PDB Search results for query - 日本蛋白質結構資料庫

PDB: 106 results

Cryo-EM structure of Plasmodium vivax hexokinase (Open state)
Descriptor:	Phosphotransferase
Authors:	Srivastava, S.S, Darling, J.E, Suryadi, J, Morris, J.C, Drew, M.E, Subramaniam, S.
Deposit date:	2020-02-26
Release date:	2020-05-06
Last modified:	2024-03-06
Method:	ELECTRON MICROSCOPY (3.3 Å)
Cite:	Plasmodium vivax and human hexokinases share similar active sites but display distinct quaternary architectures Iucrj, 7, 2020

6VYG

Cryo-EM structure of Plasmodium vivax hexokinase (Closed state)
Descriptor:	Phosphotransferase
Authors:	Srivastava, S.S, Darling, J.E, Suryadi, J, Morris, J.C, Drew, M.E, Subramaniam, S.
Deposit date:	2020-02-26
Release date:	2020-05-06
Method:	ELECTRON MICROSCOPY (3.5 Å)
Cite:	Plasmodium vivax and human hexokinases share similar active sites but display distinct quaternary architectures Iucrj, 7, 2020

5HT7

Crystal structure of a transition-metal-ion-binding betagamma-crystallin from Methanosaeta thermophila
Descriptor:	FE (II) ION, Uncharacterized protein
Authors:	Srivastava, S.S, Sankaranarayanan, R.
Deposit date:	2016-01-26
Release date:	2017-02-01
Last modified:	2024-03-20
Method:	X-RAY DIFFRACTION (1.862 Å)
Cite:	A Transition Metal-Binding, Trimeric beta gamma-Crystallin from Methane-Producing Thermophilic Archaea, Methanosaeta thermophila Biochemistry, 56, 2017

5H4E

Crystal structure of a beta-1,3-glucanase domain (GH64) from Clostridium beijerinckii
Descriptor:	beta 1-3 glucanase
Authors:	Srivastava, S.S, Sankaranarayanan, R.
Deposit date:	2016-10-31
Release date:	2017-11-08
Last modified:	2023-11-08
Method:	X-RAY DIFFRACTION (1.863 Å)
Cite:	Crystal structure of a beta-1,3-glucanase domain (GH64) from Clostridium beijerinckii To Be Published

5Z6D

Crystal structure of Abundant Perithecial Protein (APP) from Neurospora crassa
Descriptor:	DUF1881 domain-containing protein
Authors:	Srivastava, S.S, Sankaranarayanan, R.
Deposit date:	2018-01-22
Release date:	2019-01-23
Last modified:	2024-03-27
Method:	X-RAY DIFFRACTION (1.6 Å)
Cite:	Interface interactions between beta gamma-crystallin domain and Ig-like domain render Ca2+-binding site inoperative in abundant perithecial protein of Neurospora crassa. Mol.Microbiol., 110, 2018

5Z6E

Crystal structure of a beta gamma-crystallin domain of Abundant Perithecial Protein (APP) from Neurospora crassa in the Ca2+-bound form
Descriptor:	CALCIUM ION, DUF1881 domain-containing protein, POTASSIUM ION
Authors:	Srivastava, S.S, Sankaranarayanan, R.
Deposit date:	2018-01-22
Release date:	2019-01-23
Last modified:	2023-11-22
Method:	X-RAY DIFFRACTION (1.864 Å)
Cite:	Interface interactions between beta gamma-crystallin domain and Ig-like domain render Ca2+-binding site inoperative in abundant perithecial protein of Neurospora crassa. Mol.Microbiol., 110, 2018

3Q8Y

Crystal structure of Staphylococcus aureus nucleoside diphosphate kinase complexed with ADP and Vanadate
Descriptor:	ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, Nucleoside diphosphate kinase, ...
Authors:	Srivastava, S.K, Rajasree, K, Gopal, B.
Deposit date:	2011-01-07
Release date:	2011-07-27
Last modified:	2023-11-01
Method:	X-RAY DIFFRACTION (2.7 Å)
Cite:	Conformational basis for substrate recognition and regulation of catalytic activity in Staphylococcus aureus nucleoside di-phosphate kinase. Biochim.Biophys.Acta, 2011

3Q8V

Crystal structure of Staphylococcus aureus nucleoside diphosphate kinase complexed with UDP
Descriptor:	MAGNESIUM ION, Nucleoside diphosphate kinase, URIDINE-5'-DIPHOSPHATE
Authors:	Srivastava, S.K, Rajasree, K, Gopal, B.
Deposit date:	2011-01-07
Release date:	2011-07-27
Last modified:	2023-11-01
Method:	X-RAY DIFFRACTION (2.5 Å)
Cite:	Conformational basis for substrate recognition and regulation of catalytic activity in Staphylococcus aureus nucleoside di-phosphate kinase. Biochim.Biophys.Acta, 2011

3Q89

Crystal structure of Staphylococcus aureus nucleoside diphosphate kinase complexed with CDP
Descriptor:	CYTIDINE-5'-DIPHOSPHATE, MAGNESIUM ION, Nucleoside diphosphate kinase
Authors:	Srivastava, S.K, Rajasree, K, Gopal, B.
Deposit date:	2011-01-06
Release date:	2011-07-27
Last modified:	2023-11-01
Method:	X-RAY DIFFRACTION (2.9 Å)
Cite:	Conformational basis for substrate recognition and regulation of catalytic activity in Staphylococcus aureus nucleoside di-phosphate kinase. Biochim.Biophys.Acta, 2011

3Q8U

Crystal structure of Staphylococcus aureus nucleoside diphosphate kinase complexed with ADP
Descriptor:	ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, Nucleoside diphosphate kinase
Authors:	Srivastava, S.K, Rajasree, K, Gopal, B.
Deposit date:	2011-01-07
Release date:	2011-07-27
Last modified:	2023-11-01
Method:	X-RAY DIFFRACTION (2.22 Å)
Cite:	Conformational basis for substrate recognition and regulation of catalytic activity in Staphylococcus aureus nucleoside di-phosphate kinase. Biochim.Biophys.Acta, 1814, 2011

3Q86

Crystal structure of Staphylococcus aureus nucleoside diphosphate kinase complexed with GTP
Descriptor:	GUANOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, Nucleoside diphosphate kinase
Authors:	Srivastava, S.K, Rajasree, K, Gopal, B.
Deposit date:	2011-01-06
Release date:	2011-07-27
Last modified:	2023-11-01
Method:	X-RAY DIFFRACTION (2.38 Å)
Cite:	Conformational basis for substrate recognition and regulation of catalytic activity in Staphylococcus aureus nucleoside di-phosphate kinase. Biochim.Biophys.Acta, 1814, 2011

3Q83

Crystal structure of Staphylococcus aureus nucleoside diphosphate kinase
Descriptor:	Nucleoside diphosphate kinase
Authors:	Srivastava, S.K, Rajasree, K, Gopal, B.
Deposit date:	2011-01-06
Release date:	2011-07-27
Last modified:	2023-11-01
Method:	X-RAY DIFFRACTION (2.5 Å)
Cite:	Conformational basis for substrate recognition and regulation of catalytic activity in Staphylococcus aureus nucleoside di-phosphate kinase. Biochim.Biophys.Acta, 1814, 2011

1ZAU

Adenylation domain of NAD+ dependent DNA ligase from M.tuberculosis
Descriptor:	ADENOSINE MONOPHOSPHATE, DNA ligase
Authors:	Srivastava, S.K, Ramachandran, R.
Deposit date:	2005-04-07
Release date:	2005-07-05
Last modified:	2024-02-14
Method:	X-RAY DIFFRACTION (3.15 Å)
Cite:	NAD+-dependent DNA Ligase (Rv3014c) from Mycobacterium tuberculosis: CRYSTAL STRUCTURE OF THE ADENYLATION DOMAIN AND IDENTIFICATION OF NOVEL INHIBITORS J.Biol.Chem., 280, 2005

4BXI

Crystal structure of ATP binding domain of AgrC from Staphylococcus aureus
Descriptor:	(4S)-2-METHYL-2,4-PENTANEDIOL, ACCESSORY GENE REGULATOR PROTEIN C, ACETATE ION, ...
Authors:	Srivastava, S.K, Rajasree, K, Gopal, B.
Deposit date:	2013-07-12
Release date:	2014-06-04
Last modified:	2023-12-20
Method:	X-RAY DIFFRACTION (2.2 Å)
Cite:	Influence of the Agrc-Agra Complex in the Response Time of Staphylococcus Aureus Quorum Sensing J.Bacteriol., 196, 2014

3SNY

Crystal structure of a mutant T82R of a betagamma-crystallin domain from Clostridium beijerinckii
Descriptor:	CALCIUM ION, Clostrillin, SULFATE ION
Authors:	Srivastava, S.S, Sankaranarayanan, R.
Deposit date:	2011-06-29
Release date:	2011-11-16
Last modified:	2023-11-01
Method:	X-RAY DIFFRACTION (1.85 Å)
Cite:	Decoding the molecular design principles underlying Ca(2+) binding to beta gamma-crystallin motifs J.Mol.Biol., 415, 2012

3SO1

Crystal structure of a double mutant T41S T82S of a betagamma-crystallin domain from Clostridium beijerinckii
Descriptor:	CALCIUM ION, Clostrillin, SULFATE ION
Authors:	Srivastava, S.S, Sankaranarayanan, R.
Deposit date:	2011-06-29
Release date:	2011-11-16
Last modified:	2023-11-01
Method:	X-RAY DIFFRACTION (1.85 Å)
Cite:	Decoding the molecular design principles underlying Ca(2+) binding to beta gamma-crystallin motifs J.Mol.Biol., 415, 2012

3SO0

Crystal structure of a mutant T41S of a betagamma-crystallin domain from Clostridium beijerinckii
Descriptor:	CALCIUM ION, Clostrillin
Authors:	Srivastava, S.S, Sankaranarayanan, R.
Deposit date:	2011-06-29
Release date:	2011-11-16
Last modified:	2023-11-01
Method:	X-RAY DIFFRACTION (1.93 Å)
Cite:	Decoding the molecular design principles underlying Ca(2+) binding to beta gamma-crystallin motifs J.Mol.Biol., 415, 2012

3SNZ

Crystal structure of a mutant W39D of a betagamma-crystallin domain from Clostridium beijerinckii
Descriptor:	CALCIUM ION, Clostrillin
Authors:	Srivastava, S.S, Sankaranarayanan, R.
Deposit date:	2011-06-29
Release date:	2011-11-16
Last modified:	2023-11-01
Method:	X-RAY DIFFRACTION (2 Å)
Cite:	Decoding the molecular design principles underlying Ca(2+) binding to beta gamma-crystallin motifs J.Mol.Biol., 415, 2012

5FYD

Structural and biochemical insights into 7beta-hydroxysteroid dehydrogenase stereoselectivity
Descriptor:	GLYCEROL, OXIDOREDUCTASE, SHORT CHAIN DEHYDROGENASE/REDUCTASE FAMILY PROTEIN
Authors:	Savino, S, Ferrandi, E, Forneris, F, Rovida, S, Riva, S, Monti, D, Mattevi, A.
Deposit date:	2016-03-07
Release date:	2016-04-06
Last modified:	2024-01-10
Method:	X-RAY DIFFRACTION (1.6 Å)
Cite:	Structural and Biochemical Insights Into 7Beta-Hydroxysteroid Dehydrogenase Stereoselectivity. Proteins, 84, 2016

7SY4

Cryo-EM structure of the SARS-CoV-2 D614G,N501Y,E484K mutant spike protein ectodomain bound to human ACE2 ectodomain (focused refinement of RBD and ACE2)
Descriptor:	2-acetamido-2-deoxy-beta-D-glucopyranose, Processed angiotensin-converting enzyme 2, Spike glycoprotein
Authors:	Zhu, X, Mannar, D, Saville, J.W, Srivastava, S.S, Berezuk, A.M, Zhou, S, Tuttle, K.S, Kim, A, Li, W, Dimitrov, D.S, Subramaniam, S.
Deposit date:	2021-11-24
Release date:	2021-12-29
Last modified:	2022-01-05
Method:	ELECTRON MICROSCOPY (3.35 Å)
Cite:	Structural analysis of receptor binding domain mutations in SARS-CoV-2 variants of concern that modulate ACE2 and antibody binding. Cell Rep, 37, 2021

7SY6

Cryo-EM structure of the SARS-CoV-2 D614G,N501Y,E484K,K417N mutant spike protein ectodomain bound to human ACE2 ectodomain (focused refinement of RBD and ACE2)
Descriptor:	2-acetamido-2-deoxy-beta-D-glucopyranose, Processed angiotensin-converting enzyme 2, Spike glycoprotein
Authors:	Zhu, X, Mannar, D, Saville, J.W, Srivastava, S.S, Berezuk, A.M, Zhou, S, Tuttle, K.S, Kim, A, Li, W, Dimitrov, D.S, Subramaniam, S.
Deposit date:	2021-11-24
Release date:	2021-12-29
Method:	ELECTRON MICROSCOPY (2.81 Å)
Cite:	Structural analysis of receptor binding domain mutations in SARS-CoV-2 variants of concern that modulate ACE2 and antibody binding. Cell Rep, 37, 2021

7SXT

Cryo-EM structure of the SARS-CoV-2 D614G,N501Y mutant spike protein ectodomain
Descriptor:	2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein
Authors:	Zhu, X, Mannar, D, Saville, J.W, Srivastava, S.S, Berezuk, A.M, Zhou, S, Tuttle, K.S, Kim, A, Li, W, Dimitrov, D.S, Subramaniam, S.
Deposit date:	2021-11-24
Release date:	2021-12-29
Last modified:	2022-01-05
Method:	ELECTRON MICROSCOPY (2.31 Å)
Cite:	Structural analysis of receptor binding domain mutations in SARS-CoV-2 variants of concern that modulate ACE2 and antibody binding. Cell Rep, 37, 2021

7SY7

Cryo-EM structure of the SARS-CoV-2 D614G,N501Y,E484K,K417T mutant spike protein ectodomain bound to human ACE2 ectodomain (global refinement)
Descriptor:	2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Processed angiotensin-converting enzyme 2, ...
Authors:	Zhu, X, Mannar, D, Saville, J.W, Srivastava, S.S, Berezuk, A.M, Zhou, S, Tuttle, K.S, Kim, A, Li, W, Dimitrov, D.S, Subramaniam, S.
Deposit date:	2021-11-24
Release date:	2021-12-29
Method:	ELECTRON MICROSCOPY (2.81 Å)
Cite:	Structural analysis of receptor binding domain mutations in SARS-CoV-2 variants of concern that modulate ACE2 and antibody binding. Cell Rep, 37, 2021

7SXS

Cryo-EM structure of the SARS-CoV-2 D614G,L452R mutant spike protein ectodomain
Descriptor:	2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein
Authors:	Zhu, X, Mannar, D, Saville, J.W, Srivastava, S.S, Berezuk, A.M, Zhou, S, Tuttle, K.S, Kim, A, Li, W, Dimitrov, D.S, Subramaniam, S.
Deposit date:	2021-11-24
Release date:	2021-12-29
Last modified:	2022-01-05
Method:	ELECTRON MICROSCOPY (2.64 Å)
Cite:	Structural analysis of receptor binding domain mutations in SARS-CoV-2 variants of concern that modulate ACE2 and antibody binding. Cell Rep, 37, 2021

7SY5

Cryo-EM structure of the SARS-CoV-2 D614G,N501Y,E484K,K417N mutant spike protein ectodomain bound to human ACE2 ectodomain (global refinement)
Descriptor:	2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Processed angiotensin-converting enzyme 2, ...
Authors:	Zhu, X, Mannar, D, Saville, J.W, Srivastava, S.S, Berezuk, A.M, Zhou, S, Tuttle, K.S, Kim, A, Li, W, Dimitrov, D.S, Subramaniam, S.
Deposit date:	2021-11-24
Release date:	2021-12-29
Last modified:	2022-01-05
Method:	ELECTRON MICROSCOPY (2.59 Å)
Cite:	Structural analysis of receptor binding domain mutations in SARS-CoV-2 variants of concern that modulate ACE2 and antibody binding. Cell Rep, 37, 2021

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Total results:	106
Displayed results:	25
Sorted by:	Hit score (from highest)
Deposition authors:	"Riva, S"