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PDB: 277 results

4J2N
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BU of 4j2n by Molmil
Crystal Structure of mycobacteriophage Pukovnik Xis
Descriptor: Gp37, SULFATE ION
Authors:Homa, N.J, Amrich, C.G, Heroux, A, VanDemark, A.P.
Deposit date:2013-02-04
Release date:2013-10-23
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.348 Å)
Cite:The Structure of Xis Reveals the Basis for Filament Formation and Insight into DNA Bending within a Mycobacteriophage Intasome.
J.Mol.Biol., 426, 2014
4GDX
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BU of 4gdx by Molmil
Crystal Structure of Human Gamma-Glutamyl Transpeptidase--Glutamate complex
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, CHLORIDE ION, GLUTAMIC ACID, ...
Authors:West, M.B, Chen, Y, Wickham, S, Heroux, A, Cahill, K, Hanigan, M.H, Mooers, B.H.M.
Deposit date:2012-08-01
Release date:2013-09-25
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.67 Å)
Cite:Novel Insights into Eukaryotic gamma-Glutamyltranspeptidase 1 from the Crystal Structure of the Glutamate-bound Human Enzyme.
J.Biol.Chem., 288, 2013
4L1P
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BU of 4l1p by Molmil
Crystal Structure of Human Rtf1 Plus3 domain
Descriptor: GLYCEROL, RNA polymerase-associated protein RTF1 homolog
Authors:Wier, A.D, Heroux, A, VanDemark, A.P.
Deposit date:2013-06-03
Release date:2013-10-02
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.12 Å)
Cite:Structural basis for Spt5-mediated recruitment of the Paf1 complex to chromatin.
Proc.Natl.Acad.Sci.USA, 110, 2013
4PXL
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BU of 4pxl by Molmil
Structure of Zm ALDH2-3 (RF2C) in complex with NAD
Descriptor: 1,2-ETHANEDIOL, CALCIUM ION, Cytosolic aldehyde dehydrogenase RF2C, ...
Authors:Morera, S, Vigouroux, A, Kopecny, D.
Deposit date:2014-03-24
Release date:2015-03-18
Last modified:2015-05-20
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Role and structural characterization of plant aldehyde dehydrogenases from family 2 and family 7.
Biochem.J., 468, 2015
3P1H
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BU of 3p1h by Molmil
Crystal structure of Staphylococcal nuclease variant Delta+PHS V23K/I92A at cryogenic temperature
Descriptor: CALCIUM ION, THYMIDINE-3',5'-DIPHOSPHATE, thermonuclease
Authors:Clark, I.A, Caro, J.A, Sue, G, Schlessman, J.L, Garcia-Moreno E, B, Heroux, A.
Deposit date:2010-09-30
Release date:2011-10-05
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.79 Å)
Cite:Pressure unfolding effects of artificial cavities in proteins.
To be Published
4OAL
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BU of 4oal by Molmil
Crystal structure of maize cytokinin oxidase/dehydrogenase 4 (ZmCKO4) in complex with phenylurea inhibitor CPPU in alternative spacegroup
Descriptor: 1-(2-chloropyridin-4-yl)-3-phenylurea, Cytokinin dehydrogenase 4, DIMETHYL SULFOXIDE, ...
Authors:Kopecny, D, Morera, S, Vigouroux, A, Koncitikova, R.
Deposit date:2014-01-05
Release date:2015-04-01
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Kinetic and structural investigation of the cytokinin oxidase/dehydrogenase active site.
Febs J., 283, 2016
3QB3
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BU of 3qb3 by Molmil
Crystal structure of Staphylococcal nuclease variant Delta+PHS I92KL25A at cryogenic temperature
Descriptor: CALCIUM ION, THYMIDINE-3',5'-DIPHOSPHATE, Thermonuclease
Authors:Caro, J.A, Sue, G, Schlessman, J.L, Heroux, A, Garcia-Moreno E, B.
Deposit date:2011-01-12
Release date:2012-01-18
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.63 Å)
Cite:Relocation of internal ionizable residues to cavities created by single alanine substitutions
To be Published
4EA5
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BU of 4ea5 by Molmil
Structure of the glycoslyase domain of MBD4 bound to a 5hmU containing DNA
Descriptor: DNA (5'-D(*CP*CP*AP*GP*CP*GP*(5HU)*GP*CP*AP*GP*C)-3'), DNA (5'-D(*GP*CP*TP*GP*CP*GP*CP*GP*CP*TP*GP*G)-3'), Methyl-CpG-binding domain protein 4
Authors:Morera, S, Vigouroux, A.
Deposit date:2012-03-22
Release date:2012-08-08
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.14 Å)
Cite:Biochemical and structural characterization of the glycosylase domain of MBD4 bound to thymine and 5-hydroxymethyuracil-containing DNA.
Nucleic Acids Res., 40, 2012
3RZ5
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BU of 3rz5 by Molmil
Fluoroalkyl and Alkyl Chains Have Similar Hydrophobicities in Binding to the Hydrophobic Wall of Carbonic Anhydrase
Descriptor: Carbonic anhydrase 2, DIMETHYL SULFOXIDE, N-pentyl-4-sulfamoylbenzamide, ...
Authors:Snyder, P.W, Bai, S, Heroux, A, Whitesides, G.W.
Deposit date:2011-05-11
Release date:2011-08-10
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Fluoroalkyl and alkyl chains have similar hydrophobicities in binding to the "hydrophobic wall" of carbonic anhydrase.
J.Am.Chem.Soc., 133, 2011
3RYY
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BU of 3ryy by Molmil
Fluoroalkyl and Alkyl Chains Have Similar Hydrophobicities in Binding to the Hydrophobic Wall of Carbonic Anhydrase
Descriptor: Carbonic anhydrase 2, N-propyl-4-sulfamoylbenzamide, ZINC ION
Authors:Snyder, P.W, Bai, S, Heroux, A, Whitesides, G.W.
Deposit date:2011-05-11
Release date:2011-08-10
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.16 Å)
Cite:Fluoroalkyl and alkyl chains have similar hydrophobicities in binding to the "hydrophobic wall" of carbonic anhydrase.
J.Am.Chem.Soc., 133, 2011
3RZ8
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BU of 3rz8 by Molmil
Fluoroalkyl and Alkyl Chains Have Similar Hydrophobicities in Binding to the Hydrophobic Wall of Carbonic Anhydrase
Descriptor: Carbonic anhydrase 2, DIMETHYL SULFOXIDE, N-hexyl-4-sulfamoylbenzamide, ...
Authors:Snyder, P.W, Bai, S, Heroux, A, Whitesides, G.W.
Deposit date:2011-05-11
Release date:2011-08-10
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Fluoroalkyl and alkyl chains have similar hydrophobicities in binding to the "hydrophobic wall" of carbonic anhydrase.
J.Am.Chem.Soc., 133, 2011
4I8P
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BU of 4i8p by Molmil
Crystal structure of aminoaldehyde dehydrogenase 1a from Zea mays (ZmAMADH1a)
Descriptor: 1,2-ETHANEDIOL, Aminoaldehyde dehydrogenase 1, DI(HYDROXYETHYL)ETHER, ...
Authors:Morera, S, Vigouroux, A, Kopecny, D.
Deposit date:2012-12-04
Release date:2013-02-20
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Plant ALDH10 family: identifying critical residues for substrate specificity and trapping a thiohemiacetal intermediate.
J.Biol.Chem., 288, 2013
3SK5
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BU of 3sk5 by Molmil
Crystal structure of Staphylococcal nuclease variant Delta+PHS V39D at cryogenic temperature
Descriptor: CALCIUM ION, THYMIDINE-3',5'-DIPHOSPHATE, Thermonuclease
Authors:Robinson, A.C, Schlessman, J.L, Heroux, A, Garcia-Moreno E, B.
Deposit date:2011-06-22
Release date:2011-07-06
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal structure of Staphylococcal nuclease variant Delta+PHS V39D at cryogenic temperature
To be Published
4O95
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BU of 4o95 by Molmil
Crystal structure of maize cytokinin oxidase/dehydrogenase 4 (ZmCKO4) in complex with phenylurea inhibitor CPPU
Descriptor: 1,2-ETHANEDIOL, 1-(2-chloropyridin-4-yl)-3-phenylurea, Cytokinin dehydrogenase 4, ...
Authors:Kopecny, D, Morera, S, Vigouroux, A, Koncitikova, R.
Deposit date:2014-01-01
Release date:2015-04-01
Last modified:2022-08-24
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Kinetic and structural investigation of the cytokinin oxidase/dehydrogenase active site.
Febs J., 283, 2016
3OSO
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BU of 3oso by Molmil
Crystal structure of Staphylococcal nuclease variant Delta+PHS L25A at cryogenic temperature
Descriptor: CALCIUM ION, THYMIDINE-3',5'-DIPHOSPHATE, Thermonuclease
Authors:Caro, J.A, Schlessman, J.L, Garcia-Moreno, E.B, Heroux, A.
Deposit date:2010-09-09
Release date:2011-09-21
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Cavities determine the pressure unfolding of proteins.
Proc.Natl.Acad.Sci.USA, 109, 2012
3OWF
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BU of 3owf by Molmil
Crystal structure of Staphylococcal nuclease variant Delta+PHS V66R at cryogenic temperature
Descriptor: CALCIUM ION, PHOSPHATE ION, THYMIDINE-3',5'-DIPHOSPHATE, ...
Authors:Schlessman, J.L, Khangulov, V, Heroux, A, Garcia-Moreno E, B.
Deposit date:2010-09-17
Release date:2010-10-20
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Domain swapping promoted by a single mutation that introduces an ionizable group into the hydrophobic core of a protein
To be Published
4L1U
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BU of 4l1u by Molmil
Crystal Structure of Human Rtf1 Plus3 Domain in Complex with Spt5 CTR Phosphopeptide
Descriptor: GLYCEROL, RNA polymerase-associated protein RTF1 homolog, SULFATE ION, ...
Authors:Wier, A.D, Heroux, A, VanDemark, A.P.
Deposit date:2013-06-03
Release date:2013-10-02
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.424 Å)
Cite:Structural basis for Spt5-mediated recruitment of the Paf1 complex to chromatin.
Proc.Natl.Acad.Sci.USA, 110, 2013
4PP0
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BU of 4pp0 by Molmil
Structure of the PBP NocT-M117N in complex with pyronopaline
Descriptor: 1,2-ETHANEDIOL, 1-[(1S)-4-carbamimidamido-1-carboxybutyl]-5-oxo-D-proline, DI(HYDROXYETHYL)ETHER, ...
Authors:Morera, S, Vigouroux, A.
Deposit date:2014-02-26
Release date:2014-10-22
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.57 Å)
Cite:Agrobacterium uses a unique ligand-binding mode for trapping opines and acquiring a competitive advantage in the niche construction on plant host.
Plos Pathog., 10, 2014
3RLE
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BU of 3rle by Molmil
Crystal Structure of GRASP55 GRASP domain (residues 7-208)
Descriptor: Golgi reassembly-stacking protein 2
Authors:Truschel, S.T, Sengupta, D, Foote, A, Heroux, A, Macbeth, M.R, Linstedt, A.D.
Deposit date:2011-04-19
Release date:2011-05-04
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (1.649 Å)
Cite:Structure of the Membrane-tethering GRASP Domain Reveals a Unique PDZ Ligand Interaction That Mediates Golgi Biogenesis.
J.Biol.Chem., 286, 2011
4POD
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BU of 4pod by Molmil
Structure of Triosephosphate Isomerase I170V mutant human enzyme.
Descriptor: BROMIDE ION, PHOSPHATE ION, POTASSIUM ION, ...
Authors:Amrich, C.G, Aslam, A.A, Heroux, A, VanDemark, A.P.
Deposit date:2014-02-25
Release date:2015-01-14
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.99 Å)
Cite:Triosephosphate isomerase I170V alters catalytic site, enhances stability and induces pathology in a Drosophila model of TPI deficiency.
Biochim.Biophys.Acta, 1852, 2015
4POC
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BU of 4poc by Molmil
Structure of Triosephosphate Isomerase Wild Type human enzyme.
Descriptor: BROMIDE ION, PHOSPHATE ION, POTASSIUM ION, ...
Authors:Amrich, C.G, Aslam, A.A, Heroux, A, VanDemark, A.P.
Deposit date:2014-02-25
Release date:2015-01-14
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.601 Å)
Cite:Triosephosphate isomerase I170V alters catalytic site, enhances stability and induces pathology in a Drosophila model of TPI deficiency.
Biochim.Biophys.Acta, 1852, 2015
3PMF
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BU of 3pmf by Molmil
Crystal structure of Staphylococcal nuclease variant Delta+PHS V23A at cryogenic temperature
Descriptor: CALCIUM ION, THYMIDINE-3',5'-DIPHOSPHATE, Thermonuclease
Authors:Caro, J.A, Clark, I, Schlessman, J.L, Garcia-Moreno E, B, Heroux, A.
Deposit date:2010-11-16
Release date:2011-11-16
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Cavities determine the pressure unfolding of proteins.
Proc.Natl.Acad.Sci.USA, 109, 2012
4POW
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BU of 4pow by Molmil
Structure of the PBP NocT in complex with pyronopaline
Descriptor: 1,2-ETHANEDIOL, 1-[(1S)-4-carbamimidamido-1-carboxybutyl]-5-oxo-D-proline, Nopaline-binding periplasmic protein
Authors:Morera, S, Vigouroux, A.
Deposit date:2014-02-26
Release date:2014-10-22
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Agrobacterium uses a unique ligand-binding mode for trapping opines and acquiring a competitive advantage in the niche construction on plant host.
Plos Pathog., 10, 2014
3QOJ
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BU of 3qoj by Molmil
Cryogenic structure of Staphylococcal nuclease variant D+PHS/V23K
Descriptor: CALCIUM ION, THYMIDINE-3',5'-DIPHOSPHATE, Thermonuclease
Authors:Robinson, A.C, Schlessman, J.L, Heroux, A, Garcia-Moreno E, B.
Deposit date:2011-02-10
Release date:2011-03-16
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Determinants of pKa values of internal ionizable groups: properties of ion pairs in the protein core
To be Published
4I8Q
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BU of 4i8q by Molmil
Structure of the aminoaldehyde dehydrogenase 1 E260A mutant from Solanum lycopersicum (SlAMADH1-E260A)
Descriptor: 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, ...
Authors:Morera, S, Vigouroux, A, Kopecny, D.
Deposit date:2012-12-04
Release date:2013-02-20
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:Plant ALDH10 family: identifying critical residues for substrate specificity and trapping a thiohemiacetal intermediate.
J.Biol.Chem., 288, 2013

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