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PDB: 1328 results

9C4C
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BU of 9c4c by Molmil
The structure of two MntR dimers bound to the native mnep promoter sequence
Descriptor: DNA (38-MER), DNA (39-MER), HTH-type transcriptional regulator MntR, ...
Authors:Shi, H, Fu, Y, Glasfeld, A, Ahuja, S.
Deposit date:2024-06-04
Release date:2024-08-14
Method:ELECTRON MICROSCOPY (3.09 Å)
Cite:The structure of two MntR dimers bound to the native mnep promoter sequence.
To Be Published
9C4D
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BU of 9c4d by Molmil
The structure of 4 MntR homodimers bound to the promoter sequence of mnep
Descriptor: DNA (77-MER), HTH-type transcriptional regulator MntR, MANGANESE (II) ION
Authors:Shi, H, Fu, Y, Glasfeld, A, Ahuja, S.
Deposit date:2024-06-04
Release date:2024-08-14
Method:ELECTRON MICROSCOPY (4.17 Å)
Cite:The structure of 4 MntR homodimers bound to the promoter sequence of mnep.
To Be Published
8BQN
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BU of 8bqn by Molmil
Structure of empty Coxsackievirus A10 embedded in crystalline ice frozen at -140 degree
Descriptor: Capsid protein VP1, Capsid protein VP2, Capsid protein VP3
Authors:Shi, H, Wu, C, Zhang, X.
Deposit date:2022-11-21
Release date:2023-01-11
Last modified:2024-07-24
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Addressing compressive deformation of proteins embedded in crystalline ice.
Structure, 31, 2023
8F49
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BU of 8f49 by Molmil
1.8 angstrom structure of apoferritin embedded in crystalline ice
Descriptor: Ferritin heavy chain
Authors:Shi, H, Wu, C, Zhang, X.
Deposit date:2022-11-10
Release date:2023-01-11
Last modified:2024-06-19
Method:ELECTRON MICROSCOPY (1.8 Å)
Cite:Addressing compressive deformation of proteins embedded in crystalline ice.
Structure, 31, 2023
8F4L
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BU of 8f4l by Molmil
Structure of human apoferritin embedded in crystalline ice
Descriptor: Ferritin heavy chain
Authors:Shi, H, Wu, C, Zhang, X.
Deposit date:2022-11-11
Release date:2024-06-19
Method:ELECTRON MICROSCOPY (2.4 Å)
Cite:Addressing Compressive Deformation of Proteins Embedded in Crystalline Ice
To Be Published
8EW2
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BU of 8ew2 by Molmil
Cryo-EM structure of Aldolase embedded in crystalline ice
Descriptor: Fructose-bisphosphate aldolase A
Authors:Shi, H, Wu, C, Zhang, X.
Deposit date:2022-10-21
Release date:2023-01-11
Last modified:2024-06-19
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Addressing compressive deformation of proteins embedded in crystalline ice.
Structure, 31, 2023
8EW0
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BU of 8ew0 by Molmil
Cryo-EM structure of glutamate dehydrogenase frozen at various temperature
Descriptor: Glutamate dehydrogenase 1, mitochondrial
Authors:Shi, H, Wu, C, Zhang, X.
Deposit date:2022-10-21
Release date:2023-01-11
Last modified:2024-06-19
Method:ELECTRON MICROSCOPY (2.7 Å)
Cite:Addressing compressive deformation of proteins embedded in crystalline ice.
Structure, 31, 2023
8F7Y
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BU of 8f7y by Molmil
Structure of Coxsackievirus A10 frozen at -183 degree embedded in crystalline ice
Descriptor: Genome polyprotein
Authors:Shi, H, Wu, C, Zhang, X.
Deposit date:2022-11-21
Release date:2023-01-11
Last modified:2024-06-19
Method:ELECTRON MICROSCOPY (2.8 Å)
Cite:Addressing compressive deformation of proteins embedded in crystalline ice.
Structure, 31, 2023
5UBV
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BU of 5ubv by Molmil
ATPase domain of i-AAA protease from Myceliophthora thermophila
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ATPase domain of i-AAA protease, CITRIC ACID, ...
Authors:Shi, H, Glynn, S.E.
Deposit date:2016-12-21
Release date:2017-12-27
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.45 Å)
Cite:Structure of the ATPase domain of i-AAA protease from Myceliophthora thermophila
To Be Published
4LL7
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BU of 4ll7 by Molmil
Structure of She3p amino terminus.
Descriptor: 1,2-ETHANEDIOL, 2,3-DIHYDROXY-1,4-DITHIOBUTANE, DYSPROSIUM ION, ...
Authors:Shi, H, Singh, N, Esselborn, F, Blobel, G.
Deposit date:2013-07-09
Release date:2014-02-12
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.31 Å)
Cite:Structure of a myosinbulletadaptor complex and pairing by cargo.
Proc.Natl.Acad.Sci.USA, 111, 2014
7JU1
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BU of 7ju1 by Molmil
The FARFAR-NMR Ensemble of 29-mer HIV-1 Trans-activation Response Element RNA (N=20)
Descriptor: RNA (29-MER)
Authors:Shi, H, Rangadurai, A, Roy, R, Yesselman, J.D, Al-Hashimi, H.M.
Deposit date:2020-08-18
Release date:2020-10-07
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Rapid and accurate determination of atomistic RNA dynamic ensemble models using NMR and structure prediction
Nat Commun, 11, 2020
8HHS
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BU of 8hhs by Molmil
Structure of human apoferritin embedded in crystalline ice
Descriptor: Ferritin heavy chain
Authors:Shi, H, Wu, C, Zhang, X.
Deposit date:2022-11-17
Release date:2023-02-15
Last modified:2024-07-03
Method:ELECTRON MICROSCOPY (2.4 Å)
Cite:Addressing compressive deformation of proteins embedded in crystalline ice.
Structure, 31, 2023
4LL6
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BU of 4ll6 by Molmil
Structure of Myo4p globular tail domain.
Descriptor: ACETIC ACID, Myosin-4
Authors:Shi, H, Singh, N, Esselborn, F, Blobel, G.
Deposit date:2013-07-09
Release date:2014-02-12
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structure of a myosinbulletadaptor complex and pairing by cargo.
Proc.Natl.Acad.Sci.USA, 111, 2014
4LL8
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BU of 4ll8 by Molmil
Complex of carboxy terminal domain of Myo4p and She3p middle fragment
Descriptor: Myosin-4, SWI5-dependent HO expression protein 3
Authors:Shi, H, Singh, N, Esselborn, F, Blobel, G.
Deposit date:2013-07-09
Release date:2014-02-12
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (3.578 Å)
Cite:Structure of a myosinbulletadaptor complex and pairing by cargo.
Proc.Natl.Acad.Sci.USA, 111, 2014
3OPB
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BU of 3opb by Molmil
Crystal structure of She4p
Descriptor: SWI5-dependent HO expression protein 4
Authors:Shi, H, Blobel, G.
Deposit date:2010-08-31
Release date:2010-12-01
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:UNC-45/CRO1/She4p (UCS) protein forms elongated dimer and joins two myosin heads near their actin binding region.
Proc.Natl.Acad.Sci.USA, 107, 2010
8HI2
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BU of 8hi2 by Molmil
Structure of EV71 VLP frozen at -183 degree embedded in crystalline ice
Descriptor: Genome polyprotein, Genome polyprotein (Fragment)
Authors:Shi, H, Wu, C, Zhang, X.
Deposit date:2022-11-18
Release date:2023-02-01
Last modified:2024-07-03
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Addressing compressive deformation of proteins embedded in crystalline ice.
Structure, 31, 2023
1OO0
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BU of 1oo0 by Molmil
Crystal structure of the Drosophila Mago nashi-Y14 complex
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, BETA-MERCAPTOETHANOL, CG8781-PA, ...
Authors:Shi, H, Xu, R.M.
Deposit date:2003-03-02
Release date:2003-05-27
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Crystal structure of the Drosophila Mago nashi-Y14 complex
Genes Dev., 17, 2003
1EHZ
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BU of 1ehz by Molmil
The crystal structure of yeast phenylalanine tRNA at 1.93 A resolution
Descriptor: MAGNESIUM ION, MANGANESE (II) ION, TRANSFER RNA (PHE)
Authors:Shi, H, Moore, P.B.
Deposit date:2000-02-23
Release date:2000-10-02
Last modified:2022-12-21
Method:X-RAY DIFFRACTION (1.93 Å)
Cite:The crystal structure of yeast phenylalanine tRNA at 1.93 A resolution: a classic structure revisited
RNA, 6, 2000
292D
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BU of 292d by Molmil
INTERACTION BETWEEN THE LEFT-HANDED Z-DNA AND POLYAMINE:THE CRYSTAL STRUCTURE OF THE D(CG)3 AND N-(2-AMINOETHYL)-1,4-DIAMINOBUTANE COMPLEX
Descriptor: 1-(AMINOETHYL)AMINO-4-AMINOBUTANE, DNA (5'-D(*CP*GP*CP*GP*CP*G)-3'), MAGNESIUM ION, ...
Authors:Ohishi, H, Kunisawa, S, Van Der Marel, G, Van Boom, J.H, Rich, A, Wang, A.H.-J, Tomita, K, Hakoshima, T.
Deposit date:1991-10-09
Release date:1996-12-02
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1 Å)
Cite:Interaction between the left-handed Z-DNA and polyamine. The crystal structure of the d(CG)3 and N-(2-aminoethyl)-1,4-diamino-butane complex.
FEBS Lett., 284, 1991
1HNR
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BU of 1hnr by Molmil
H-NS (DNA-BINDING DOMAIN)
Descriptor: H-NS
Authors:Shindo, H, Iwaki, T, Ieda, R, Kurumizaka, H, Ueguchi, C, Mizuno, T, Morikawa, S, Nakamura, H, Kuboniwa, H.
Deposit date:1995-04-06
Release date:1995-07-10
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Solution structure of the DNA binding domain of a nucleoid-associated protein, H-NS, from Escherichia coli.
FEBS Lett., 360, 1995
1HNS
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BU of 1hns by Molmil
H-NS (DNA-BINDING DOMAIN)
Descriptor: H-NS
Authors:Shindo, H, Iwaki, T, Ieda, R, Kurumizaka, H, Ueguchi, C, Mizuno, T, Morikawa, S, Nakamura, H, Kuboniwa, H.
Deposit date:1995-04-06
Release date:1995-07-10
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Solution structure of the DNA binding domain of a nucleoid-associated protein, H-NS, from Escherichia coli.
FEBS Lett., 360, 1995
3W08
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BU of 3w08 by Molmil
Crystal structure of aldoxime dehydratase
Descriptor: Aldoxime dehydratase, PROTOPORPHYRIN IX CONTAINING FE
Authors:Hashimoto, H, Nomura, J, Hashimoto, Y, Oinuma, K.I, Wada, K, Hishiki, A, Hara, K, Kobayashi, M.
Deposit date:2012-10-24
Release date:2013-02-20
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of aldoxime dehydratase and its catalytic mechanism involved in carbon-nitrogen triple-bond synthesis.
Proc.Natl.Acad.Sci.USA, 110, 2013
6LGP
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BU of 6lgp by Molmil
cryo-EM structure of TRPV3 in lipid nanodisc
Descriptor: (2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate, DIUNDECYL PHOSPHATIDYL CHOLINE, Transient receptor potential cation channel subfamily V member 3
Authors:Shimada, H, Kusakizako, T, Nishizawa, T, Nureki, O.
Deposit date:2019-12-05
Release date:2020-06-24
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:The structure of lipid nanodisc-reconstituted TRPV3 reveals the gating mechanism.
Nat.Struct.Mol.Biol., 27, 2020
4XSM
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BU of 4xsm by Molmil
Crystal structure of D-tagatose 3-epimerase C66S from Pseudomonas cichorii in complex with D-talitol
Descriptor: D-altritol, D-tagatose 3-epimerase, MANGANESE (II) ION
Authors:Yoshida, H, Yoshihara, A, Ishii, T, Izumori, K, Kamitori, S.
Deposit date:2015-01-22
Release date:2016-01-27
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:X-ray structures of the Pseudomonas cichorii D-tagatose 3-epimerase mutant form C66S recognizing deoxy sugars as substrates
Appl. Microbiol. Biotechnol., 100, 2016
4XSL
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BU of 4xsl by Molmil
Crystal strcutre of D-tagatose 3-epimerase C66S from Pseudomonas cichorii in complex with glycerol
Descriptor: D-tagatose 3-epimerase, GLYCEROL, MANGANESE (II) ION
Authors:Yoshida, H, Yoshihara, A, Ishii, T, Izumori, K, Kamitori, S.
Deposit date:2015-01-22
Release date:2016-01-27
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:X-ray structures of the Pseudomonas cichorii D-tagatose 3-epimerase mutant form C66S recognizing deoxy sugars as substrates
Appl. Microbiol. Biotechnol., 100, 2016

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