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PDB: 65 results

5HOO
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BU of 5hoo by Molmil
Crystal structure of the Mos1 Strand Transfer Complex
Descriptor: MAGNESIUM ION, Mariner Mos1 transposase, Mos1 IR DNA NTS, ...
Authors:Richardson, J.M, Morris, E.R.
Deposit date:2016-01-19
Release date:2016-06-01
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:A bend, flip and trap mechanism for transposon integration.
Elife, 5, 2016
4ULL
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BU of 4ull by Molmil
SOLUTION NMR STRUCTURE OF VEROTOXIN-1 B-SUBUNIT FROM E. COLI, 5 STRUCTURES
Descriptor: Shiga toxin 1B
Authors:Richardson, J.M, Evans, P.D, Homans, S.W, Donohue-Rolfe, A.
Deposit date:1996-12-17
Release date:1997-04-01
Last modified:2019-12-11
Method:SOLUTION NMR
Cite:Solution structure of the carbohydrate-binding B-subunit homopentamer of verotoxin VT-1 from E. coli.
Nat.Struct.Biol., 4, 1997
5NW9
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BU of 5nw9 by Molmil
Crystal structure of the complex of Tdp1 with duplex DNA
Descriptor: DNA (5'-D(P*TP*GP*CP*GP*CP*AP*GP*TP*A)-3'), Tyrosyl-DNA phosphodiesterase 1
Authors:Richardson, J.M, Ruksenaite, E, Morris, E.R.
Deposit date:2017-05-05
Release date:2018-01-10
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.04 Å)
Cite:Structural basis for DNA 3'-end processing by human tyrosyl-DNA phosphodiesterase 1.
Nat Commun, 9, 2018
4R79
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BU of 4r79 by Molmil
Mos1 transposase paired-end complex with left transposon end
Descriptor: MANGANESE (II) ION, Mariner Mos1 transposase, SULFATE ION, ...
Authors:Richardson, J.M.
Deposit date:2014-08-27
Release date:2015-04-22
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Structural Basis for the Inverted Repeat Preferences of mariner Transposases.
J.Biol.Chem., 290, 2015
8AF2
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BU of 8af2 by Molmil
Human Sterol Carrier Protein with unnatural amino acid 2,2'-bipyridine alanine incorporated at position 111
Descriptor: COPPER (II) ION, Enoyl-CoA hydratase 2, FRAGMENT OF TRITON X-100, ...
Authors:Richardson, J.M, Klemencic, E, Jarvis, A.G.
Deposit date:2022-07-15
Release date:2023-08-16
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.51 Å)
Cite:Using BpyAla to generate copper artificial metalloenzymes: a catalytic and structural study.
Catalysis Science And Technology, 14, 2024
4U7B
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BU of 4u7b by Molmil
Crystal structure of a pre-cleavage Mos1 transpososome
Descriptor: DNA (25-MER), DNA (31-MER), Mariner Mos1 transposase, ...
Authors:Richardson, J.M.
Deposit date:2014-07-30
Release date:2015-02-11
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (3.09 Å)
Cite:Structural role of the flanking DNA in mariner transposon excision.
Nucleic Acids Res., 43, 2015
8AF3
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BU of 8af3 by Molmil
Sterol carrier protein Artifical metalloenzyme incorporating Q111C mutation coupled to 2,2'-bipyridine
Descriptor: COPPER (II) ION, Enoyl-CoA hydratase 2, FRAGMENT OF TRITON X-100, ...
Authors:Richardson, J.M, Klemencic, E, Jarvis, A.G.
Deposit date:2022-07-15
Release date:2023-08-16
Last modified:2024-07-10
Method:X-RAY DIFFRACTION (1.52 Å)
Cite:Using BpyAla to generate copper artificial metalloenzymes: a catalytic and structural study.
Catalysis Science And Technology, 14, 2024
3FWU
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BU of 3fwu by Molmil
Crystal structure of Leishmania major MIF1
Descriptor: Macrophage migration inhibitory factor-like protein
Authors:RIchardson, J.M, Walkinshaw, M.D.
Deposit date:2009-01-19
Release date:2009-03-24
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structures of Leishmania major orthologues of macrophage migration inhibitory factor
Biochem.Biophys.Res.Commun., 380, 2009
3HOT
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BU of 3hot by Molmil
Crystal structure of the Mos1 mariner paired end complex with Mn
Descriptor: MANGANESE (II) ION, Mos1 NTS inverted repeat DNA, Mos1 TS inverted repeat DNA, ...
Authors:Richardson, J.M, Walkinshaw, M.D.
Deposit date:2009-06-03
Release date:2009-09-22
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (3.25 Å)
Cite:Molecular architecture of the Mos1 paired-end complex: the structural basis of DNA transposition in a eukaryote
Cell(Cambridge,Mass.), 138, 2009
3HOS
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BU of 3hos by Molmil
Crystal structure of the mariner Mos1 paired end complex with Mg
Descriptor: MAGNESIUM ION, Mos1 NTS inverted repeat DNA, Mos1 TS inverted repeat DNA, ...
Authors:Richardson, J.M, Walkinshaw, M.D.
Deposit date:2009-06-03
Release date:2009-09-22
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:Molecular architecture of the Mos1 paired-end complex: the structural basis of DNA transposition in a eukaryote
Cell(Cambridge,Mass.), 138, 2009
5NWA
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BU of 5nwa by Molmil
Crystal structure of the complex of Tdp1 with duplex DNA
Descriptor: DNA (5'-D(P*AP*AP*TP*GP*CP*GP*CP*AP*TP*TP*A)-3'), Tyrosyl-DNA phosphodiesterase 1
Authors:Richardson, J.M, Ruksenaite, E, Morris, E.R.
Deposit date:2017-05-05
Release date:2018-01-10
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Structural basis for DNA 3'-end processing by human tyrosyl-DNA phosphodiesterase 1.
Nat Commun, 9, 2018
4DH4
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BU of 4dh4 by Molmil
Macrophage migration inhibitory factor Toxoplasma gondii
Descriptor: MIF, SULFATE ION
Authors:Richardson, J.M.
Deposit date:2012-01-27
Release date:2012-11-21
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.82 Å)
Cite:Biochemical and Immunological Characterization of Toxoplasma gondii Macrophage Migration Inhibitory Factor.
J.Biol.Chem., 288, 2013
2F7T
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BU of 2f7t by Molmil
Crystal structure of the catalytic domain of Mos1 mariner transposase
Descriptor: MAGNESIUM ION, Mos1 transposase
Authors:Richardson, J.M, Dawson, A, Taylor, P, Finnegan, D.J, Walkinshaw, M.D.
Deposit date:2005-12-01
Release date:2006-03-28
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Mechanism of Mos1 transposition: insights from structural analysis
Embo J., 25, 2006
1E0F
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BU of 1e0f by Molmil
Crystal structure of the human alpha-thrombin-haemadin complex: an exosite II-binding inhibitor
Descriptor: HAEMADIN, THROMBIN
Authors:Richardson, J.L, Kroeger, B, Hoefken, W, Pereira, P, Huber, R, Bode, W, Fuentes-Prior, P.
Deposit date:2000-03-27
Release date:2000-11-03
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Crystal Structure of the Human Alpha-Thrombin-Haemadin Complex: An Exosite II-Binding Inhibitor
Embo J., 19, 2000
4MDB
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BU of 4mdb by Molmil
Structure of Mos1 transposase catalytic domain and Raltegravir with Mg
Descriptor: MAGNESIUM ION, Mariner Mos1 transposase, N-(4-fluorobenzyl)-5-hydroxy-1-methyl-2-(1-methyl-1-{[(5-methyl-1,3,4-oxadiazol-2-yl)carbonyl]amino}ethyl)-6-oxo-1,6-di hydropyrimidine-4-carboxamide
Authors:Richardson, J.M.
Deposit date:2013-08-22
Release date:2014-01-22
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structural Basis of Mos1 Transposase Inhibition by the Anti-retroviral Drug Raltegravir.
Acs Chem.Biol., 9, 2014
4MDA
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BU of 4mda by Molmil
Structure of Mos1 transposase catalytic domain and Raltegravir with Mn
Descriptor: MANGANESE (II) ION, Mariner Mos1 transposase, N-(4-fluorobenzyl)-5-hydroxy-1-methyl-2-(1-methyl-1-{[(5-methyl-1,3,4-oxadiazol-2-yl)carbonyl]amino}ethyl)-6-oxo-1,6-di hydropyrimidine-4-carboxamide
Authors:Richardson, J.M.
Deposit date:2013-08-22
Release date:2014-01-22
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structural Basis of Mos1 Transposase Inhibition by the Anti-retroviral Drug Raltegravir.
Acs Chem.Biol., 9, 2014
1I53
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BU of 1i53 by Molmil
RE(I)-TRICARBONYL DIIMINE (Q107H)) AZURIN
Descriptor: 4,7-DIMETHYL-[1,10]PHENANTHROLINE, AZURIN, COPPER (II) ION, ...
Authors:Di Bilio, A.J, Crane, B.R, Wehbi, W.A, Kiser, C.N, Abu-Omar, M.M, Carlos, R.M, Richards, J.H, Winkler, J.R, Gray, H.B.
Deposit date:2001-02-24
Release date:2001-10-17
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Properties of photogenerated tryptophan and tyrosyl radicals in structurally characterized proteins containing rhenium(I) tricarbonyl diimines.
J.Am.Chem.Soc., 123, 2001
4C83
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BU of 4c83 by Molmil
Crystal Structure of the IgG2a LPT3 in complex with an 8-sugar inner core analogue of Neisseria meningitidis
Descriptor: 2-acetamido-2-deoxy-alpha-D-glucopyranose-(1-2)-L-glycero-alpha-D-manno-heptopyranose-(1-3)-[beta-D-glucopyranose-(1-4)]L-glycero-alpha-D-manno-heptopyranose-(1-5)-3-deoxy-alpha-D-manno-oct-2-ulopyranosonic acid, LPT3 HEAVY CHAIN, LPT3 LIGHT CHAIN, ...
Authors:Parker, M.J, Gomery, K, Richard, G, Mackenzie, C.R, Cox, A.D, Richards, J.C, Evans, S.V.
Deposit date:2013-09-29
Release date:2014-02-12
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.69 Å)
Cite:Structural Basis for Selective Cross-Reactivity in a Bactericidal Antibody Against Inner Core Lipooligosaccharide from Neisseria Meningitidis.
Glycobiology, 24, 2014
2VA8
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BU of 2va8 by Molmil
DNA Repair Helicase Hel308
Descriptor: SKI2-TYPE HELICASE, SULFATE ION
Authors:Johnson, K.A, Richards, J, Liu, H, McMahon, S, Oke, M, Carter, L, Naismith, J.H, White, M.F.
Deposit date:2007-08-30
Release date:2008-01-15
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structure of the DNA Repair Helicase Hel308 Reveals DNA Binding and Autoinhibitory Domains.
J.Biol.Chem., 283, 2008
5I3I
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BU of 5i3i by Molmil
Structure-Function Studies on Role of Hydrophobic Clamping of a Basic Glutamate in Catalysis by Triosephosphate Isomerase
Descriptor: 2-PHOSPHOGLYCOLIC ACID, Triosephosphate isomerase, glycosomal
Authors:Drake, E.J, Gulick, A.M, Richard, J.P, Zhai, X, Kim, K, Reinhardt, C.J.
Deposit date:2016-02-10
Release date:2016-05-18
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structure-Function Studies of Hydrophobic Residues That Clamp a Basic Glutamate Side Chain during Catalysis by Triosephosphate Isomerase.
Biochemistry, 55, 2016
5I3H
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BU of 5i3h by Molmil
Structure-Function Studies on Role of Hydrophobic Clamping of a Basic Glutamate in Catalysis by Triosephosphate Isomerase
Descriptor: 2-PHOSPHOGLYCOLIC ACID, POTASSIUM ION, Triosephosphate isomerase, ...
Authors:Drake, E.J, Gulick, A.M, Richard, J.P, Zhai, X, Kim, K, Reinhardt, C.J.
Deposit date:2016-02-10
Release date:2016-05-18
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Structure-Function Studies of Hydrophobic Residues That Clamp a Basic Glutamate Side Chain during Catalysis by Triosephosphate Isomerase.
Biochemistry, 55, 2016
5I3F
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BU of 5i3f by Molmil
Structure-Function Studies on Role of Hydrophobic Clamping of a Basic Glutamate in Catalysis by Triosephosphate Isomerase
Descriptor: Triosephosphate isomerase, glycosomal
Authors:Drake, E.J, Gulick, A.M, Richard, J.P, Zhai, X, Kim, K, Reinhardt, C.J.
Deposit date:2016-02-10
Release date:2016-05-18
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.72 Å)
Cite:Structure-Function Studies of Hydrophobic Residues That Clamp a Basic Glutamate Side Chain during Catalysis by Triosephosphate Isomerase.
Biochemistry, 55, 2016
5I3J
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BU of 5i3j by Molmil
Structure-Function Studies on Role of Hydrophobic Clamping of a Basic Glutamate in Catalysis by Triosephosphate Isomerase
Descriptor: SODIUM ION, Triosephosphate isomerase, glycosomal
Authors:Drake, E.J, Gulick, A.M, Richard, J.P, Zhai, X, Kim, K, Reinhardt, C.J.
Deposit date:2016-02-10
Release date:2016-05-18
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structure-Function Studies of Hydrophobic Residues That Clamp a Basic Glutamate Side Chain during Catalysis by Triosephosphate Isomerase.
Biochemistry, 55, 2016
4PR6
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BU of 4pr6 by Molmil
A Second Look at the HDV Ribozyme Structure and Dynamics.
Descriptor: HDV RIBOZYME SELF-CLEAVED, MAGNESIUM ION, U1 small nuclear ribonucleoprotein A
Authors:Kapral, G.J, Jain, S, Noeske, J, Doudna, J.A, Richardson, D.C, Richardson, J.S.
Deposit date:2014-03-05
Release date:2014-10-29
Last modified:2014-11-26
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:New tools provide a second look at HDV ribozyme structure, dynamics and cleavage.
Nucleic Acids Res., 42, 2014
4PRF
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BU of 4prf by Molmil
A Second Look at the HDV Ribozyme Structure and Dynamics.
Descriptor: Hepatitis Delta virus ribozyme, STRONTIUM ION, U1 small nuclear ribonucleoprotein A
Authors:Kapral, G.J, Jain, S, Noeske, J, Doudna, J.A, Richardson, D.C, Richardson, J.S.
Deposit date:2014-03-05
Release date:2014-10-29
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.395 Å)
Cite:New tools provide a second look at HDV ribozyme structure, dynamics and cleavage.
Nucleic Acids Res., 42, 2014

 

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