kishi, K.E, Kim, Y, Fukuda, M, Yamashita, K, Deisseroth, K, Kato, H.E.
登録日2021-12-11
公開日2022-02-02
最終更新日2022-03-09
実験手法ELECTRON MICROSCOPY (2 Å)
主引用文献Structural basis for channel conduction in the pump-like channelrhodopsin ChRmine.
Cell, 185, 2022

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