2ZHT
![Download](/newweb/media/icons/dl.png) ![Visualize](/newweb/media/icons/hoh_3d.png)
![BU of 2zht by Molmil](/molmil-images/mine/2zht) | Crystal structure of BACE1 at pH 4.5 | Descriptor: | Beta-secretase 1 | Authors: | Shimizu, H, Nukina, N. | Deposit date: | 2008-02-08 | Release date: | 2008-04-22 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (2.35 Å) | Cite: | Crystal structure of an active form of BACE1, an enzyme responsible for amyloid beta protein production Mol.Cell.Biol., 28, 2008
|
|
2BA3
![Download](/newweb/media/icons/dl.png) ![Visualize](/newweb/media/icons/hoh_3d.png)
![BU of 2ba3 by Molmil](/molmil-images/mine/2ba3) | NMR Structure of NikA N-terminal Fragment | Descriptor: | NikA | Authors: | Yoshida, H, Furuya, N, Lin, Y.J, Guntert, P, Komano, T, Kainosho, M. | Deposit date: | 2005-10-14 | Release date: | 2006-10-03 | Last modified: | 2024-05-29 | Method: | SOLUTION NMR | Cite: | NMR Structure of NikA N-teminal Fragment To be Published
|
|
2E2P
![Download](/newweb/media/icons/dl.png) ![Visualize](/newweb/media/icons/hoh_3d.png)
![BU of 2e2p by Molmil](/molmil-images/mine/2e2p) | Crystal structure of Sulfolobus tokodaii hexokinase in complex with ADP | Descriptor: | 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, ADENOSINE-5'-DIPHOSPHATE, HEXOKINASE, ... | Authors: | Nishimasu, H, Fushinobu, S, Shoun, H, Wakagi, T. | Deposit date: | 2006-11-15 | Release date: | 2007-01-16 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (2 Å) | Cite: | Crystal structures of an ATP-dependent hexokinase with broad substrate specificity from the hyperthermophilic archaeon Sulfolobus tokodaii. J.Biol.Chem., 282, 2007
|
|
2E2Q
![Download](/newweb/media/icons/dl.png) ![Visualize](/newweb/media/icons/hoh_3d.png)
![BU of 2e2q by Molmil](/molmil-images/mine/2e2q) | Crystal structure of Sulfolobus tokodaii hexokinase in complex with xylose, Mg2+, and ADP | Descriptor: | ADENOSINE-5'-DIPHOSPHATE, HEXOKINASE, MAGNESIUM ION, ... | Authors: | Nishimasu, H, Fushinobu, S, Shoun, H, Wakagi, T. | Deposit date: | 2006-11-15 | Release date: | 2007-01-16 | Last modified: | 2020-07-29 | Method: | X-RAY DIFFRACTION (2 Å) | Cite: | Crystal structures of an ATP-dependent hexokinase with broad substrate specificity from the hyperthermophilic archaeon Sulfolobus tokodaii. J.Biol.Chem., 282, 2007
|
|
2E2N
![Download](/newweb/media/icons/dl.png) ![Visualize](/newweb/media/icons/hoh_3d.png)
![BU of 2e2n by Molmil](/molmil-images/mine/2e2n) | Crystal structure of Sulfolobus tokodaii hexokinase in the apo form | Descriptor: | 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, HEXOKINASE, SULFATE ION | Authors: | Nishimasu, H, Fushinobu, S, Shoun, H, Wakagi, T. | Deposit date: | 2006-11-15 | Release date: | 2007-01-16 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (1.9 Å) | Cite: | Crystal structures of an ATP-dependent hexokinase with broad substrate specificity from the hyperthermophilic archaeon Sulfolobus tokodaii. J.Biol.Chem., 282, 2007
|
|
2Z5V
![Download](/newweb/media/icons/dl.png) ![Visualize](/newweb/media/icons/hoh_3d.png)
![BU of 2z5v by Molmil](/molmil-images/mine/2z5v) | Solution structure of the TIR domain of human MyD88 | Descriptor: | Myeloid differentiation primary response protein MyD88 | Authors: | Ohnishi, H, Tochio, H, Hiroaki, H, Kondo, N, Kato, Z, Shirakawa, M. | Deposit date: | 2007-07-19 | Release date: | 2008-08-05 | Last modified: | 2024-05-29 | Method: | SOLUTION NMR | Cite: | Structural basis for the multiple interactions of the MyD88 TIR domain in TLR4 signaling. Proc.Natl.Acad.Sci.USA, 2009
|
|
2E2O
![Download](/newweb/media/icons/dl.png) ![Visualize](/newweb/media/icons/hoh_3d.png)
![BU of 2e2o by Molmil](/molmil-images/mine/2e2o) | Crystal structure of Sulfolobus tokodaii hexokinase in complex with glucose | Descriptor: | HEXOKINASE, beta-D-glucopyranose | Authors: | Nishimasu, H, Fushinobu, S, Shoun, H, Wakagi, T. | Deposit date: | 2006-11-15 | Release date: | 2007-01-16 | Last modified: | 2020-07-29 | Method: | X-RAY DIFFRACTION (1.65 Å) | Cite: | Crystal structures of an ATP-dependent hexokinase with broad substrate specificity from the hyperthermophilic archaeon Sulfolobus tokodaii. J.Biol.Chem., 282, 2007
|
|
2DDD
![Download](/newweb/media/icons/dl.png) ![Visualize](/newweb/media/icons/hoh_3d.png)
![BU of 2ddd by Molmil](/molmil-images/mine/2ddd) | Unique behavior of a histidine responsible for an engineered green-to-red photoconversion process | Descriptor: | MAGNESIUM ION, SODIUM ION, photoconvertible fluorescent protein | Authors: | Shimizu, H, Tsutsui, H, Nukina, N, Miyawaki, A. | Deposit date: | 2006-01-27 | Release date: | 2006-03-07 | Last modified: | 2023-11-15 | Method: | X-RAY DIFFRACTION (1.55 Å) | Cite: | The E1 mechanism in photo-induced beta-elimination reactions for green-to-red conversion of fluorescent proteins Chem.Biol., 16, 2009
|
|
2DDC
![Download](/newweb/media/icons/dl.png) ![Visualize](/newweb/media/icons/hoh_3d.png)
![BU of 2ddc by Molmil](/molmil-images/mine/2ddc) | Unique behavior of a histidine responsible for an engineered green-to-red photoconversion process | Descriptor: | MAGNESIUM ION, SODIUM ION, photoconvertible fluorescent protein | Authors: | Shimizu, H, Tsutsui, H, Nukina, N, Miyawaki, A. | Deposit date: | 2006-01-27 | Release date: | 2006-03-07 | Last modified: | 2023-11-15 | Method: | X-RAY DIFFRACTION (1.55 Å) | Cite: | The E1 mechanism in photo-induced beta-elimination reactions for green-to-red conversion of fluorescent proteins. Chem.Biol., 16, 2009
|
|
2COV
![Download](/newweb/media/icons/dl.png) ![Visualize](/newweb/media/icons/hoh_3d.png)
![BU of 2cov by Molmil](/molmil-images/mine/2cov) | Crystal structure of CBM31 from beta-1,3-xylanase | Descriptor: | beta-1,3-xylanase | Authors: | Hashimoto, H, Tamai, Y, Okazaki, F, Tamaru, Y, Shimizu, T, Araki, T, Sato, M. | Deposit date: | 2005-05-18 | Release date: | 2005-09-13 | Last modified: | 2011-07-13 | Method: | X-RAY DIFFRACTION (1.25 Å) | Cite: | The first crystal structure of a family 31 carbohydrate-binding module with affinity to beta-1,3-xylan Febs Lett., 579, 2005
|
|
2CFM
![Download](/newweb/media/icons/dl.png) ![Visualize](/newweb/media/icons/hoh_3d.png)
![BU of 2cfm by Molmil](/molmil-images/mine/2cfm) | |
2ELG
![Download](/newweb/media/icons/dl.png) ![Visualize](/newweb/media/icons/hoh_3d.png)
![BU of 2elg by Molmil](/molmil-images/mine/2elg) | The rare crystallographic structure of d(CGCGCG)2: The natural spermidine molecule bound to the minor groove of left-handed Z-DNA d(CGCGCG)2 at 10 degree celsius | Descriptor: | DNA (5'-D(*DCP*DGP*DCP*DGP*DCP*DG)-3'), MAGNESIUM ION, SODIUM ION, ... | Authors: | Ohishi, H, Tozuka, Y, Zhou, D.Y, Ishida, T, Nakatani, K. | Deposit date: | 2007-03-27 | Release date: | 2008-04-01 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (1 Å) | Cite: | The rare crystallographic structure of d(CGCGCG)(2): The natural spermidine molecule bound to the minor groove of left-handed Z-DNA d(CGCGCG)(2) at 10 degrees C Biochem.Biophys.Res.Commun., 358, 2007
|
|
336D
![Download](/newweb/media/icons/dl.png) ![Visualize](/newweb/media/icons/hoh_3d.png)
![BU of 336d by Molmil](/molmil-images/mine/336d) | INTERACTION BETWEEN LEFT-HANDED Z-DNA AND POLYAMINE-3 THE CRYSTAL STRUCTURE OF THE D(CG)3 AND THERMOSPERMINE COMPLEX | Descriptor: | DNA (5'-D(*CP*GP*CP*GP*CP*G)-3'), MAGNESIUM ION, N-(3-AMINO-PROPYL)-N-(5-AMINOPROPYL)-1,4-DIAMINOBUTANE | Authors: | Ohishi, H, Terasoma, N, Nakanishi, I, Van Der Marel, G, Van Boom, J.H, Rich, A, Wang, A.H.-J, Hakoshima, T, Tomita, K.-I. | Deposit date: | 1997-06-24 | Release date: | 1998-04-10 | Last modified: | 2024-02-21 | Method: | X-RAY DIFFRACTION (1 Å) | Cite: | Interaction between left-handed Z-DNA and polyamine - 3. The crystal structure of the d(CG)3 and thermospermine complex. FEBS Lett., 398, 1996
|
|
3AX7
![Download](/newweb/media/icons/dl.png) ![Visualize](/newweb/media/icons/hoh_3d.png)
![BU of 3ax7 by Molmil](/molmil-images/mine/3ax7) | Bovine Xanthine Oxidase, protease cleaved form | Descriptor: | 2-HYDROXYBENZOIC ACID, BICARBONATE ION, CALCIUM ION, ... | Authors: | Ishikita, H, Eger, B.T, Pai, E.F, Okamoto, K, Nishino, T. | Deposit date: | 2011-03-30 | Release date: | 2012-02-22 | Last modified: | 2024-03-13 | Method: | X-RAY DIFFRACTION (2.34 Å) | Cite: | Protein conformational gating of enzymatic activity in xanthine oxidoreductase J.Am.Chem.Soc., 134, 2012
|
|
3AX9
![Download](/newweb/media/icons/dl.png) ![Visualize](/newweb/media/icons/hoh_3d.png)
![BU of 3ax9 by Molmil](/molmil-images/mine/3ax9) | Bovine xanthine oxidase, protease cleaved form | Descriptor: | 2-HYDROXYBENZOIC ACID, BICARBONATE ION, CALCIUM ION, ... | Authors: | Ishikita, H, Eger, B.T, Pai, E.F, Okamoto, K, Nishino, T. | Deposit date: | 2011-03-31 | Release date: | 2012-02-22 | Last modified: | 2024-03-13 | Method: | X-RAY DIFFRACTION (2.3 Å) | Cite: | Protein conformational gating of enzymatic activity in xanthine oxidoreductase J.Am.Chem.Soc., 134, 2012
|
|
3A2F
![Download](/newweb/media/icons/dl.png) ![Visualize](/newweb/media/icons/hoh_3d.png)
![BU of 3a2f by Molmil](/molmil-images/mine/3a2f) | |
2EX2
![Download](/newweb/media/icons/dl.png) ![Visualize](/newweb/media/icons/hoh_3d.png)
![BU of 2ex2 by Molmil](/molmil-images/mine/2ex2) | Crystal structure of penicillin binding protein 4 (dacB) from Escherichia coli | Descriptor: | GLYCEROL, Penicillin-binding protein 4 | Authors: | Kishida, H, Unzai, S, Roper, D.I, Lloyd, A, Park, S.-Y, Tame, J.R.H. | Deposit date: | 2005-11-07 | Release date: | 2006-06-13 | Last modified: | 2016-10-19 | Method: | X-RAY DIFFRACTION (1.55 Å) | Cite: | Crystal structure of penicillin binding protein 4 (dacB) from Escherichia coli, both in the native form and covalently linked to various antibiotics Biochemistry, 45, 2006
|
|
2EXA
![Download](/newweb/media/icons/dl.png) ![Visualize](/newweb/media/icons/hoh_3d.png)
![BU of 2exa by Molmil](/molmil-images/mine/2exa) | Crystal structure of penicillin binding protein 4 (dacB) from Escherichia coli, complexed with FAROM | Descriptor: | (2R,5R)-2-[(2S,3R)-3-hydroxy-1-oxobutan-2-yl]-5-[(2R)-tetrahydrofuran-2-yl]-2,5-dihydro-1,3-thiazole-4-carboxylic acid, GLYCEROL, Penicillin-binding protein 4 | Authors: | Kishida, H, Unzai, S, Roper, D.I, Lloyd, A, Park, S.-Y, Tame, J.R.H. | Deposit date: | 2005-11-08 | Release date: | 2006-06-13 | Last modified: | 2016-10-19 | Method: | X-RAY DIFFRACTION (1.7 Å) | Cite: | Crystal structure of penicillin binding protein 4 (dacB) from Escherichia coli, both in the native form and covalently linked to various antibiotics Biochemistry, 45, 2006
|
|
2EX8
![Download](/newweb/media/icons/dl.png) ![Visualize](/newweb/media/icons/hoh_3d.png)
![BU of 2ex8 by Molmil](/molmil-images/mine/2ex8) | Crystal structure of penicillin binding protein 4 (dacB) from Escherichia coli, complexed with penicillin-G | Descriptor: | OPEN FORM - PENICILLIN G, Penicillin-binding protein 4 | Authors: | Kishida, H, Unzai, S, Roper, D.I, Lloyd, A, Park, S.-Y, Tame, J.R.H. | Deposit date: | 2005-11-08 | Release date: | 2006-06-13 | Last modified: | 2016-10-19 | Method: | X-RAY DIFFRACTION (1.6 Å) | Cite: | Crystal structure of penicillin binding protein 4 (dacB) from Escherichia coli, both in the native form and covalently linked to various antibiotics Biochemistry, 45, 2006
|
|
2EXB
![Download](/newweb/media/icons/dl.png) ![Visualize](/newweb/media/icons/hoh_3d.png)
![BU of 2exb by Molmil](/molmil-images/mine/2exb) | Crystal structure of penicillin binding protein 4 (dacB) from Escherichia coli, complexed with FLOMOX | Descriptor: | 2,2-dimethylpropanoyloxymethyl (2R)-5-(aminocarbonyloxymethyl)-2-[(1R)-1-[[(Z)-2-(2-azanyl-1,3-thiazol-4-yl)pent-2-enoyl]amino]-2-oxidanylidene-ethyl]-3,6-dihydro-2H-1,3-thiazine-4-carboxylate, GLYCEROL, Penicillin-binding protein 4 | Authors: | Kishida, H, Unzai, S, Roper, D.I, Lloyd, A, Park, S.-Y, Tame, J.R.H. | Deposit date: | 2005-11-08 | Release date: | 2006-06-13 | Last modified: | 2016-10-19 | Method: | X-RAY DIFFRACTION (1.75 Å) | Cite: | Crystal structure of penicillin binding protein 4 (dacB) from Escherichia coli, both in the native form and covalently linked to various antibiotics Biochemistry, 45, 2006
|
|
2EX9
![Download](/newweb/media/icons/dl.png) ![Visualize](/newweb/media/icons/hoh_3d.png)
![BU of 2ex9 by Molmil](/molmil-images/mine/2ex9) | Crystal structure of penicillin binding protein 4 (dacB) from Escherichia coli, complexed with penicillin-V | Descriptor: | (2R,4S)-5,5-dimethyl-2-{(1R)-2-oxo-1-[(phenoxyacetyl)amino]ethyl}-1,3-thiazolidine-4-carboxylic acid, GLYCEROL, Penicillin-binding protein 4 | Authors: | Kishida, H, Unzai, S, Roper, D.I, Lloyd, A, Park, S.-Y, Tame, J.R.H. | Deposit date: | 2005-11-08 | Release date: | 2006-06-13 | Last modified: | 2016-10-19 | Method: | X-RAY DIFFRACTION (1.65 Å) | Cite: | Crystal structure of penicillin binding protein 4 (dacB) from Escherichia coli, both in the native form and covalently linked to various antibiotics Biochemistry, 45, 2006
|
|
2EX6
![Download](/newweb/media/icons/dl.png) ![Visualize](/newweb/media/icons/hoh_3d.png)
![BU of 2ex6 by Molmil](/molmil-images/mine/2ex6) | Crystal structure of penicillin binding protein 4 (dacB) from Escherichia coli, complexed with ampicillin | Descriptor: | (2R,4S)-2-[(1R)-1-{[(2R)-2-amino-2-phenylacetyl]amino}-2-oxoethyl]-5,5-dimethyl-1,3-thiazolidine-4-carboxylic acid, GLYCEROL, Penicillin-binding protein 4 | Authors: | Kishida, H, Unzai, S, Roper, D.I, Lloyd, A, Park, S.-Y, Tame, J.R.H. | Deposit date: | 2005-11-08 | Release date: | 2006-06-13 | Last modified: | 2016-10-19 | Method: | X-RAY DIFFRACTION (1.6 Å) | Cite: | Crystal structure of penicillin binding protein 4 (dacB) from Escherichia coli, both in the native form and covalently linked to various antibiotics Biochemistry, 45, 2006
|
|
3A4Y
![Download](/newweb/media/icons/dl.png) ![Visualize](/newweb/media/icons/hoh_3d.png)
![BU of 3a4y by Molmil](/molmil-images/mine/3a4y) | Crystal Structure of H61A mutant TTHA0252 from Thermus thermophilus HB8 | Descriptor: | CITRATE ANION, Ribonuclease TTHA0252, SULFATE ION, ... | Authors: | Ishikawa, H, Nakagawa, N, Kuramitsu, S, Yokoyama, S, Masui, R, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | Deposit date: | 2009-07-22 | Release date: | 2009-08-04 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (2.5 Å) | Cite: | Crystal Structure of H61A mutant TTHA0252 from Thermus thermophilus HB8 to be published
|
|
5UZF
![Download](/newweb/media/icons/dl.png) ![Visualize](/newweb/media/icons/hoh_3d.png)
![BU of 5uzf by Molmil](/molmil-images/mine/5uzf) | Insights into Watson-Crick/Hoogsteen Breathing Dynamics and Damage Repair from the Solution Structure and Dynamic Ensemble of DNA Duplexes containing m1A - A6-DNA structure | Descriptor: | DNA (5'-D(*CP*GP*AP*TP*TP*TP*TP*TP*TP*GP*GP*C)-3'), DNA (5'-D(*GP*CP*CP*AP*AP*AP*AP*AP*AP*TP*CP*G)-3') | Authors: | Sathyamoorthy, B, Shi, H, Xue, Y, Al-Hashimi, H.M. | Deposit date: | 2017-02-26 | Release date: | 2017-04-05 | Last modified: | 2024-05-15 | Method: | SOLUTION NMR | Cite: | Insights into Watson-Crick/Hoogsteen breathing dynamics and damage repair from the solution structure and dynamic ensemble of DNA duplexes containing m1A. Nucleic Acids Res., 45, 2017
|
|
5UZD
![Download](/newweb/media/icons/dl.png) ![Visualize](/newweb/media/icons/hoh_3d.png)
![BU of 5uzd by Molmil](/molmil-images/mine/5uzd) | Insights into Watson-Crick/Hoogsteen Breathing Dynamics and Damage Repair from the Solution Structure and Dynamic Ensemble of DNA Duplexes containing m1A - A2-DNA structure | Descriptor: | DNA (5'-D(*GP*CP*AP*TP*CP*GP*AP*TP*TP*GP*GP*C)-3'), DNA (5'-D(*GP*CP*CP*AP*AP*TP*CP*GP*AP*TP*GP*C)-3') | Authors: | Sathyamoorthy, B, Shi, H, Xue, Y, Al-Hashimi, H.M. | Deposit date: | 2017-02-26 | Release date: | 2017-04-05 | Last modified: | 2024-05-15 | Method: | SOLUTION NMR | Cite: | Insights into Watson-Crick/Hoogsteen breathing dynamics and damage repair from the solution structure and dynamic ensemble of DNA duplexes containing m1A. Nucleic Acids Res., 45, 2017
|
|