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PDB: 927 results

1XWE
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NMR Structure of C345C (NTR) domain of C5 of complement
Descriptor: Complement C5
Authors:Bramham, J, Thai, C.-T, Soares, D.C, Uhrin, D, Ogata, R.T, Barlow, P.N.
Deposit date:2004-10-30
Release date:2004-12-21
Last modified:2024-10-16
Method:SOLUTION NMR
Cite:Functional Insights from the Structure of the Multifunctional C345C Domain of C5 of Complement
J.Biol.Chem., 280, 2005
1XQ3
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Crystal structure of the human androgen receptor ligand binding domain bound with R1881
Descriptor: (17BETA)-17-HYDROXY-17-METHYLESTRA-4,9,11-TRIEN-3-ONE, androgen receptor
Authors:He, B, Gampe Jr, R.T, Kole, A.J, Hnat, A.T, Stanley, T.B, An, G, Stewart, E.L, Kalman, R.I, Minges, J.T, Wilson, E.M.
Deposit date:2004-10-11
Release date:2004-11-16
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Structural basis for androgen receptor interdomain and coactivator interactions suggests a transition in nuclear receptor activation function dominance
Mol.Cell, 16, 2004
1XOW
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Crystal structure of the human androgen receptor ligand binding domain bound with an androgen receptor NH2-terminal peptide, AR20-30, and R1881
Descriptor: (17BETA)-17-HYDROXY-17-METHYLESTRA-4,9,11-TRIEN-3-ONE, androgen receptor, decamer fragment of androgen receptor
Authors:He, B, Gampe Jr, R.T, Kole, A.J, Hnat, A.T, Stanley, T.B, An, G, Stewart, E.L, Kalman, R.I, Minges, J.T, Wilson, E.M.
Deposit date:2004-10-07
Release date:2004-11-16
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural basis for androgen receptor interdomain and coactivator interactions suggests a transition in nuclear receptor activation function dominance
Mol.Cell, 16, 2004
1X6Q
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Structure 3: cryocooled crystal structure of the truncated pak pilin from Pseudomonas aeruginosa at 1.51A resolution
Descriptor: Fimbrial protein
Authors:Dunlop, K.V, Irvin, R.T, Hazes, B.
Deposit date:2004-08-11
Release date:2005-04-19
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (1.51 Å)
Cite:Pros and cons of cryocrystallography: should we also collect a room-temperature data set?
Acta Crystallogr.,Sect.D, 61, 2005
1Y6B
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Crystal structure of VEGFR2 in complex with a 2-anilino-5-aryl-oxazole inhibitor
Descriptor: N-(CYCLOPROPYLMETHYL)-4-(METHYLOXY)-3-({5-[3-(3-PYRIDINYL)PHENYL]-1,3-OXAZOL-2-YL}AMINO)BENZENESULFONAMIDE, Vascular endothelial growth factor receptor 2
Authors:Harris, P.A, Cheung, M, Hunter, R.N, Brown, M.L, Veal, J.M, Nolte, R.T, Wang, L, Liu, W, Crosby, R.M, Johnson, J.H, Epperly, A.H, Kumar, R, Luttrell, D.K, Stafford, J.A.
Deposit date:2004-12-05
Release date:2005-06-07
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Discovery and evaluation of 2-anilino-5-aryloxazoles as a novel class of VEGFR2 kinase inhibitors.
J.Med.Chem., 48, 2005
1YBW
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BU of 1ybw by Molmil
Protease domain of HGFA with no inhibitor
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Hepatocyte growth factor activator precursor
Authors:Shia, S, Stamos, J, Kirchhofer, D, Fan, B, Wu, J, Corpuz, R.T, Santell, L, Lazarus, R.A, Eigenbrot, C.
Deposit date:2004-12-21
Release date:2005-02-15
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Conformational lability in serine protease active sites: structures of hepatocyte growth factor activator (HGFA) alone and with the inhibitory domain from HGFA inhibitor-1B.
J.Mol.Biol., 346, 2005
1Y0S
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Crystal structure of PPAR delta complexed with GW2331
Descriptor: (2S)-2-(4-[2-(3-[2,4-DIFLUOROPHENYL]-1-HEPTYLUREIDO)ETHYL]PHENOXY)-2-METHYLBUTYRIC ACID, IODIDE ION, Peroxisome proliferator activated receptor delta, ...
Authors:Takada, I, Yu, R.T, Xu, H.E, Xu, R.X, Lambert, M.H, Montana, V.G, Kliewer, S.A, Evans, R.M, Umesono, K.
Deposit date:2004-11-16
Release date:2005-03-29
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:Alteration of a Single Amino Acid in Peroxisome Proliferator-Activated Receptor-alpha (PPARalpha) Generates a PPAR delta Phenotype
MOL.ENDOCRINOL., 14, 2000
1YH5
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BU of 1yh5 by Molmil
Solution NMR Structure of Protein yggU from Escherichia coli. Northeast Structural Genomics Consortium Target ER14.
Descriptor: ORF, HYPOTHETICAL PROTEIN
Authors:Aramini, J.M, Xiao, R, Huang, Y.J, Acton, T.B, Wu, M.J, Mills, J.L, Tejero, R.T, Szyperski, T, Montelione, G.T, Northeast Structural Genomics Consortium (NESG)
Deposit date:2005-01-06
Release date:2005-02-01
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Solution Structure of the Hypothetical Protein Yggu from E. Coli. Northeast Structural Genomics Consortium Target Er14.
To be Published
1Y6U
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The Structure of the Excisionase (Xis) Protein from Conjugative Transposon Tn916 Provides Insights into the Regulation of Heterobivalent Tyrosine Recombinases
Descriptor: Excisionase from transposon Tn916
Authors:Abbani, M, Iwahara, M, Clubb, R.T.
Deposit date:2004-12-07
Release date:2005-03-15
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:The structure of the excisionase (xis) protein from conjugative transposon tn916 provides insights into the regulation of heterobivalent tyrosine recombinases
J.Mol.Biol., 347, 2005
1YFN
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BU of 1yfn by Molmil
Versatile modes of peptide recognition by the AAA+ adaptor protein SspB- the crystal structure of a SspB-RseA complex
Descriptor: Sigma-E factor negative regulatory protein, Stringent starvation protein B
Authors:Levchenko, I, Grant, R.A, Flynn, J.M, Sauer, R.T, Baker, T.A.
Deposit date:2005-01-03
Release date:2005-05-17
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Versatile modes of peptide recognition by the AAA+ adaptor protein SspB
Nat.Struct.Mol.Biol., 12, 2005
1Y6A
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BU of 1y6a by Molmil
Crystal structure of VEGFR2 in complex with a 2-anilino-5-aryl-oxazole inhibitor
Descriptor: N-[5-(ETHYLSULFONYL)-2-METHOXYPHENYL]-5-[3-(2-PYRIDINYL)PHENYL]-1,3-OXAZOL-2-AMINE, Vascular endothelial growth factor receptor 2
Authors:Harris, P.A, Cheung, M, Hunter, R.N, Brown, M.L, Veal, J.M, Nolte, R.T, Wang, L, Liu, W, Crosby, R.M, Johnson, J.H, Epperly, A.H, Kumar, R, Luttrell, D.K, Stafford, J.A.
Deposit date:2004-12-05
Release date:2005-06-07
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Discovery and evaluation of 2-anilino-5-aryloxazoles as a novel class of VEGFR2 kinase inhibitors.
J.Med.Chem., 48, 2005
1YC0
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short form HGFA with first Kunitz domain from HAI-1
Descriptor: Hepatocyte growth factor activator, Kunitz-type protease inhibitor 1, PHOSPHATE ION
Authors:Shia, S, Stamos, J, Kirchhofer, D, Fan, B, Wu, J, Corpuz, R.T, Santell, L, Lazarus, R.A, Eigenbrot, C.
Deposit date:2004-12-21
Release date:2005-02-15
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Conformational lability in serine protease active sites: structures of hepatocyte growth factor activator (HGFA) alone and with the inhibitory domain from HGFA inhibitor-1B.
J.Mol.Biol., 346, 2005
9C87
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Cryo-EM Structure of a Proteolytic ClpXP AAA+ Machine Poised to Unfold a Linear-Degron DHFR-ssrA Substrate Bound with MTX
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, ATP-dependent Clp protease ATP-binding subunit ClpX, ...
Authors:Ghanbarpour, A, Sauer, R.T, Davis, J.H.
Deposit date:2024-06-12
Release date:2024-10-16
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:Cryo-EM Structure of a Proteolytic ClpXP AAA+ Machine Poised to Unfold a Linear-Degron DHFR-ssrA Substrate Bound with MTX
To Be Published
9DXL
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BU of 9dxl by Molmil
RhoBAST RNA aptamer in complex with the SpyRho555 analogue, MaP555
Descriptor: 3-[3-(dimethylamino)-6-(dimethyl-$l^{4}-azanylidene)xanthen-9-yl]-4-(dimethylsulfamoylcarbamoyl)benzoic acid, BARIUM ION, RhoBAST aptamer
Authors:Siwik, S.H, Batey, R.T.
Deposit date:2024-10-11
Release date:2024-10-23
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structure of RhoBAST aptamer in complex with the SpyRho5555 analogue, MaP555
To Be Published
9C88
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Cryo-EM Structure of a Proteolytic ClpXP AAA+ Machine Translocating a Portion of a Branched-Degron DHFR Substrate
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, ATP-dependent Clp protease ATP-binding subunit ClpX, ...
Authors:Ghanbarpour, A, Sauer, R.T, Davis, J.H.
Deposit date:2024-06-12
Release date:2024-10-16
Method:ELECTRON MICROSCOPY (2.6 Å)
Cite:Cryo-EM structure of a fully-engaged DHFR-ssrA substrate and the AAA+ ClpXP protease
To Be Published
9BUN
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RhoBAST aptamer RNA in complex with 5(6)-carboxytetramethylrhodamine
Descriptor: 5-carboxy methylrhodamine, IRIDIUM HEXAMMINE ION, RNA (48-MER)
Authors:Batey, R.T, Siwik, S.H.
Deposit date:2024-05-17
Release date:2024-06-05
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structure of RhoBAST RNA aptamer in complex with 5(6)-carboxytetramethylrhodamine (TAMRA)
To Be Published
3NPQ
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BU of 3npq by Molmil
Structure of the S-adenosylhomocysteine riboswitch at 2.18 A
Descriptor: COBALT HEXAMMINE(III), S-ADENOSYL-L-HOMOCYSTEINE, S-ADENOSYLHOMOCYSTEINE RIBOSWITCH
Authors:Reyes, F.E, Edwards, A.E, Batey, R.T.
Deposit date:2010-06-28
Release date:2010-10-06
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.1814 Å)
Cite:Structural basis for recognition of S-adenosylhomocysteine by riboswitches.
Rna, 16, 2010
4E7A
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BU of 4e7a by Molmil
Crystal structure of a product state assembly of HCV NS5B genotype 2a JFH-1 isolate with beta hairpin deletion bound to primer-template RNA with a 2',3'-ddC
Descriptor: 5'-R(*CP*AP*UP*GP*GP*C)-D(P*(DOC))-3', RNA-directed RNA polymerase
Authors:Edwards, T.E, Mosley, R.T.
Deposit date:2012-03-16
Release date:2012-04-18
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structure of hepatitis C virus polymerase in complex with primer-template RNA.
J.Virol., 86, 2012
3O2B
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BU of 3o2b by Molmil
E. coli ClpS in complex with a Phe N-end rule peptide
Descriptor: ATP-dependent Clp protease adaptor protein ClpS, CHLORIDE ION, Phe N-end rule peptide, ...
Authors:Roman-Hernandez, G, Grant, R.A, Sauer, R.T, Baker, T.A, de Regt, A.
Deposit date:2010-07-22
Release date:2011-12-14
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:The ClpS adaptor mediates staged delivery of N-end rule substrates to the AAA+ ClpAP protease.
Mol.Cell, 43, 2011
4ERL
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BU of 4erl by Molmil
Crystal structure of the lysine riboswitch bound to a lysine-glycine dipeptide
Descriptor: GLYCINE, LYSINE, Lysine riboswitch RNA
Authors:Garst, A.D, Porter, E, Batey, R.T.
Deposit date:2012-04-20
Release date:2012-07-18
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (3 Å)
Cite:Insights into the regulatory landscape of the lysine riboswitch.
J.Mol.Biol., 423, 2012
4E76
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Apo crystal structure of HCV NS5B genotype 2A JFH-1 isolate with beta hairpin loop deletion
Descriptor: 1,2-ETHANEDIOL, RNA-directed RNA polymerase, SULFATE ION
Authors:Edwards, T.E, Mosley, R.T.
Deposit date:2012-03-16
Release date:2012-04-18
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structure of hepatitis C virus polymerase in complex with primer-template RNA.
J.Virol., 86, 2012
4I5O
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BU of 4i5o by Molmil
Crystal Structure of W-W-R ClpX Hexamer
Descriptor: ATP-dependent Clp protease ATP-binding subunit ClpX, SULFATE ION
Authors:Glynn, S.E, Nager, A.R, Stinson, B.S, Schmitz, K.R, Baker, T.A, Sauer, R.T.
Deposit date:2012-11-28
Release date:2013-05-15
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (4.4787 Å)
Cite:Nucleotide Binding and Conformational Switching in the Hexameric Ring of a AAA+ Machine.
Cell(Cambridge,Mass.), 153, 2013
3OF8
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BU of 3of8 by Molmil
Structural Basis for Reversible and Irreversible Inhibition of Human Cathepsin L by their Respective Dipeptidyl Glyoxal and Diazomethylketone Inhibitors
Descriptor: Cathepsin L1, Nalpha-[(benzyloxy)carbonyl]-N-[(2S)-1-(4-tert-butoxyphenyl)-4-hydroxy-3-oxobutan-2-yl]-L-phenylalaninamide
Authors:Shenoy, R.T, Sivaraman, J.
Deposit date:2010-08-14
Release date:2010-12-08
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural basis for reversible and irreversible inhibition of human cathepsin L by their respective dipeptidyl glyoxal and diazomethylketone inhibitors.
J.Struct.Biol., 173, 2011
4I9K
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Crystal structure of symmetric W-W-W ClpX Hexamer
Descriptor: ATP-dependent Clp protease ATP-binding subunit ClpX, SULFATE ION
Authors:Glynn, S.E, Nager, A.R, Stinson, B.S, Schmitz, K.R, Baker, T.A, Sauer, R.T.
Deposit date:2012-12-05
Release date:2013-05-15
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (5.0003 Å)
Cite:Nucleotide Binding and Conformational Switching in the Hexameric Ring of a AAA+ Machine.
Cell(Cambridge,Mass.), 153, 2013
4E78
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Crystal structure of a product state assembly of HCV NS5B genotype 2a JFH-1 isolate with beta hairpin loop deletion bound to primer-template RNA with 3'-dG
Descriptor: 5'-R(*U*AP*CP*CP*GP*(GDO))-3', PROTEIN (RNA-directed RNA polymerase)
Authors:Edwards, T.E, Mosley, R.T.
Deposit date:2012-03-16
Release date:2012-04-18
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Structure of hepatitis C virus polymerase in complex with primer-template RNA.
J.Virol., 86, 2012

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