Loading
PDBj
English日本語简体中文繁體中文한국어
✖
ﾒﾆｭｰPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 385 件
4X5V
DownloadVisualize
BU of 4x5v by Molmil
Crystal structure of the post-catalytic nick complex of DNA polymerase lambda with a templating A and incorporated 8-oxo-dGMP
分子名称: CITRIC ACID, DNA (5'-D(*CP*AP*GP*TP*AP*CP*(8OG))-3'), DNA (5'-D(*CP*GP*GP*CP*AP*GP*TP*AP*CP*TP*G)-3'), ...
著者Burak, M.J, Guja, K.E, Garcia-Diaz, M.
登録日2014-12-05
公開日2015-10-28
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (2.15 Å)
主引用文献Nucleotide binding interactions modulate dNTP selectivity and facilitate 8-oxo-dGTP incorporation by DNA polymerase lambda.
Nucleic Acids Res., 43, 2015
2F9R
DownloadVisualize
BU of 2f9r by Molmil
Crystal structure of the inactive state of the Smase I, a sphingomyelinase D from Loxosceles laeta venom
分子名称: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, MAGNESIUM ION, Sphingomyelinase D 1
著者Murakami, M.T, Gabdoulkhakov, A, Fernandes-Pedrosa, M.F, Betzel, C, Tambourgi, D.V, Arni, R.K.
登録日2005-12-06
公開日2006-06-27
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Structural basis for metal ion coordination and the catalytic mechanism of sphingomyelinases D.
J.Biol.Chem., 280, 2005
4E2D
DownloadVisualize
BU of 4e2d by Molmil
Structure of the old yellow enzyme from Trypanosoma cruzi
分子名称: DIMETHYL SULFOXIDE, FLAVIN MONONUCLEOTIDE, Old Yellow Protein
著者Murakami, M.T, Rodrigues, N.C, Gava, L.M, Canduri, F, Oliva, G, Barbosa, L.R.S, Borgers, J.C.
登録日2012-03-08
公開日2013-03-27
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (1.997 Å)
主引用文献High resolution crystal structure and in solution studies of the Old Yellow Enzyme from Trypanosoma cruzi: Insights into oligomerization, enzyme dynamics and specificity
To be Published
4E2B
DownloadVisualize
BU of 4e2b by Molmil
High resolution crystal structure of the old yellow enzyme from Trypanosoma cruzi
分子名称: DI(HYDROXYETHYL)ETHER, FLAVIN MONONUCLEOTIDE, GLYCEROL, ...
著者Murakami, M.T, Rodrigues, N.C, Gava, L.M, Canduri, F, Oliva, G, Barbosa, L.R.S, Borgers, J.C.
登録日2012-03-08
公開日2013-03-27
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (1.269 Å)
主引用文献High resolution crystal structure and in solution studies of the old yellow enzyme from Trypanosoma cruzi: Insights into oligomerization, enzyme dynamics and specificity
To be Published
1M46
DownloadVisualize
BU of 1m46 by Molmil
CRYSTAL STRUCTURE OF MLC1P BOUND TO IQ4 OF MYO2P, A CLASS V MYOSIN
分子名称: IQ4 Motif from MYO2P, A Class V Myosin, Myosin light chain
著者Terrak, M, Dominguez, R.
登録日2002-07-02
公開日2002-11-27
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (2.103 Å)
主引用文献Two distinct myosin light chain structures are induced by specific variations within the bound IQ motifs-functional implications
Embo J., 22, 2003
1M45
DownloadVisualize
BU of 1m45 by Molmil
CRYSTAL STRUCTURE OF MLC1P BOUND TO IQ2 OF MYO2P, A CLASS V MYOSIN
分子名称: IQ2 Motif from MYO2P, A Class V Myosin, Myosin light chain
著者Terrak, M, Dominguez, R.
登録日2002-07-02
公開日2003-02-11
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (1.65 Å)
主引用文献Two distinct myosin light chain structures are induced by specific variations within the bound IQ motifs-functional implications
Embo J., 22, 2003
1VGP
DownloadVisualize
BU of 1vgp by Molmil
Crystal Structure of an Isozyme of Citrate Synthase from Sulfolbus tokodaii strain7
分子名称: 373aa long hypothetical citrate synthase
著者Murakami, M, Ihara, K, Kouyama, T.
登録日2004-04-28
公開日2005-06-28
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Crystal Structures of Two Isozymes of Citrate Synthase from Sulfolobus tokodaii Strain 7.
Biochem Res Int, 2016, 2016
1VGM
DownloadVisualize
BU of 1vgm by Molmil
Crystal Structure of an Isozyme of Citrate Synthase from Sulfolbus tokodaii strain7
分子名称: 378aa long hypothetical citrate synthase, GLYCEROL, SULFATE ION
著者Murakami, M, Ihara, K, Kouyama, T.
登録日2004-04-27
公開日2005-06-28
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Crystal Structures of Two Isozymes of Citrate Synthase from Sulfolobus tokodaii Strain 7.
Biochem Res Int, 2016, 2016
1VYI
DownloadVisualize
BU of 1vyi by Molmil
Structure of the c-terminal domain of the polymerase cofactor of rabies virus: insights in function and evolution.
分子名称: GLYCEROL, RNA POLYMERASE ALPHA SUBUNIT
著者Mavrakis, M, McCarthy, A.A, Roche, S, Blondel, D, Ruigrok, R.W.H.
登録日2004-04-30
公開日2004-10-15
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Structure and Function of the C-Terminal Domain of the Polymerase Cofactor of Rabies Virus
J.Mol.Biol., 343, 2004
4WW3
DownloadVisualize
BU of 4ww3 by Molmil
Crystal structure of the lumi intermediate of squid rhodopsin
分子名称: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE, DOCOSANE, PALMITIC ACID, ...
著者Murakami, M, Kouyama, T.
登録日2014-11-10
公開日2015-06-17
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Crystallographic Study of the LUMI Intermediate of Squid Rhodopsin
Plos One, 10, 2015
4XA5
DownloadVisualize
BU of 4xa5 by Molmil
Crystal structure of the pre-catalytic ternary complex of DNA polymerase lambda with a templating A and an incoming 8-oxo-dGTP
分子名称: 8-OXO-2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, ACETATE ION, DNA polymerase lambda, ...
著者Burak, M.J, Guja, K.E, Garcia-Diaz, M.
登録日2014-12-12
公開日2016-02-10
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Nucleotide binding interactions modulate dNTP selectivity and facilitate 8-oxo-dGTP incorporation by DNA polymerase lambda.
Nucleic Acids Res., 43, 2015
4XUS
DownloadVisualize
BU of 4xus by Molmil
Crystal structure of the pre-catalytic ternary complex of DNA polymerase lambda with a templating A and an incoming dTTP
分子名称: 2',3'-DIDEOXYCYTIDINE-5'-MONOPHOSPHATE, DNA (5'-D(*CP*AP*GP*TP*A)-3'), DNA (5'-D(*CP*GP*GP*CP*AP*GP*TP*AP*CP*TP*G)-3'), ...
著者Burak, M.J, Guja, K.E, Garcia-Diaz, M.
登録日2015-01-26
公開日2016-02-03
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Nucleotide binding interactions modulate dNTP selectivity and facilitate 8-oxo-dGTP incorporation by DNA polymerase lambda.
Nucleic Acids Res., 43, 2015
5IIO
DownloadVisualize
BU of 5iio by Molmil
Crystal structure of the DNA polymerase lambda binary complex
分子名称: DNA (5'-D(*CP*AP*GP*TP*AP*C)-3'), DNA (5'-D(*CP*GP*GP*CP*(8OG)P*GP*TP*AP*CP*TP*G)-3'), DNA (5'-D(P*GP*CP*CP*G)-3'), ...
著者Burak, M.J, Guja, K.E, Garcia-Diaz, M.
登録日2016-03-01
公開日2016-08-17
最終更新日2016-09-28
実験手法X-RAY DIFFRACTION (2.08 Å)
主引用文献A fidelity mechanism in DNA polymerase lambda promotes error-free bypass of 8-oxo-dG.
Embo J., 35, 2016
2H8I
DownloadVisualize
BU of 2h8i by Molmil
Crystal Structure of the Bothropstoxin-I complexed with polyethylene glycol
分子名称: DI(HYDROXYETHYL)ETHER, Phospholipase A2 homolog 1
著者Murakami, M.T, Arni, R.K.
登録日2006-06-07
公開日2007-06-19
最終更新日2022-12-21
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Interfacial surface charge and free accessibility to the PLA2-active site-like region are essential requirements for the activity of Lys49 PLA2 homologues
Toxicon, 49, 2007
5IIM
DownloadVisualize
BU of 5iim by Molmil
Crystal structure of the pre-catalytic ternary extension complex of DNA polymerase lambda with an 8-oxo-dG:dA base-pair
分子名称: 2'-DEOXYURIDINE 5'-ALPHA,BETA-IMIDO-TRIPHOSPHATE, DNA (5'-D(*CP*AP*GP*TP*AP*A)-3'), DNA (5'-D(*CP*GP*GP*CP*AP*(8OG)P*TP*AP*CP*TP*G)-3'), ...
著者Burak, M.J, Guja, K.E, Garcia-Diaz, M.
登録日2016-03-01
公開日2016-09-07
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (1.941 Å)
主引用文献A fidelity mechanism in DNA polymerase lambda promotes error-free bypass of 8-oxo-dG.
Embo J., 35, 2016
5IIJ
DownloadVisualize
BU of 5iij by Molmil
Crystal structure of the pre-catalytic ternary complex of DNA polymerase lambda with a templating 8-oxo-dG and an incoming dCTP
分子名称: 2',3'-DIDEOXYCYTIDINE 5'-TRIPHOSPHATE, DNA (5'-D(*CP*AP*GP*TP*AP*(DOC))-3'), DNA (5'-D(*CP*GP*GP*CP*(8OG)P*GP*TP*AP*CP*TP*G)-3'), ...
著者Burak, M.J, Guja, K.E, Garcia-Diaz, M.
登録日2016-03-01
公開日2016-08-17
最終更新日2024-03-06
実験手法X-RAY DIFFRACTION (1.724 Å)
主引用文献A fidelity mechanism in DNA polymerase lambda promotes error-free bypass of 8-oxo-dG.
Embo J., 35, 2016
5IIL
DownloadVisualize
BU of 5iil by Molmil
Crystal structure of the post-catalytic nick complex of DNA polymerase lambda with a templating 8-oxo-dG and incorporated dA
分子名称: CITRIC ACID, DNA (5'-D(*CP*AP*GP*TP*AP*AP*T)-3'), DNA (5'-D(*CP*GP*GP*CP*AP*(8OG)P*TP*AP*CP*TP*G)-3'), ...
著者Burak, M.J, Guja, K.E, Garcia-Diaz, M.
登録日2016-03-01
公開日2016-08-17
最終更新日2024-03-06
実験手法X-RAY DIFFRACTION (1.96 Å)
主引用文献A fidelity mechanism in DNA polymerase lambda promotes error-free bypass of 8-oxo-dG.
Embo J., 35, 2016
5IIN
DownloadVisualize
BU of 5iin by Molmil
Crystal structure of the pre-catalytic ternary extension complex of DNA polymerase lambda with an 8-oxo-dG:dC base-pair
分子名称: 2'-DEOXYURIDINE 5'-ALPHA,BETA-IMIDO-TRIPHOSPHATE, DNA (5'-D(*CP*AP*GP*TP*AP*C)-3'), DNA (5'-D(*CP*GP*GP*CP*AP*(8OG)P*TP*AP*CP*TP*G)-3'), ...
著者Burak, M.J, Guja, K.E, Garcia-Diaz, M.
登録日2016-03-01
公開日2016-08-17
最終更新日2024-03-06
実験手法X-RAY DIFFRACTION (2.15 Å)
主引用文献A fidelity mechanism in DNA polymerase lambda promotes error-free bypass of 8-oxo-dG.
Embo J., 35, 2016
5IIK
DownloadVisualize
BU of 5iik by Molmil
Crystal structure of the post-catalytic nick complex of DNA polymerase lambda with a templating 8-oxo-dG and incorporated dC
分子名称: CITRIC ACID, DNA (5'-D(*CP*AP*GP*TP*AP*CP*T)-3'), DNA (5'-D(*CP*GP*GP*CP*AP*(8OG)P*TP*AP*CP*TP*G)-3'), ...
著者Burak, M.J, Guja, K.E, Garcia-Diaz, M.
登録日2016-03-01
公開日2016-08-17
最終更新日2024-03-06
実験手法X-RAY DIFFRACTION (1.982 Å)
主引用文献A fidelity mechanism in DNA polymerase lambda promotes error-free bypass of 8-oxo-dG.
Embo J., 35, 2016
1D6Q
DownloadVisualize
BU of 1d6q by Molmil
HUMAN LYSOZYME E102 MUTANT LABELLED WITH 2',3'-EPOXYPROPYL GLYCOSIDE OF N-ACETYLLACTOSAMINE
分子名称: GLYCEROL, LYSOZYME, beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
著者Muraki, M, Harata, K, Sugita, N, Sato, K.
登録日1999-10-15
公開日2000-01-21
最終更新日2021-11-03
実験手法X-RAY DIFFRACTION (1.96 Å)
主引用文献Protein-carbohydrate interactions in human lysozyme probed by combining site-directed mutagenesis and affinity labeling.
Biochemistry, 39, 2000
1D6P
DownloadVisualize
BU of 1d6p by Molmil
HUMAN LYSOZYME L63 MUTANT LABELLED WITH 2',3'-EPOXYPROPYL N,N'-DIACETYLCHITOBIOSE
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, GLYCEROL, LYSOZYME
著者Muraki, M, Harata, K, Sugita, N, Sato, K.
登録日1999-10-15
公開日2000-01-21
最終更新日2021-11-03
実験手法X-RAY DIFFRACTION (2.23 Å)
主引用文献Protein-carbohydrate interactions in human lysozyme probed by combining site-directed mutagenesis and affinity labeling.
Biochemistry, 39, 2000
5III
DownloadVisualize
BU of 5iii by Molmil
Crystal structure of the pre-catalytic ternary complex of DNA polymerase lambda with a templating 8-oxo-dG and an incoming dATP
分子名称: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, DNA (5'-D(*CP*AP*GP*TP*AP*(DOC))-3'), DNA (5'-D(*CP*GP*GP*CP*(8OG)P*GP*TP*AP*CP*TP*G)-3'), ...
著者Burak, M.J, Guja, K.E, Garcia-Diaz, M.
登録日2016-03-01
公開日2016-08-17
最終更新日2024-03-06
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献A fidelity mechanism in DNA polymerase lambda promotes error-free bypass of 8-oxo-dG.
Embo J., 35, 2016
1XX1
DownloadVisualize
BU of 1xx1 by Molmil
Structural basis for ion-coordination and the catalytic mechanism of sphingomyelinases D
分子名称: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, MAGNESIUM ION, SULFATE ION, ...
著者Murakami, M.T, Tambourgi, D.V, Arni, R.K.
登録日2004-11-03
公開日2005-01-18
最終更新日2017-10-11
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献Structural basis for metal ion coordination and the catalytic mechanism of sphingomyelinases d
J.Biol.Chem., 280, 2005
2H8U
DownloadVisualize
BU of 2h8u by Molmil
Bucain, a cardiotoxin from the Malayan Krait Bungarus candidus
分子名称: Bucain
著者Murakami, M.T, Kini, R.M, Arni, R.K.
登録日2006-06-08
公開日2007-06-19
最終更新日2017-10-18
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Crystal Structure of Bucain
To be Published
1Y4L
DownloadVisualize
BU of 1y4l by Molmil
Crystal structure of Bothrops asper myotoxin II complexed with the anti-trypanosomal drug suramin
分子名称: 3,6,9,12,15,18-HEXAOXAICOSANE-1,20-DIOL, 8,8'-[CARBONYLBIS[IMINO-3,1-PHENYLENECARBONYLIMINO(4-METHYL-3,1-PHENYLENE)CARBONYLIMINO]]BIS-1,3,5-NAPHTHALENETRISULFONIC ACID, ISOPROPYL ALCOHOL, ...
著者Murakami, M.T, Arruda, E.Z, Melo, P.A, Martinez, A.B, Calil-Elias, S, Tomaz, M.A, Lomonte, B, Gutierrez, J.M, Arni, R.K.
登録日2004-12-01
公開日2005-06-28
最終更新日2017-10-11
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Inhibition of Myotoxic Activity of Bothrops asper Myotoxin II by the Anti-trypanosomal Drug Suramin.
J.Mol.Biol., 350, 2005

225946

件を2024-10-09に公開中

PDB statisticsPDBj update infoContact PDBjnumon