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PDB: 239 results
8CSJ
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BU of 8csj by Molmil
Cryo-EM structure of NTD-directed non-neutralizing antibody 4-33 in complex with prefusion SARS-CoV-2 spike glycoprotein
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(2-3)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Reddem, E.R, Shapiro, L.
Deposit date:2022-05-12
Release date:2023-05-17
Method:ELECTRON MICROSCOPY (3.53 Å)
Cite:Cryo-EM structure of NTD-directed non-neutralizing antibody 4-33 in complex with prefusion SARS-CoV-2 spike glycoprotein
To Be Published
8DUL
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BU of 8dul by Molmil
Cryo-EM Structure of Antibody SKT05 in complex with Western Equine Encephalitis Virus spike (local refinement from VLP particles)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Antibody Fab SKT05 heavy chain, ...
Authors:Cerutti, G, Verardi, R, Roederer, M, Shapiro, L.
Deposit date:2022-07-27
Release date:2023-07-05
Method:ELECTRON MICROSCOPY (4.17 Å)
Cite:Vaccine elicitation and structural basis for antibody protection against alphaviruses.
Cell, 186, 2023
8DUN
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BU of 8dun by Molmil
Cryo-EM Structure of Antibody SKW11 in complex with Western Equine Encephalitis Virus spike (local refinement from VLP particles)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Antibody SKW11 heavy chain, ...
Authors:Cerutti, G, Verardi, R, Roederer, M, Shapiro, L.
Deposit date:2022-07-27
Release date:2023-07-05
Method:ELECTRON MICROSCOPY (5.84 Å)
Cite:Vaccine elicitation and structural basis for antibody protection against alphaviruses.
Cell, 186, 2023
4YME
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BU of 4yme by Molmil
Crystal structure of a sensory box/GGDEF family protein (CC_0091) from Caulobacter crescentus CB15 at 1.40 A resolution (PSI Community Target, Shapiro)
Descriptor: sensory box/GGDEF family protein
Authors:Joint Center for Structural Genomics (JCSG), Shapiro, L.
Deposit date:2015-03-06
Release date:2015-04-01
Last modified:2023-02-01
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Crystal structure of a sensory box/GGDEF family protein (CC_0091) from Caulobacter crescentus CB15 at 1.40 A resolution (PSI Community Target, Shapiro)
To be published
7UKM
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BU of 7ukm by Molmil
Cryo-EM structure of Antibody 12-19 in complex with prefusion SARS-CoV-2 Spike glycoprotein
Descriptor: 12-19 Fab Heavy Chain, 12-19 Fab Light Chain, 2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Casner, R.G, Shapiro, L.
Deposit date:2022-04-01
Release date:2023-10-04
Method:ELECTRON MICROSCOPY (3.03 Å)
Cite:Structure and Neutralization of two quaternary SARS-CoV-2 omicron antibodies
To Be Published
3LNF
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BU of 3lnf by Molmil
Crystal structure of E-cadherin EC12 K14EW2A
Descriptor: CALCIUM ION, Cadherin-1
Authors:Jin, X, Harrison, O, Shapiro, L.
Deposit date:2010-02-02
Release date:2010-03-02
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Two-step adhesive binding by classical cadherins.
Nat.Struct.Mol.Biol., 17, 2010
3LNI
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BU of 3lni by Molmil
Crystal structure of E-cadherin EC12 E89A
Descriptor: CALCIUM ION, Cadherin-1
Authors:Harrison, O, Jin, X, Shapiro, L.
Deposit date:2010-02-02
Release date:2010-03-02
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Two-step adhesive binding by classical cadherins.
Nat.Struct.Mol.Biol., 17, 2010
3LNH
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BU of 3lnh by Molmil
Crystal structure of E-cadherin EC12 W2A
Descriptor: CALCIUM ION, Cadherin-1
Authors:Harrison, O, Jin, X, Shapiro, L.
Deposit date:2010-02-02
Release date:2010-03-02
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Two-step adhesive binding by classical cadherins.
Nat.Struct.Mol.Biol., 17, 2010
3LNG
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BU of 3lng by Molmil
Crystal structure of E-cadherin EC12 AA extension
Descriptor: CALCIUM ION, Cadherin-1
Authors:Harrison, O, Jin, X, Shapiro, L.
Deposit date:2010-02-02
Release date:2010-03-02
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Two-step adhesive binding by classical cadherins.
Nat.Struct.Mol.Biol., 17, 2010
3MW2
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BU of 3mw2 by Molmil
Crystal structure of beta-neurexin 1 with the splice insert 4
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[beta-D-mannopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, Neurexin-1-alpha, PHOSPHATE ION
Authors:Jin, X, Shapiro, L.
Deposit date:2010-05-05
Release date:2010-07-28
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.69 Å)
Cite:Splice Form Dependence of beta-Neurexin/Neuroligin Binding Interactions.
Neuron, 67, 2010
3MW4
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BU of 3mw4 by Molmil
Crystal structure of beta-neurexin 3 without the splice insert 4
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[beta-D-mannopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, Neurexin-2-beta, ...
Authors:Jin, X, Shapiro, L.
Deposit date:2010-05-05
Release date:2010-07-28
Last modified:2021-10-06
Method:X-RAY DIFFRACTION (2 Å)
Cite:Splice Form Dependence of beta-Neurexin/Neuroligin Binding Interactions.
Neuron, 67, 2010
3MW3
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BU of 3mw3 by Molmil
Crystal structure of beta-neurexin 2 with the splice insert 4
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[beta-D-mannopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, Neurexin-2-beta
Authors:Jin, X, Shapiro, L.
Deposit date:2010-05-05
Release date:2010-07-28
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.33 Å)
Cite:Splice Form Dependence of beta-Neurexin/Neuroligin Binding Interactions.
Neuron, 67, 2010
4NQQ
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BU of 4nqq by Molmil
Crystal structure of mouse P-cadherin extracellular domains EC1-EC2
Descriptor: CALCIUM ION, COPPER (II) ION, Cadherin-3
Authors:Brasch, J, Shapiro, L.
Deposit date:2013-11-25
Release date:2014-09-24
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Structural and energetic determinants of adhesive binding specificity in type I cadherins.
Proc.Natl.Acad.Sci.USA, 111, 2014
3LND
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BU of 3lnd by Molmil
Crystal structure of cadherin-6 EC12 W4A
Descriptor: CALCIUM ION, Cdh6 protein
Authors:Jin, X, Harrison, O, Shapiro, L.
Deposit date:2010-02-02
Release date:2010-03-02
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.82 Å)
Cite:Two-step adhesive binding by classical cadherins.
Nat.Struct.Mol.Biol., 17, 2010
1C8Z
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BU of 1c8z by Molmil
C-TERMINAL DOMAIN OF MOUSE BRAIN TUBBY PROTEIN
Descriptor: PHOSPHATE ION, TUBBY PROTEIN
Authors:Boggon, T.J, Myers, S.C, Shapiro, L.
Deposit date:1999-07-30
Release date:1999-12-12
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Implication of tubby proteins as transcription factors by structure-based functional analysis.
Science, 286, 1999
4ZPP
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BU of 4zpp by Molmil
Crystal Structure of Protocadherin Gamma C5 EC1-3
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, MCG133388, ...
Authors:Wolcott, H.N, Goodman, K.M, Bahna, F, Mannepalli, S, Shapiro, L.
Deposit date:2015-05-08
Release date:2015-10-28
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (3.002 Å)
Cite:Molecular Logic of Neuronal Self-Recognition through Protocadherin Domain Interactions.
Cell, 163, 2015
4ZPO
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BU of 4zpo by Molmil
Crystal Structure of Protocadherin Gamma C5 EC1-3
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, CALCIUM ION, MCG133388, ...
Authors:Wolcott, H.N, Goodman, K.M, Bahna, F, Mannepalli, S, Rubinstein, R, Honig, B, Shapiro, L.
Deposit date:2015-05-08
Release date:2015-10-28
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Molecular Logic of Neuronal Self-Recognition through Protocadherin Domain Interactions.
Cell, 163, 2015
4ZPL
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BU of 4zpl by Molmil
Crystal Structure of Protocadherin Beta 1 EC1-3
Descriptor: CALCIUM ION, Protein Pcdhb1, beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose
Authors:Goodman, K.M, Bahna, F, Shapiro, L.
Deposit date:2015-05-08
Release date:2015-10-28
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Molecular Logic of Neuronal Self-Recognition through Protocadherin Domain Interactions.
Cell, 163, 2015
4ZPQ
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BU of 4zpq by Molmil
Crystal Structure of Protocadherin Gamma C5 EC1-3
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, MCG133388, ...
Authors:Wolcott, H.N, Goodman, K.M, Bahna, F, Mannepalli, S, Shapiro, L.
Deposit date:2015-05-08
Release date:2015-10-28
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (3.099 Å)
Cite:Molecular Logic of Neuronal Self-Recognition through Protocadherin Domain Interactions.
Cell, 163, 2015
4ZPM
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BU of 4zpm by Molmil
Crystal Structure of Protocadherin Alpha C2 EC1-3
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, Protein Pcdhac2, ...
Authors:Goodman, K.M, Mannepalli, S, Shapiro, L.
Deposit date:2015-05-08
Release date:2015-10-28
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Molecular Logic of Neuronal Self-Recognition through Protocadherin Domain Interactions.
Cell, 163, 2015
2IJR
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BU of 2ijr by Molmil
Crystal structure of a protein api92 from Yersinia pseudotuberculosis, Pfam DUF1281
Descriptor: Hypothetical protein api92
Authors:Jin, X, Min, T, Bonanno, J.B, Sauder, J.M, Wasserman, S, Smith, D, Burley, S.K, Shapiro, L, New York SGX Research Center for Structural Genomics (NYSGXRC)
Deposit date:2006-09-30
Release date:2006-10-31
Last modified:2021-02-03
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Crystal structure of a hypothetical protein from Yersinia pseudotuberculosis
To be Published
4ZPS
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BU of 4zps by Molmil
Crystal Structure of Protocadherin Gamma A8 EC1-3
Descriptor: CALCIUM ION, MCG133388, isoform CRA_m, ...
Authors:Goodman, K.M, Mannepalli, S, Shapiro, L.
Deposit date:2015-05-08
Release date:2015-10-28
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Molecular Logic of Neuronal Self-Recognition through Protocadherin Domain Interactions.
Cell, 163, 2015
4ZPN
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BU of 4zpn by Molmil
Crystal Structure of Protocadherin Gamma C5 EC1-3 with extended N-terminus
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, MCG133388, ...
Authors:Goodman, K.M, Wolcott, H.N, Bahna, F, Shapiro, L.
Deposit date:2015-05-08
Release date:2015-10-28
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Molecular Logic of Neuronal Self-Recognition through Protocadherin Domain Interactions.
Cell, 163, 2015
1NCJ
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BU of 1ncj by Molmil
N-CADHERIN, TWO-DOMAIN FRAGMENT
Descriptor: CALCIUM ION, PROTEIN (N-CADHERIN), URANYL (VI) ION
Authors:Tamura, K, Shan, W.-S, Hendrickson, W.A, Colman, D.R, Shapiro, L.
Deposit date:1999-02-02
Release date:1999-03-18
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (3.4 Å)
Cite:Structure-function analysis of cell adhesion by neural (N-) cadherin.
Neuron, 20, 1998
1NE8
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BU of 1ne8 by Molmil
YDCE protein from Bacillus subtilis
Descriptor: 2-(2-{2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHANOL, ACETIC ACID, conserved hypothetical protein YDCE
Authors:Gogos, A, Mu, H, Bahna, F, Gomez, C.A, Shapiro, L, Burley, S.K, New York SGX Research Center for Structural Genomics (NYSGXRC)
Deposit date:2002-12-10
Release date:2003-01-14
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structure of YdcE protein from Bacillus subtilis
PROTEINS: STRUCT.,FUNCT.,GENET., 53, 2003

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