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PDB: 829 results

8F0U
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Structure of a 12mer DegP cage bound to the client protein hTRF1
Descriptor: Periplasmic serine endoprotease DegP, Telomeric repeat-binding factor 1
Authors:Harkness, R.W, Ripstein, Z.A, Di Trani, J.M, Kay, L.E.
Deposit date:2022-11-04
Release date:2022-11-23
Last modified:2024-06-19
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Flexible Client-Dependent Cages in the Assembly Landscape of the Periplasmic Protease-Chaperone DegP.
J.Am.Chem.Soc., 145, 2023
8F26
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Structure of a 60mer DegP cage bound to the client protein hTRF1
Descriptor: Periplasmic serine endoprotease DegP, Telomeric repeat-binding factor 1
Authors:Harkness, R.W, Ripstein, Z.A, Di Trani, J.M, Kay, L.E.
Deposit date:2022-11-07
Release date:2022-11-23
Last modified:2024-06-19
Method:ELECTRON MICROSCOPY (9.7 Å)
Cite:Flexible Client-Dependent Cages in the Assembly Landscape of the Periplasmic Protease-Chaperone DegP.
J.Am.Chem.Soc., 145, 2023
8F21
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Structure of a 30mer DegP cage bound to the client protein hTRF1
Descriptor: Periplasmic serine endoprotease DegP, Telomeric repeat-binding factor 1
Authors:Harkness, R.W, Ripstein, Z.A, Di Trani, J.M, Kay, L.E.
Deposit date:2022-11-06
Release date:2022-11-23
Last modified:2024-06-19
Method:ELECTRON MICROSCOPY (14.1 Å)
Cite:Flexible Client-Dependent Cages in the Assembly Landscape of the Periplasmic Protease-Chaperone DegP.
J.Am.Chem.Soc., 145, 2023
8F0A
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BU of 8f0a by Molmil
Client-bound structure of a DegP trimer within a 12mer cage
Descriptor: Periplasmic serine endoprotease DegP, Telomeric repeat-binding factor 1
Authors:Harkness, R.W, Ripstein, Z.A, Di Trani, J.M, Kay, L.E.
Deposit date:2022-11-02
Release date:2022-11-23
Last modified:2024-06-19
Method:ELECTRON MICROSCOPY (2.6 Å)
Cite:Flexible Client-Dependent Cages in the Assembly Landscape of the Periplasmic Protease-Chaperone DegP.
J.Am.Chem.Soc., 145, 2023
8F1T
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BU of 8f1t by Molmil
Structure of an 18mer DegP cage bound to the client protein hTRF1
Descriptor: Periplasmic serine endoprotease DegP, Telomeric repeat-binding factor 1
Authors:Harkness, R.W, Ripstein, Z.A, Di Trani, J.M, Kay, L.E.
Deposit date:2022-11-06
Release date:2022-11-23
Last modified:2024-06-19
Method:ELECTRON MICROSCOPY (12.1 Å)
Cite:Flexible Client-Dependent Cages in the Assembly Landscape of the Periplasmic Protease-Chaperone DegP.
J.Am.Chem.Soc., 145, 2023
8F1U
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Structure of a 24mer DegP cage bound to the client protein hTRF1
Descriptor: Periplasmic serine endoprotease DegP, Telomeric repeat-binding factor 1
Authors:Harkness, R.W, Ripstein, Z.A, Di Trani, J.M, Kay, L.E.
Deposit date:2022-11-06
Release date:2022-11-23
Last modified:2024-06-19
Method:ELECTRON MICROSCOPY (13.8 Å)
Cite:Flexible Client-Dependent Cages in the Assembly Landscape of the Periplasmic Protease-Chaperone DegP.
J.Am.Chem.Soc., 145, 2023
6WQV
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BU of 6wqv by Molmil
GH5-4 broad specificity endoglucanase from Ruminococcus champanellensis with bound cellotriose
Descriptor: 1,2-ETHANEDIOL, Endoglucanase, NITRATE ION, ...
Authors:Bianchetti, C.M, Bingman, C.A, Smith, R.W, Glasgow, E.M, Fox, B.G.
Deposit date:2020-04-29
Release date:2020-11-18
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:A structural and kinetic survey of GH5_4 endoglucanases reveals determinants of broad substrate specificity and opportunities for biomass hydrolysis.
J.Biol.Chem., 295, 2020
4DUW
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BU of 4duw by Molmil
E. coli (lacZ) beta-galactosidase (G974A) in complex with allolactose
Descriptor: Beta-galactosidase, DIMETHYL SULFOXIDE, MAGNESIUM ION, ...
Authors:Wheatley, R.W, Lo, S, Janzcewicz, L.J, Dugdale, M.L, Huber, R.E.
Deposit date:2012-02-22
Release date:2013-03-20
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural Explanation for Allolactose (lac operon inducer) Synthesis by lacZ beta-Galactosidase and the Evolutionary Relationship between Allolactose synthesis and the lac Repressor
J.Biol.Chem., 288, 2013
3JBB
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BU of 3jbb by Molmil
Characterization of red-shifted phycobiliprotein complexes isolated from the chlorophyll f-containing cyanobacterium Halomicronema hongdechloris
Descriptor: PHYCOCYANOBILIN, SULFATE ION, allophycocyanin beta chain, ...
Authors:Li, Y, Lin, Y, Garvey, C, Birch, D, Corkery, R.W, Loughlin, P.C, Scheer, H, Willows, R.D, Chen, M.
Deposit date:2015-08-26
Release date:2015-11-11
Last modified:2018-07-18
Method:ELECTRON MICROSCOPY (26 Å)
Cite:Characterization of red-shifted phycobilisomes isolated from the chlorophyll f-containing cyanobacterium Halomicronema hongdechloris.
Biochim.Biophys.Acta, 1857, 2015
3JXR
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BU of 3jxr by Molmil
X-Ray structure of r[CGCG(5-fluoro)CG]2
Descriptor: r[CGCG(5-fluoro)CG]2
Authors:Adamiak, D.A, Milecki, J, Adamiak, R.W, Rypniewski, W.
Deposit date:2009-09-21
Release date:2010-02-09
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.25 Å)
Cite:The hydration and unusual hydrogen bonding in the crystal structure of an RNA duplex containing alternating CG base pairs
New J.Chem., 34, 2010
3KB6
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BU of 3kb6 by Molmil
Crystal structure of D-Lactate dehydrogenase from aquifex aeolicus complexed with NAD and Lactic acid
Descriptor: D-lactate dehydrogenase, DI(HYDROXYETHYL)ETHER, GLYCEROL, ...
Authors:Antonyuk, S.V, Strange, R.W, Ellis, M.J, Bessho, Y, Kuramitsu, S, Yokoyama, S, Hasnain, S.S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2009-10-20
Release date:2009-11-10
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.12 Å)
Cite:Structure of D-lactate dehydrogenase from Aquifex aeolicus complexed with NAD(+) and lactic acid (or pyruvate).
Acta Crystallogr.,Sect.F, 65, 2009
3KBB
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Crystal structure of putative beta-phosphoglucomutase from Thermotoga maritima
Descriptor: GLYCEROL, Phosphorylated carbohydrates phosphatase TM_1254, SULFATE ION
Authors:Strange, R.W, Antonyuk, S.V, Ellis, M.J, Bessho, Y, Kuramitsu, S, Yokoyama, S, Hasnain, S.S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2009-10-20
Release date:2009-11-17
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (1.74 Å)
Cite:Structure of a putative beta-phosphoglucomutase (TM1254) from Thermotoga maritima.
Acta Crystallogr.,Sect.F, 65, 2009
4GV1
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BU of 4gv1 by Molmil
PKB alpha in complex with AZD5363
Descriptor: 4-amino-N-[(1S)-1-(4-chlorophenyl)-3-hydroxypropyl]-1-(7H-pyrrolo[2,3-d]pyrimidin-4-yl)piperidine-4-carboxamide, GLYCEROL, RAC-alpha serine/threonine-protein kinase
Authors:Addie, M, Ballard, P, Bird, G, Buttar, D, Currie, G, Davies, B, Debreczeni, J, Dry, H, Dudley, P, Greenwood, R, Hatter, G, Jestel, A, Johnson, P.D, Kettle, J.G, Lane, C, Lamont, G, Leach, A, Luke, R.W.A, Ogilvie, D, Page, K, Pass, M, Steinbacher, S, Steuber, H, Pearson, S, Ruston, L.
Deposit date:2012-08-30
Release date:2013-02-27
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.49 Å)
Cite:Discovery of 4-Amino-N-[(1S)-1-(4-chlorophenyl)-3-hydroxypropyl]-1-(7H-pyrrolo[2,3-d]pyrimidin-4-yl)piperidine-4-carboxamide (AZD5363), an Orally Bioavailable, Potent Inhibitor of Akt Kinases.
J.Med.Chem., 56, 2013
3L32
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BU of 3l32 by Molmil
Structure of the dimerisation domain of the rabies virus phosphoprotein
Descriptor: Phosphoprotein
Authors:Ivanov, I, Crepin, T, Jamin, M, Ruigrok, R.W.H.
Deposit date:2009-12-16
Release date:2010-02-16
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Structure of the dimerisation domain of the rabies virus phosphoprotein
J.Virol., 2010
3KRG
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BU of 3krg by Molmil
Structural insights into substrate specificity and the anti beta-elimination mechanism of pectate lyase
Descriptor: COBALT (II) ION, GLYCEROL, Pectate lyase, ...
Authors:Pickersgill, R.W, To, T.T.
Deposit date:2009-11-18
Release date:2010-02-09
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural insights into substrate specificity and the anti beta-elimination mechanism of pectate lyase
Biochemistry, 49, 2010
3NDZ
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BU of 3ndz by Molmil
The structure of the catalytic and carbohydrate binding domain of endoglucanase D from Clostridium cellulovorans bound to cellotriose
Descriptor: Endoglucanase D, beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-4)-beta-D-glucopyranose
Authors:Bianchetti, C.M, Smith, R.W, Bingman, C.A, Phillips Jr, G.N.
Deposit date:2010-06-08
Release date:2011-06-29
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.08 Å)
Cite:The structure of the catalytic and carbohydrate binding domain of endoglucanase D bound to cellotriose
To be Published
3NJR
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BU of 3njr by Molmil
Crystal structure of C-terminal domain of precorrin-6Y C5,15-methyltransferase from Rhodobacter capsulatus
Descriptor: GLYCEROL, Precorrin-6y methylase, S-ADENOSYL-L-HOMOCYSTEINE, ...
Authors:Seyedarabi, A, Pickersgill, R.W.
Deposit date:2010-06-17
Release date:2011-06-08
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:An enzyme-trap approach allows isolation of intermediates in cobalamin biosynthesis.
Nat.Chem.Biol., 8, 2012
4H56
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BU of 4h56 by Molmil
Crystal structure of the Clostridium perfringens NetB toxin in the membrane inserted form
Descriptor: Necrotic enteritis toxin B
Authors:Savva, C.G, Fernandes da Costa, S.P, Bokori-Brown, M, Naylor, C, Cole, A.R, Moss, D.S, Titball, R.W, Basak, A.K.
Deposit date:2012-09-18
Release date:2012-12-26
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (3.9 Å)
Cite:Molecular Architecture and Functional Analysis of NetB, a Pore-forming Toxin from Clostridium perfringens.
J.Biol.Chem., 288, 2013
4HTQ
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BU of 4htq by Molmil
Mitigation of X-ray damage in macromolecular crystallography by submicrometer line focusing; total dose 6.70 x 10e+11 X-ray photons
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, Lysozyme C, ...
Authors:Duke, N.E.C, Finfrock, Y.Z, Stern, E.Z, Alkire, R.W, Lazarski, K, Joachimiak, A.
Deposit date:2012-11-01
Release date:2013-05-15
Last modified:2017-11-15
Method:X-RAY DIFFRACTION (1.399 Å)
Cite:Mitigation of X-ray damage in macromolecular crystallography by submicrometre line focusing.
Acta Crystallogr.,Sect.D, 69, 2013
1A1X
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BU of 1a1x by Molmil
CRYSTAL STRUCTURE OF MTCP-1 INVOLVED IN T CELL MALIGNANCIES
Descriptor: HMTCP-1
Authors:Fu, Z.Q, Dubois, G.C, Song, S.P, Kulikovskaya, I, Virgilio, L, Rothstein, J, Croce, C.M, Weber, I.T, Harrison, R.W.
Deposit date:1997-12-18
Release date:1998-05-27
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of MTCP-1: implications for role of TCL-1 and MTCP-1 in T cell malignancies.
Proc.Natl.Acad.Sci.USA, 95, 1998
1A8K
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BU of 1a8k by Molmil
CRYSTALLOGRAPHIC ANALYSIS OF HUMAN IMMUNODEFICIENCY VIRUS 1 PROTEASE WITH AN ANALOG OF THE CONSERVED CA-P2 SUBSTRATE: INTERACTIONS WITH FREQUENTLY OCCURRING GLUTAMIC ACID RESIDUE AT P2' POSITION OF SUBSTRATES
Descriptor: HIV PROTEASE, N-[(2R)-2-({N~5~-[amino(iminio)methyl]-L-ornithyl-L-valyl}amino)-4-methylpentyl]-L-phenylalanyl-L-alpha-glutamyl-L-alanyl-L-norleucinamide
Authors:Weber, I.T, Wu, J, Adomat, J, Harrison, R.W, Kimmel, A.R, Wondrak, E.M, Louis, J.M.
Deposit date:1998-03-27
Release date:1999-01-13
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystallographic analysis of human immunodeficiency virus 1 protease with an analog of the conserved CA-p2 substrate -- interactions with frequently occurring glutamic acid residue at P2' position of substrates.
Eur.J.Biochem., 249, 1997
4YIL
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BU of 4yil by Molmil
OYE1 W116A COMPLEXED WITH (Z)-METHYL 3-CYANO-3-(4-FLUOROPHENYL)ACRYLATE IN A NON PRODUCTIVE BINDING MODE
Descriptor: FLAVIN MONONUCLEOTIDE, MAGNESIUM ION, NADPH dehydrogenase 1, ...
Authors:Santangelo, S, Brenna, E, Stewart, J.D, Powell III, R.W.
Deposit date:2015-03-02
Release date:2016-01-20
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.461 Å)
Cite:Opposite Enantioselectivity in the Bioreduction of (Z)-beta-Aryl-beta-cyanoacrylates Mediated by the Tryptophan 116 Mutants of Old Yellow Enzyme 1: Synthetic Approach to (R)- and (S)-beta-Aryl-gamma-lactams
Adv.Synth.Catal., 357, 2015
4ZQH
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BU of 4zqh by Molmil
Crystal structure of DOX-P Reductoisomerase in complex with NADPH, fosmidomycin and magnesium
Descriptor: 1-deoxy-D-xylulose 5-phosphate reductoisomerase, 2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID, 3-[FORMYL(HYDROXY)AMINO]PROPYLPHOSPHONIC ACID, ...
Authors:Birkinshaw, R.W, Brady, R.L.
Deposit date:2015-05-10
Release date:2016-06-29
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal structures of the Moraxella catarrhalis DOX-P Reductoisomerase
To Be Published
4ZQG
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BU of 4zqg by Molmil
Crystal structure of the Moraxella catarrhalis DOX-P Reductoisomerase in complex with NADH, fosmidomycin and magnesium
Descriptor: 1-deoxy-D-xylulose 5-phosphate reductoisomerase, 2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID, 3-[FORMYL(HYDROXY)AMINO]PROPYLPHOSPHONIC ACID, ...
Authors:Birkinshaw, R.W, Brady, R.L.
Deposit date:2015-05-10
Release date:2016-06-29
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structures of the Moraxella catarrhalis DOX-P Reductoisomerase
To Be Published
4ZQE
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BU of 4zqe by Molmil
Crystal structure of DOX-P Reductoisomerase in complex with magnesium
Descriptor: 1-deoxy-D-xylulose 5-phosphate reductoisomerase, GLYCEROL, SULFATE ION
Authors:Birkinshaw, R.W, Brady, R.L.
Deposit date:2015-05-10
Release date:2016-06-29
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.98 Å)
Cite:Crystal structures of the Moraxella catarrhalis DOX-P Reductoisomerase
To Be Published

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