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PDB: 93 results

3R5I
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BU of 3r5i by Molmil
Crystal structure of liganded Hemoglobin complexed with a potent Antisickling agent, INN-312
Descriptor: 5-methoxy-2-(pyridin-3-ylmethoxy)benzaldehyde, Hemoglobin subunit alpha, Hemoglobin subunit beta, ...
Authors:Safo, M.K, Musayev, F.N, Safo, R.P, Daniels, D, Eseonu, D.N, Parra, J.
Deposit date:2011-03-18
Release date:2011-04-06
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural and in Vitro Chracterization of Pyridyl Derivatives of Benzaldehydes : Highly Potent Antisickling Agents
To be Published
3KEU
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BU of 3keu by Molmil
Crystal Structure of Human PL Kinase with bound PLP and ATP
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ...
Authors:Safo, M.K, Gandhi, A.K, Musayev, F.N.
Deposit date:2009-10-26
Release date:2009-11-03
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structure of PL kinase in complex with MgATP and PLP: Structural basis of severe induced MgATP substrate inhibition of the enzyme
To be Published
4EN4
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BU of 4en4 by Molmil
Crystal Structure of the Ternary Human PL Kinase-Ginkgotoxin-MgATP Complex
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 5-(hydroxymethyl)-4-(methoxymethyl)-2-methylpyridin-3-ol, ADENOSINE-5'-TRIPHOSPHATE, ...
Authors:Safo, M.K, Musayev, F.N, Gandhi, A.K.
Deposit date:2012-04-12
Release date:2012-05-02
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Crystal structures of human pyridoxal kinase in complex with the neurotoxins, ginkgotoxin and theophylline: insights into pyridoxal kinase inhibition.
Plos One, 7, 2012
3HY8
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BU of 3hy8 by Molmil
Crystal Structure of Human Pyridoxine 5'-Phosphate Oxidase R229W Mutant
Descriptor: FLAVIN MONONUCLEOTIDE, PHOSPHATE ION, PYRIDOXAL-5'-PHOSPHATE, ...
Authors:Safo, M.K, Musayev, F.N, Di Salvo, M.L, Saavedra, M.K, Schirch, V.
Deposit date:2009-06-22
Release date:2009-07-28
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Molecular basis of reduced pyridoxine 5'-phosphate oxidase catalytic activity in neonatal epileptic encephalopathy disorder
J.Biol.Chem., 284, 2009
4FAK
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BU of 4fak by Molmil
Crystal Structure of OrfX in Complex with S-Adenosylmethionine
Descriptor: PHOSPHATE ION, Ribosomal RNA large subunit methyltransferase H, S-ADENOSYLMETHIONINE, ...
Authors:Safo, M.K, Musayev, F.N, Boundy, S, Archer, G.L, Rife, J.P, O'Farrell, H.C.
Deposit date:2012-05-22
Release date:2012-06-06
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Characterization of the Staphylococcus aureus rRNA Methyltransferase Encoded by orfX, the Gene Containing the Staphylococcal Chromosome Cassette mec (SCCmec) Insertion Site.
J.Biol.Chem., 288, 2013
4EOH
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BU of 4eoh by Molmil
Crystal Structure of Human PL Kinase with bound Theophylline
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, Pyridoxal Kinase, SODIUM ION, ...
Authors:Safo, M.K, Gandhi, A.K, Musayev, F.N.
Deposit date:2012-04-14
Release date:2012-05-02
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structures of human pyridoxal kinase in complex with the neurotoxins, ginkgotoxin and theophylline: insights into pyridoxal kinase inhibition.
Plos One, 7, 2012
1K0Y
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BU of 1k0y by Molmil
X-ray Crystallographic Analyses of Symmetrical Allosteric Effectors of Hemoglobin. Compounds Designed to Link Primary and Secondary Binding Sites
Descriptor: 2-{4-[(3{2-[4-(1-CARBOXY-1-METHYL-ETHOXY)-PHENYL]-ACETYLAMINO}-PHENYLCARBAMOYL)-METHYL]-PHENOXY}-2-METHYL-PROPIONIC ACID, PROTOPORPHYRIN IX CONTAINING FE, SULFATE ION, ...
Authors:Safo, M.K, Boyiri, T, Burnett, J.C, Danso-Danquah, R, Moure, C.M, Joshi, G.S, Abraham, D.J.
Deposit date:2001-09-21
Release date:2001-10-03
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (1.87 Å)
Cite:X-ray crystallographic analyses of symmetrical allosteric effectors of hemoglobin: compounds designed to link primary and secondary binding sites.
Acta Crystallogr.,Sect.D, 58, 2002
3W4U
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BU of 3w4u by Molmil
Human zeta-2 beta-2-s hemoglobin
Descriptor: CARBON MONOXIDE, Hemoglobin subunit beta, Hemoglobin subunit zeta, ...
Authors:Safo, M.K, Ko, T.-P, Russell, J.E.
Deposit date:2013-01-16
Release date:2013-02-06
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Structure of fully liganded Hb zeta 2 beta 2(s) trapped in a tense conformation
Acta Crystallogr.,Sect.D, 69, 2013
3WCP
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BU of 3wcp by Molmil
Deoxyhemoglobin SH-drug complex
Descriptor: (2R)-2,3-diphosphoglyceric acid, Hemoglobin subunit alpha, Hemoglobin subunit beta, ...
Authors:Safo, M.K, Ko, T.P.
Deposit date:2013-05-30
Release date:2013-06-26
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (1.94 Å)
Cite:Deoxyhemoglobin SH-drug complex
To be Published
1QXD
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BU of 1qxd by Molmil
Structural Basis for the Potent Antisickling Effect of a Novel Class of 5-Membered Heterocyclic Aldehydic Compounds
Descriptor: FURFURAL, Hemoglobin alpha chain, Hemoglobin beta chain, ...
Authors:Safo, M.K, Abdulmalik, O, Danso-Danquah, R, Nokuri, S, Joshi, G.S, Musayev, F.N, Asakura, T, Abraham, D.J.
Deposit date:2003-09-05
Release date:2003-09-16
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Structural basis for the potent antisickling effect of a novel class of five-membered heterocyclic aldehydic compounds
J.Med.Chem., 47, 2004
1QXE
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BU of 1qxe by Molmil
Structural Basis for the Potent Antisickling Effect of a Novel Class of 5-Membered Heterocyclic Aldehydic Compounds
Descriptor: 5-HYDROXYMETHYL-FURFURAL, Hemoglobin alpha chain, Hemoglobin beta chain, ...
Authors:Safo, M.K, Abdulmalik, O, Danso-Danquah, R, Nokuri, S, Joshi, G.S, Musayev, F.N, Asakura, T, Abraham, D.J.
Deposit date:2003-09-05
Release date:2003-09-16
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Structural basis for the potent antisickling effect of a novel class of five-membered heterocyclic aldehydic compounds
J.Med.Chem., 47, 2004
5E29
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BU of 5e29 by Molmil
Crystal Structure of Deoxygenated Hemoglobin in Complex with an Allosteric Effector and Nitric Oxide
Descriptor: 2-(nitrooxy)ethyl 2-(4-{2-[(3,5-dimethylphenyl)amino]-2-oxoethyl}phenoxy)-2-methylpropanoate, 2-{4-[(3,5-DIMETHYLANILINO)-CARBONYL-METHYL]-PHENOXY}-2-METHYLPROPIONIC ACID, CACODYLATE ION, ...
Authors:Safo, M.K, Deshpande, T.M.
Deposit date:2015-09-30
Release date:2015-10-14
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Design, Synthesis, and Investigation of Novel Nitric Oxide (NO)-Releasing Prodrugs as Drug Candidates for the Treatment of Ischemic Disorders: Insights into NO-Releasing Prodrug Biotransformation and Hemoglobin-NO Biochemistry.
Biochemistry, 54, 2015
5E6E
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BU of 5e6e by Molmil
Crystal Structure of Carbonmonoxy Sickle Hemoglobin in R-State Conformation
Descriptor: CARBON MONOXIDE, Hemoglobin subunit alpha, Hemoglobin subunit beta, ...
Authors:Safo, M.K, Ahmed, M.H.
Deposit date:2015-10-09
Release date:2015-10-28
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.76 Å)
Cite:Crystal structure of carbonmonoxy sickle hemoglobin in R-state conformation.
J.Struct.Biol., 194, 2016
2YXT
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BU of 2yxt by Molmil
Human Pyridoxal Kinase
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, PHOSPHATE ION, Pyridoxal kinase, ...
Authors:Safo, M.K, Musayev, F.N, Ko, T.P, Schirch, V.
Deposit date:2007-04-27
Release date:2008-03-11
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal Structure of human pyridoxal kinase: structural basis of M(+) and M(2+) activation.
Protein Sci., 16, 2007
2YXU
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BU of 2yxu by Molmil
Human Pyridoxal Kinase
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ...
Authors:Safo, M.K, Musayev, F.N, Ko, T.P, Schirch, V.
Deposit date:2007-04-27
Release date:2008-03-11
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal Structure of human pyridoxal kinase: structural basis of M(+) and M(2+) activation.
Protein Sci., 16, 2007
1MKO
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BU of 1mko by Molmil
A Fourth Quaternary Structure of Human Hemoglobin A at 2.18 A Resolution
Descriptor: CARBON MONOXIDE, Hemoglobin alpha chain, Hemoglobin beta chain, ...
Authors:Safo, M.K, Abraham, D.J.
Deposit date:2002-08-29
Release date:2002-09-06
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.18 Å)
Cite:The enigma of the liganded hemoglobin end state: a novel quaternary structure of human carbonmonoxy hemoglobin.
Biochemistry, 44, 2005
4RJY
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BU of 4rjy by Molmil
Crystal structure of E. coli L-Threonine Aldolase in complex with a non-covalently uncleaved bound L-serine substrate
Descriptor: Low specificity L-threonine aldolase, SERINE, SODIUM ION
Authors:Safo, M.K, Chowdhury, N, Gandhi, A.K.
Deposit date:2014-10-11
Release date:2014-10-29
Last modified:2015-02-04
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Molecular basis of E. colil-threonine aldolase catalytic inactivation at low pH.
Biochim.Biophys.Acta, 1854, 2015
1LJW
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BU of 1ljw by Molmil
Crystal Structure of Human Carbonmonoxy Hemoglobin at 2.16 A: A Snapshot of the Allosteric Transition
Descriptor: CARBON MONOXIDE, PHOSPHATE ION, PROTOPORPHYRIN IX CONTAINING FE, ...
Authors:Safo, M.K, Burnett, J.C, Musayev, F.N, Nokuri, S, Abraham, D.J.
Deposit date:2002-04-22
Release date:2002-05-01
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (2.16 Å)
Cite:Structure of human carbonmonoxyhemoglobin at 2.16 A: a snapshot of the allosteric transition.
Acta Crystallogr.,Sect.D, 58, 2002
1WV4
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BU of 1wv4 by Molmil
X-ray Structure of Escherichia coli pyridoxine 5'-phosphate oxidase in tetragonal crystal form
Descriptor: FLAVIN MONONUCLEOTIDE, PHOSPHATE ION, Pyridoxamine 5'-phosphate oxidase
Authors:Safo, M.K, Musayev, F.N, Schirch, V.
Deposit date:2004-12-11
Release date:2004-12-28
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structure of Escherichia coli pyridoxine 5'-phosphate oxidase in a tetragonal crystal form: insights into the mechanistic pathway of the enzyme.
Acta Crystallogr.,Sect.D, 61, 2005
1XSD
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BU of 1xsd by Molmil
Crystal structure of the BlaI repressor in complex with DNA
Descriptor: 5'-D(P*TP*AP*CP*TP*AP*CP*AP*TP*AP*TP*GP*TP*AP*GP*TP*A)-3', penicillinase repressor
Authors:Safo, M.K, Ko, T.-P, Musayev, F.N, Zhao, Q, Robinson, H, Scarsdale, N, Wang, A.H.-J, Archer, G.L.
Deposit date:2004-10-19
Release date:2005-03-29
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Crystal structures of the BlaI repressor from Staphylococcus aureus and its complex with DNA: insights into transcriptional regulation of the bla and mec operons
J.Bacteriol., 187, 2005
1YZI
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BU of 1yzi by Molmil
A novel quaternary structure of human carbonmonoxy hemoglobin
Descriptor: CARBON MONOXIDE, Hemoglobin alpha chain, Hemoglobin beta chain, ...
Authors:Safo, M.K, Abraham, D.J.
Deposit date:2005-02-28
Release date:2005-03-15
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.07 Å)
Cite:The enigma of the liganded hemoglobin end state: a novel quaternary structure of human carbonmonoxy hemoglobin.
Biochemistry, 44, 2005
2D45
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BU of 2d45 by Molmil
Crystal structure of the MecI-mecA repressor-operator complex
Descriptor: 5'-D(P*TP*AP*CP*TP*AP*CP*AP*TP*AP*TP*GP*TP*AP*GP*TP*A)-3', Methicillin resistance regulatory protein mecI
Authors:Safo, M.K, Ko, T.-P, Musayev, F.N, Zhao, Q, Wang, A.H.-J, Archer, G.L.
Deposit date:2005-10-09
Release date:2005-10-25
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (3.8 Å)
Cite:Structure of the MecI repressor from Staphylococcus aureus in complex with the cognate DNA operator of mec.
Acta Crystallogr.,Sect.F, 62, 2006
2DDO
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BU of 2ddo by Molmil
Crystal Structure of Pyridoxal Kinase from the Escherichia coli pdxK gene at 2.6 A resolution
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, PHOSPHATE ION, ...
Authors:Safo, M.K, Musayev, F.N, di Salvo, M.L, Hunt, S, Claude, J.B, Schirch, V.
Deposit date:2006-02-02
Release date:2006-08-15
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Crystal structure of pyridoxal kinase from the Escherichia coli pdxK gene: implications for the classification of pyridoxal kinases.
J.Bacteriol., 188, 2006
2DDM
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BU of 2ddm by Molmil
Crystal Structure of Pyridoxal Kinase from the Escherichia coli PdxK gene at 2.1 A resolution
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Pyridoxine kinase
Authors:Safo, M.K, Musayev, F.N, di Salvo, M.L, Hunt, S, Claude, J.B, Schirch, V.
Deposit date:2006-02-02
Release date:2006-08-15
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structure of pyridoxal kinase from the Escherichia coli pdxK gene: implications for the classification of pyridoxal kinases.
J.Bacteriol., 188, 2006
3D17
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BU of 3d17 by Molmil
A triply ligated crystal structure of relaxed state human hemoglobin
Descriptor: CARBON MONOXIDE, Hemoglobin subunit alpha, Hemoglobin subunit beta, ...
Authors:Safo, M.K, Musayev, F.N, Jenkins, J, Abraham, D.J.
Deposit date:2008-05-05
Release date:2008-06-03
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:A triply ligated crystal structure of relaxed state human hemoglobin
TO BE PUBLISHED

 

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