Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 37 件

2FGL
DownloadVisualize
BU of 2fgl by Molmil
An alkali thermostable F/10 xylanase from alkalophilic Bacillus sp. NG-27
分子名称: MAGNESIUM ION, alkaline thermostable endoxylanase, alpha-D-xylopyranose, ...
著者Ramakumar, S, Manikandan, K, Bhardwaj, A, Reddy, V.S, Lokanath, N.K, Ghosh, A.
登録日2005-12-22
公開日2006-09-26
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Crystal structures of native and xylosaccharide-bound alkali thermostable xylanase from an alkalophilic Bacillus sp. NG-27: structural insights into alkalophilicity and implications for adaptation to polyextreme conditions.
Protein Sci., 15, 2006
2F8Q
DownloadVisualize
BU of 2f8q by Molmil
An alkali thermostable F/10 xylanase from alkalophilic Bacillus sp. NG-27
分子名称: MAGNESIUM ION, alkaline thermostable endoxylanase
著者Ramakumar, S, Manikandan, K, Bhardwaj, A, Ghosh, A, Reddy, V.S.
登録日2005-12-03
公開日2006-09-26
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Crystal structures of native and xylosaccharide-bound alkali thermostable xylanase from an alkalophilic Bacillus sp. NG-27: structural insights into alkalophilicity and implications for adaptation to polyextreme conditions.
Protein Sci., 15, 2006
6ID6
DownloadVisualize
BU of 6id6 by Molmil
Crystal structure of Rv0731c from Mycobacterium tuberculosis at 1.63 Angstroms.
分子名称: MAGNESIUM ION, Putative S-adenosyl-L-methionine-dependent methyltransferase Rv0731c, TRIETHYLENE GLYCOL
著者Bansia, H, Kalladi, S.M, Nagaraja, V, Ramakumar, S.
登録日2018-09-08
公開日2019-09-11
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (1.63 Å)
主引用文献Crystal structure of Rv0731c from Mycobacterium tuberculosis.
To Be Published
8HKR
DownloadVisualize
BU of 8hkr by Molmil
Crystal Structure of Histone H3 Lysine 79 (H3K79) Methyltransferase Rv2067c from Mycobacterium tuberculosis
分子名称: PHOSPHATE ION, Protein lysine methyltransferase, S-ADENOSYL-L-HOMOCYSTEINE
著者Dadireddy, V, Singh, P.R, Kalladi, S.M, Valakunja, N, Ramakumar, S.
登録日2022-11-28
公開日2023-10-18
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献The Mycobacterium tuberculosis methyltransferase Rv2067c manipulates host epigenetic programming to promote its own survival.
Nat Commun, 14, 2023
2PBQ
DownloadVisualize
BU of 2pbq by Molmil
Crystal structure of molybdenum cofactor biosynthesis (aq_061) From aquifex aeolicus VF5
分子名称: Molybdenum cofactor biosynthesis MOG
著者Jeyakanthan, J, Mahesh, S, Kanaujia, S.P, Ramakumar, S, Sekar, K, Agari, Y, Ebihara, A, Kuramitsu, S, Shinkai, A, Shiro, Y, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2007-03-29
公開日2007-10-02
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Crystal structure of molybdenum cofactor biosynthesis (aq_061) from aquifex aeolicus VF5
to be published
4DKY
DownloadVisualize
BU of 4dky by Molmil
Crystal structure Analysis of N terminal region containing the dimerization domain and DNA binding domain of HU protein(Histone like protein-DNA binding) from Mycobacterium tuberculosis [H37Ra]
分子名称: DNA-binding protein HU homolog, MANGANESE (II) ION
著者Bhowmick, T, Ramagopal, U.A, Ghosh, S, Nagaraja, V, Ramakumar, S.
登録日2012-02-05
公開日2013-02-06
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.478 Å)
主引用文献Targeting Mycobacterium tuberculosis nucleoid-associated protein HU with structure-based inhibitors
Nat Commun, 5, 2014
8IYM
DownloadVisualize
BU of 8iym by Molmil
Crystal structure of a protein acetyltransferase, HP0935
分子名称: 1,2-ETHANEDIOL, N-acetyltransferase domain-containing protein, POTASSIUM ION, ...
著者Dadireddy, V, Mahanta, P, Kumar, A, Desirazu, R.N, Ramakumar, S.
登録日2023-04-05
公開日2024-04-10
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Crystal structure of a protein acetyltransferase, HP0935
To be published
5L0Z
DownloadVisualize
BU of 5l0z by Molmil
Crystal Structure of AdoMet bound rRNA methyltransferase from Sinorhizobium meliloti
分子名称: COBALT (II) ION, Probable RNA methyltransferase, TrmH family, ...
著者Dey, D, Hegde, R.P, Almo, S.C, Ramakumar, S, Ramagopal, U.A.
登録日2016-07-28
公開日2017-08-02
最終更新日2019-11-20
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献Crystal Structure of AdoMet bound rRNA methyltransferase from Sinorhizobium meliloti
To Be Published
1C74
DownloadVisualize
BU of 1c74 by Molmil
Structure of the double mutant (K53,56M) of phospholipase A2
分子名称: CALCIUM ION, PHOSPHOLIPASE A2
著者Sekar, K, Tsai, M.D, Jain, M.K, Ramakumar, S.
登録日2000-01-22
公開日2000-07-22
最終更新日2023-08-09
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Structural basis of the anionic interface preference and k*cat activation of pancreatic phospholipase A2.
Biochemistry, 39, 2000
8IYO
DownloadVisualize
BU of 8iyo by Molmil
Crystal structure of a protein acetyltransferase, HP0935, acetyl-CoA bound form
分子名称: ACETYL COENZYME *A, N-acetyltransferase domain-containing protein
著者Dadireddy, V, Mahanta, P, Kumar, A, Desirazu, R.N, Ramakumar, S.
登録日2023-04-05
公開日2024-04-10
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Crystal structure of a protein acetyltransferase, HP0935, acetyl-CoA bound form
To be published
1TUX
DownloadVisualize
BU of 1tux by Molmil
HIGH RESOLUTION CRYSTAL STRUCTURE OF A THERMOSTABLE XYLANASE FROM THERMOASCUS AURANTIACUS
分子名称: XYLANASE
著者Natesh, R, Bhanumoorthy, P, Vithayathil, P.J, Sekar, K, Ramakumar, S, Viswamitra, M.A.
登録日1998-10-29
公開日1999-07-22
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Crystal structure at 1.8 A resolution and proposed amino acid sequence of a thermostable xylanase from Thermoascus aurantiacus.
J.Mol.Biol., 288, 1999
5KZK
DownloadVisualize
BU of 5kzk by Molmil
Crystal Structure of rRNA methyltransferase from Sinorhizobium meliloti
分子名称: COBALT (II) ION, Probable RNA methyltransferase, TrmH family, ...
著者Dey, D, Hegde, R.P, Almo, S.C, Ramakumar, S, Ramagopal, U.A, New York Structural Genomics Research Consortium (NYSGRC)
登録日2016-07-25
公開日2017-08-02
最終更新日2019-11-20
実験手法X-RAY DIFFRACTION (2.28 Å)
主引用文献Crystal Structure of rRNA methyltransferase from Sinorhizobium meliloti
To Be Published
2QQ1
DownloadVisualize
BU of 2qq1 by Molmil
Crystal Structure Of Molybdenum Cofactor Biosynthesis (aq_061) Other Form From Aquifex Aeolicus Vf5
分子名称: Molybdenum cofactor biosynthesis MOG
著者Jeyakanthan, J, Mahesh, S, Kanaujia, S.P, Ramakumar, S, Sekar, K, Agari, Y, Ebihara, A, Kuramitsu, S, Shinkai, A, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2007-07-26
公開日2008-07-29
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Crystal Structure Of Molybdenum Cofactor Biosynthesis (aq_061) Other Form From Aquifex Aeolicus Vf5
To be Published
5GO5
DownloadVisualize
BU of 5go5 by Molmil
Structure of sortase E from Streptomyces avermitilis
分子名称: GLYCINE, SULFATE ION, sortase
著者Das, S, Pawale, V.S, Dadireddy, V, Roy, R.P, Ramakumar, S.
登録日2016-07-26
公開日2017-03-15
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.65 Å)
主引用文献Structure and specificity of a new class of Ca2+-independent housekeeping sortase from Streptomyces avermitilis provide insights into its non-canonical substrate preference.
J. Biol. Chem., 292, 2017
1I1X
DownloadVisualize
BU of 1i1x by Molmil
1.11 A ATOMIC RESOLUTION STRUCTURE OF A THERMOSTABLE XYLANASE FROM THERMOASCUS AURANTIACUS
分子名称: ENDO-1,4-BETA-XYLANASE
著者Natesh, R, Ramakumar, S, Viswamitra, M.A.
登録日2001-02-04
公開日2003-01-07
最終更新日2023-08-09
実験手法X-RAY DIFFRACTION (1.11 Å)
主引用文献Thermostable xylanase from Thermoascus aurantiacus at ultrahigh resolution (0.89 A) at 100 K and atomic resolution (1.11 A) at 293 K refined anisotropically to small-molecule accuracy.
Acta Crystallogr.,Sect.D, 59, 2003
5GO6
DownloadVisualize
BU of 5go6 by Molmil
Structure of sortase E T196V mutant from Streptomyces avermitilis
分子名称: Putative secreted protein, SULFATE ION
著者Das, S, Pawale, V.S, Dadireddy, V, Roy, R.P, Ramakumar, S.
登録日2016-07-26
公開日2017-07-26
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Structure of sortase E T196V mutant from Streptomyces avermitilis
To Be Published
1I1W
DownloadVisualize
BU of 1i1w by Molmil
0.89A Ultra high resolution structure of a Thermostable Xylanase from Thermoascus Aurantiacus
分子名称: ACETONE, ENDO-1,4-BETA-XYLANASE, ETHANOL, ...
著者Natesh, R, Ramakumar, S, Viswamitra, M.A.
登録日2001-02-04
公開日2003-01-07
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (0.89 Å)
主引用文献Thermostable xylanase from Thermoascus aurantiacus at ultrahigh resolution (0.89 A) at 100 K and atomic resolution (1.11 A) at 293 K refined anisotropically to small-molecule accuracy.
Acta Crystallogr.,Sect.D, 59, 2003
2Q3N
DownloadVisualize
BU of 2q3n by Molmil
Agglutinin from Abrus Precatorius (APA-I)
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, Agglutinin-1 A chain, Agglutinin-1 B chain
著者Bagaria, A, Surendranath, K, Ramagopal, U.A, Ramakumar, S, Karande, A.A.
登録日2007-05-30
公開日2007-06-26
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (3.5 Å)
主引用文献Structure-Function Analysis and Insights into the Reduced Toxicity of Abrus precatorius Agglutinin I in Relation to Abrin.
J.Biol.Chem., 281, 2006
1VRZ
DownloadVisualize
BU of 1vrz by Molmil
Helix turn helix motif
分子名称: ACETATE ION, DE NOVO DESIGNED 21 RESIDUE PEPTIDE
著者Rudresh, Ramakumar, S, Ramagopal, U.A, Inai, Y, Sahal, D.
登録日2005-10-14
公開日2005-11-01
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (1.05 Å)
主引用文献De Novo Design and Characterization of a Helical Hairpin Eicosapeptide; Emergence of an Anion Receptor in the Linker Region.
Structure, 12, 2004
4O8L
DownloadVisualize
BU of 4o8l by Molmil
Structure of sortase A from Streptococcus pneumoniae
分子名称: Sortase
著者Misra, A, Biswas, T, Das, S, Marathe, U, Roy, R.P, Ramakumar, S.
登録日2013-12-28
公開日2015-01-14
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Structure of sortase A from Streptococcus pneumoniae
To be Published
5EB8
DownloadVisualize
BU of 5eb8 by Molmil
Crystal structure of aromatic mutant (F4W) of an alkali thermostable GH10 xylanase from Bacillus sp. NG-27
分子名称: Beta-xylanase, MAGNESIUM ION, SODIUM ION
著者Mahanta, P, Bhardwaj, A, Reddy, V.S, Ramakumar, S.
登録日2015-10-18
公開日2016-10-19
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.22 Å)
主引用文献Crystal structure of aromatic mutant (F4W) of an alkali thermostable GH10 xylanase from Bacillus sp. NG-27
To Be Published
5EBA
DownloadVisualize
BU of 5eba by Molmil
Crystal structure of aromatic mutant (Y343A) of an alkali thermostable GH10 xylanase from Bacillus sp. NG-27
分子名称: Beta-xylanase, MAGNESIUM ION, SODIUM ION
著者Mahanta, P, Bhardwaj, A, Reddy, V.S, Ramakumar, S.
登録日2015-10-18
公開日2016-10-19
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Crystal structure of aromatic mutant (Y343A) of an alkali thermostable GH10 xylanase from Bacillus sp. NG-27
To Be Published
5EFF
DownloadVisualize
BU of 5eff by Molmil
Crystal structure of an aromatic mutant (F4A) of an alkali thermostable GH10 xylanase from Bacillus sp. NG-27
分子名称: Beta-xylanase, CHLORIDE ION, MAGNESIUM ION, ...
著者Mahanta, P, Bhardwaj, A, Reddy, V.S, Ramakumar, S.
登録日2015-10-23
公開日2016-10-26
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2.23 Å)
主引用文献Crystal structure of an aromatic mutant (F4A) of an alkali thermostable GH10 xylanase from Bacillus sp. NG-27
To Be Published
5Z3J
DownloadVisualize
BU of 5z3j by Molmil
Crystal Structure of Abrin A chain (Recombinant) in complex with Nicotinamide at 1.7 Angstroms
分子名称: Abrin A-chain, IMIDAZOLE, NICOTINAMIDE
著者Bansia, H, Karande, A.A, Ramakumar, S.
登録日2018-01-08
公開日2019-01-02
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Structural basis for neutralization of cytotoxic abrin by monoclonal antibody D6F10.
FEBS J., 286, 2019
5Z3I
DownloadVisualize
BU of 5z3i by Molmil
Crystal Structure of Abrin A chain (Recombinant) in complex with Adenine at 1.65 Angstroms
分子名称: ADENINE, Abrin A-chain
著者Bansia, H, Karande, A.A, Ramakumar, S.
登録日2018-01-08
公開日2019-01-02
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.65 Å)
主引用文献Structural basis for neutralization of cytotoxic abrin by monoclonal antibody D6F10.
FEBS J., 286, 2019

 

12>

220113

件を2024-05-22に公開中

PDB statisticsPDBj update infoContact PDBjnumon