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PDB: 98 results

6J34
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BU of 6j34 by Molmil
Crystal Structure of maltotriose-complex of PulA from Klebsiella pneumoniae
Descriptor: ACETATE ION, GLYCEROL, MAGNESIUM ION, ...
Authors:Saka, N, Iwamoto, H, Takahashi, N, Mizutani, K, Mikami, B.
Deposit date:2019-01-09
Release date:2019-09-18
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (1.498 Å)
Cite:Relationship between the induced-fit loop and the activity of Klebsiella pneumoniae pullulanase.
Acta Crystallogr D Struct Biol, 75, 2019
6J4H
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BU of 6j4h by Molmil
Crystal Structure of maltotriose-complex of PulA-G680L mutant from Klebsiella pneumoniae
Descriptor: CALCIUM ION, GLYCEROL, MAGNESIUM ION, ...
Authors:Saka, N, Iwamoto, H, Takahashi, N, Mizutani, K, Mikami, B.
Deposit date:2019-01-09
Release date:2019-09-18
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (1.641 Å)
Cite:Relationship between the induced-fit loop and the activity of Klebsiella pneumoniae pullulanase.
Acta Crystallogr D Struct Biol, 75, 2019
6J35
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BU of 6j35 by Molmil
Crystal structure of ligand-free of PulA-G680L mutant from Klebsiella pneumoniae
Descriptor: CALCIUM ION, GLYCEROL, MAGNESIUM ION, ...
Authors:Saka, N, Iwamoto, H, Takahashi, N, Mizutani, K, Mikami, B.
Deposit date:2019-01-09
Release date:2019-09-18
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (1.839 Å)
Cite:Relationship between the induced-fit loop and the activity of Klebsiella pneumoniae pullulanase.
Acta Crystallogr D Struct Biol, 75, 2019
6J33
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BU of 6j33 by Molmil
Crystal structure of ligand-free of PulA from Klebsiella pneumoniae
Descriptor: ACETATE ION, CALCIUM ION, MAGNESIUM ION, ...
Authors:Saka, N, Iwamoto, H, Takahashi, N, Mizutani, K, Mikami, B.
Deposit date:2019-01-09
Release date:2019-09-18
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (1.297 Å)
Cite:Relationship between the induced-fit loop and the activity of Klebsiella pneumoniae pullulanase.
Acta Crystallogr D Struct Biol, 75, 2019
5YNA
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BU of 5yna by Molmil
Crystal structure of Pullulanase from Klebsiella pneumoniae complex at 1 mM alpha-cyclodextrin
Descriptor: ACETATE ION, CALCIUM ION, Cyclohexakis-(1-4)-(alpha-D-glucopyranose), ...
Authors:Saka, N, Iwamoto, H, Takahashi, N, Mizutani, K, Mikami, B.
Deposit date:2017-10-24
Release date:2018-10-24
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (1.96 Å)
Cite:Elucidation of the mechanism of interaction between Klebsiella pneumoniae pullulanase and cyclodextrin
Acta Crystallogr D Struct Biol, 74, 2018
5YNC
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BU of 5ync by Molmil
Crystal structure of Pullulanase from Klebsiella pneumoniae complex at 1 mM beta-cyclodextrin
Descriptor: ACETATE ION, CALCIUM ION, Cycloheptakis-(1-4)-(alpha-D-glucopyranose), ...
Authors:Saka, N, Iwamoto, H, Takahashi, N, Mizutani, K, Mikami, B.
Deposit date:2017-10-24
Release date:2018-10-24
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.32 Å)
Cite:Elucidation of the mechanism of interaction between Klebsiella pneumoniae pullulanase and cyclodextrin
Acta Crystallogr D Struct Biol, 74, 2018
5YN2
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BU of 5yn2 by Molmil
Crystal structure of apo Pullulanase from Klebsiella pneumoniae in space group P43212
Descriptor: CALCIUM ION, MAGNESIUM ION, PulA protein
Authors:Saka, N, Iwamoto, H, Takahashi, N, Mizutani, K, Mikami, B.
Deposit date:2017-10-24
Release date:2018-10-24
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (2.301 Å)
Cite:Elucidation of the mechanism of interaction between Klebsiella pneumoniae pullulanase and cyclodextrin
Acta Crystallogr D Struct Biol, 74, 2018
5YN7
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BU of 5yn7 by Molmil
Crystal structure of Pullulanase from Klebsiella pneumoniae complex at 0.1 mM beta-cyclodextrin
Descriptor: 1,2-ETHANEDIOL, CALCIUM ION, Cycloheptakis-(1-4)-(alpha-D-glucopyranose), ...
Authors:Saka, N, Iwamoto, H, Takahashi, N, Mizutani, K, Mikami, B.
Deposit date:2017-10-24
Release date:2018-10-24
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.586 Å)
Cite:Elucidation of the mechanism of interaction between Klebsiella pneumoniae pullulanase and cyclodextrin
Acta Crystallogr D Struct Biol, 74, 2018
5YNH
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BU of 5ynh by Molmil
Crystal structure of Pullulanase from Klebsiella pneumoniae complex at 10 mM gamma-cyclodextrin
Descriptor: CALCIUM ION, Cyclooctakis-(1-4)-(alpha-D-glucopyranose), GLYCEROL, ...
Authors:Saka, N, Iwamoto, H, Takahashi, N, Mizutani, K, Mikami, B.
Deposit date:2017-10-24
Release date:2018-10-24
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Elucidation of the mechanism of interaction between Klebsiella pneumoniae pullulanase and cyclodextrin
Acta Crystallogr D Struct Biol, 74, 2018
5YNE
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BU of 5yne by Molmil
Crystal structure of Pullulanase from Klebsiella pneumoniae complex at 10 mM alpha-cyclodextrin
Descriptor: CALCIUM ION, Cyclohexakis-(1-4)-(alpha-D-glucopyranose), DI(HYDROXYETHYL)ETHER, ...
Authors:Saka, N, Iwamoto, H, Takahashi, N, Mizutani, K, Mikami, B.
Deposit date:2017-10-24
Release date:2018-10-24
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.199 Å)
Cite:Elucidation of the mechanism of interaction between Klebsiella pneumoniae pullulanase and cyclodextrin
Acta Crystallogr D Struct Biol, 74, 2018
5YND
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BU of 5ynd by Molmil
Crystal structure of Pullulanase from Klebsiella pneumoniae complex at 1 mM gamma-cyclodextrin
Descriptor: CALCIUM ION, DI(HYDROXYETHYL)ETHER, DUF3372 domain-containing protein, ...
Authors:Saka, N, Iwamoto, H, Takahashi, N, Mizutani, K, Mikami, B.
Deposit date:2017-10-24
Release date:2018-10-24
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.227 Å)
Cite:Elucidation of the mechanism of interaction between Klebsiella pneumoniae pullulanase and cyclodextrin
Acta Crystallogr D Struct Biol, 74, 2018
9BPG
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BU of 9bpg by Molmil
Artemia franciscana ATP synthase FO domain, state 1, pH 7.0
Descriptor: ATP synthase protein 8, ATP synthase subunit 6.8PL, ATP synthase subunit a, ...
Authors:Mnatsakanyan, N, Mello, J.F.R.
Deposit date:2024-05-07
Release date:2025-03-26
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Cryo-EM structure of the brine shrimp mitochondrial ATP synthase suggests an inactivation mechanism for the ATP synthase leak channel.
Cell Death Differ., 2025
7WB8
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BU of 7wb8 by Molmil
Crystal structure of Bovine Pancreatic Trypsin in complex with 5-Methoxytryptamine at Room Temperature
Descriptor: 2-(5-methoxy-1H-indol-3-yl)ethanamine, CALCIUM ION, Cationic trypsin, ...
Authors:Sakai, N, Okumura, H, Yamamoto, M, Kumasaka, T.
Deposit date:2021-12-15
Release date:2022-06-15
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (1.38 Å)
Cite:In situ crystal data-collection and ligand-screening system at SPring-8.
Acta Crystallogr.,Sect.F, 78, 2022
7WB9
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BU of 7wb9 by Molmil
Crystal structure of Bovine Pancreatic Trypsin in complex with 5-Chlorotryptamine at Room Temperature
Descriptor: 2-(5-chloranyl-1~{H}-indol-3-yl)ethanamine, CALCIUM ION, Cationic trypsin, ...
Authors:Sakai, N, Okumura, H, Yamamoto, M, Kumasaka, T.
Deposit date:2021-12-15
Release date:2022-06-15
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (1.56 Å)
Cite:In situ crystal data-collection and ligand-screening system at SPring-8.
Acta Crystallogr.,Sect.F, 78, 2022
7WB6
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BU of 7wb6 by Molmil
Crystal structure of Bovine Pancreatic Trypsin in complex with 4-Bromobenzamidine at Room Temperature
Descriptor: 4-bromanylbenzenecarboximidamide, CALCIUM ION, Cationic trypsin, ...
Authors:Sakai, N, Okumura, H, Yamamoto, M, Kumasaka, T.
Deposit date:2021-12-15
Release date:2022-06-15
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (1.48 Å)
Cite:In situ crystal data-collection and ligand-screening system at SPring-8.
Acta Crystallogr.,Sect.F, 78, 2022
7WA0
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BU of 7wa0 by Molmil
Crystal structure of Bovine Pancreatic Trypsin in complex with Benzamidine at Room Temperature
Descriptor: BENZAMIDINE, CALCIUM ION, Cationic trypsin, ...
Authors:Sakai, N, Okumura, H, Yamamoto, M, Kumasaka, T.
Deposit date:2021-12-11
Release date:2022-06-15
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (1.77 Å)
Cite:In situ crystal data-collection and ligand-screening system at SPring-8.
Acta Crystallogr.,Sect.F, 78, 2022
7WA2
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BU of 7wa2 by Molmil
Crystal structure of Bovine Pancreatic Trypsin in complex with 4-Methoxybenzamidine at Room Temperature
Descriptor: 4-methoxybenzenecarboximidamide, CALCIUM ION, Cationic trypsin, ...
Authors:Sakai, N, Okumura, H, Yamamoto, M, Kumasaka, T.
Deposit date:2021-12-11
Release date:2022-06-15
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (1.52 Å)
Cite:In situ crystal data-collection and ligand-screening system at SPring-8.
Acta Crystallogr.,Sect.F, 78, 2022
7WBA
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BU of 7wba by Molmil
Crystal structure of Bovine Pancreatic Trypsin in complex with Tryptamine at Room Temperature
Descriptor: 2-(1H-INDOL-3-YL)ETHANAMINE, CALCIUM ION, Cationic trypsin, ...
Authors:Sakai, N, Okumura, H, Yamamoto, M, Kumasaka, T.
Deposit date:2021-12-15
Release date:2022-06-15
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:In situ crystal data-collection and ligand-screening system at SPring-8.
Acta Crystallogr.,Sect.F, 78, 2022
7WB7
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BU of 7wb7 by Molmil
Crystal structure of Bovine Pancreatic Trypsin in complex with Serotonin at Room Temperature
Descriptor: CALCIUM ION, Cationic trypsin, DIMETHYL SULFOXIDE, ...
Authors:Sakai, N, Okumura, H, Yamamoto, M, Kumasaka, T.
Deposit date:2021-12-15
Release date:2022-06-15
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:In situ crystal data-collection and ligand-screening system at SPring-8.
Acta Crystallogr.,Sect.F, 78, 2022
9B3J
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BU of 9b3j by Molmil
Artemia franciscana ATP synthase state 2 (composite structure), pH 8.0
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, ATP synthase coupling factor 6, F6, ...
Authors:Mnatsakanyan, N, Mello, J.F.R.
Deposit date:2024-03-19
Release date:2025-03-26
Method:ELECTRON MICROSCOPY (2.73 Å)
Cite:Cryo-EM structure of the brine shrimp mitochondrial ATP synthase suggests an inactivation mechanism for the ATP synthase leak channel.
Cell Death Differ., 2025
3W3D
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BU of 3w3d by Molmil
Crystal structure of smooth muscle G actin DNase I complex
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Actin, gamma-enteric smooth muscle, ...
Authors:Sakabe, N, Sakabe, K, Sasaki, K, Kondo, H, Shimomur, M.
Deposit date:2012-12-20
Release date:2013-01-30
Last modified:2025-03-26
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Refined structure and solvent network of chicken gizzard G-actin DNase 1 complex at 1.8A resolution
Acta Crystallogr.,Sect.A, 49, 1993
3W7Y
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BU of 3w7y by Molmil
0.92A structure of 2Zn human insulin at 100K
Descriptor: Insulin, ZINC ION
Authors:Sakabe, N, Sakabe, K, Sasaki, K, Murayoshi, M.
Deposit date:2013-03-11
Release date:2013-07-03
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (0.92 Å)
Cite:0.92A structure of 2Zn human insulin at 100K
To be Published
9B0X
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BU of 9b0x by Molmil
Artemia franciscana ATP synthase state 2 (composite structure), pH 7.0
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, ATP synthase coupling factor 6, ...
Authors:Mnatsakanyan, N, Mello, J.F.R.
Deposit date:2024-03-12
Release date:2025-03-26
Method:ELECTRON MICROSCOPY (2.6 Å)
Cite:Cryo-EM structure of the brine shrimp mitochondrial ATP synthase suggests an inactivation mechanism for the ATP synthase leak channel.
Cell Death Differ., 2025
3WCK
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BU of 3wck by Molmil
Crystal structure of monomeric photosensitizing fluorescent protein, Supernova
Descriptor: Monomeric photosenitizing fluorescent protein supernova
Authors:Sakai, N, Matsuda, T, Takemoto, K, Nagai, T.
Deposit date:2013-05-27
Release date:2013-10-02
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:SuperNova, a monomeric photosensitizing fluorescent protein for chromophore-assisted light inactivation
Sci Rep, 3, 2013
6JUX
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BU of 6jux by Molmil
Crystal structure of human ALK2 kinase domain with R206H mutation in complex with RK-71807
Descriptor: 4-(1-ethyl-3-pyridin-3-yl-pyrazol-4-yl)-~{N}-(4-piperazin-1-ylphenyl)pyrimidin-2-amine, Activin receptor type-1, SULFATE ION
Authors:Sakai, N, Mishima-Tsumagari, C, Matsumoto, T, Shirouzu, M.
Deposit date:2019-04-15
Release date:2020-04-15
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Structural Basis of Activin Receptor-Like Kinase 2 (R206H) Inhibition by Bis-heteroaryl Pyrazole-Based Inhibitors for the Treatment of Fibrodysplasia Ossificans Progressiva Identified by the Integration of Ligand-Based and Structure-Based Drug Design Approaches.
Acs Omega, 5, 2020

 

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