Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 27201 件

4TMZ
DownloadVisualize
BU of 4tmz by Molmil
Translation initiation factor eIF5B (517-858) from C. thermophilum, bound to GTPgammaS and potassium
分子名称: 5'-GUANOSINE-DIPHOSPHATE-MONOTHIOPHOSPHATE, CHLORIDE ION, GLYCEROL, ...
著者Kuhle, B, Ficner, R.
登録日2014-06-02
公開日2014-09-24
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (2.28 Å)
主引用文献A monovalent cation acts as structural and catalytic cofactor in translational GTPases.
Embo J., 33, 2014
5LLM
DownloadVisualize
BU of 5llm by Molmil
Structure of the thermostabilized EAAT1 cryst mutant in complex with L-ASP and the allosteric inhibitor UCPH101
分子名称: 2-Amino-5,6,7,8-tetrahydro-4-(4-methoxyphenyl)-7-(naphthalen-1-yl)-5-oxo-4H-chromene-3-carbonitrile, ASPARTIC ACID, Excitatory amino acid transporter 1,Neutral amino acid transporter B(0),Excitatory amino acid transporter 1, ...
著者Canul-Tec, J, Assal, R, Legrand, P, Reyes, N.
登録日2016-07-27
公開日2017-04-19
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (3.25 Å)
主引用文献Structure and allosteric inhibition of excitatory amino acid transporter 1.
Nature, 544, 2017
4TN9
DownloadVisualize
BU of 4tn9 by Molmil
Crystal structure of Clostridium histolyticum ColG collagenase polycystic kidney disease-like domain at 1.4 Angstrom resolution
分子名称: Collagenase
著者Bauer, R, Sakon, J, Philominathan, S.T.L, Matsushita, O, Gann, S.
登録日2014-06-03
公開日2015-03-11
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献Structures of three polycystic kidney disease-like domains from Clostridium histolyticum collagenases ColG and ColH.
Acta Crystallogr.,Sect.D, 71, 2015
5A9A
DownloadVisualize
BU of 5a9a by Molmil
Crystal structure of Simulium ubiquitum CPV20 polyhedra
分子名称: POLYHEDRIN, URIDINE 5'-TRIPHOSPHATE
著者Ji, X, Axford, D, Owen, R, Evans, G, Ginn, H.M, Sutton, G, Stuart, D.I.
登録日2015-07-17
公開日2015-09-02
最終更新日2024-05-01
実験手法X-RAY DIFFRACTION (1.822 Å)
主引用文献Polyhedra Structures and the Evolution of the Insect Viruses.
J.Struct.Biol., 192, 2015
5LMF
DownloadVisualize
BU of 5lmf by Molmil
Structure of C-terminal domain from S. cerevisiae Pat1 decapping activator bound to Dcp2 HLM3 peptide (region 484-500)
分子名称: 1,2-ETHANEDIOL, CHLORIDE ION, DNA topoisomerase 2-associated protein PAT1, ...
著者Charenton, C, Gaudon-Plesse, C, Fourati, Z, Taverniti, V, Back, R, Kolesnikova, O, Seraphin, B, Graille, M.
登録日2016-07-30
公開日2017-08-16
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (2.15 Å)
主引用文献A unique surface on Pat1 C-terminal domain directly interacts with Dcp2 decapping enzyme and Xrn1 5'-3' mRNA exonuclease in yeast.
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
5ABF
DownloadVisualize
BU of 5abf by Molmil
Structure of GH84 with ligand
分子名称: 1,2-ETHANEDIOL, 2-[(2S,3R,4R,5R)-5-(hydroxymethyl)-3,4-bis(oxidanyl)-1-pentyl-pyrrolidin-2-yl]-N-methyl-ethanamide, CALCIUM ION, ...
著者Bergeron-Brlek, M, Goodwin-Tindall, J, Cekic, N, Varghese, V, Zandberg, W.F, Shan, X, Roth, C, Chan, S, Davies, G.J, Vocadlo, D.J, Britton, R.
登録日2015-08-05
公開日2015-11-18
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献A Convenient Approach to Stereoisomeric Iminocyclitols: Generation of Potent Brain-Permeable Oga Inhibitors.
Angew.Chem.Int.Ed.Engl., 54, 2015
5LLQ
DownloadVisualize
BU of 5llq by Molmil
Crystal structure of Sulfolobus solfataricus O6-methylguanine methyltransferase C119F variant
分子名称: GLYCEROL, Methylated-DNA--protein-cysteine methyltransferase
著者Miggiano, R, Rossi, F, Rizzi, M.
登録日2016-07-28
公開日2016-11-09
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Interdomain interactions rearrangements control the reaction steps of a thermostable DNA alkyltransferase.
Biochim.Biophys.Acta, 1861, 2016
5AHZ
DownloadVisualize
BU of 5ahz by Molmil
Bromide-bound form of Halorhodopsin from Halobacterium salinarum in a new rhombohedral crystal form
分子名称: BROMIDE ION, HALORHODOPSIN, RETINAL, ...
著者Schreiner, M, Schlesinger, R, Heberle, J, Niemann, H.H.
登録日2015-02-11
公開日2015-04-22
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (2.45 Å)
主引用文献Structure of Halorhodopsin from Halobacterium Salinarum in a New Crystal Form that Imposes Little Restraint on the E-F Loop.
J.Struct.Biol., 190, 2015
7M5H
DownloadVisualize
BU of 7m5h by Molmil
Crystal structure of conserved protein from Enterococcus faecalis V583
分子名称: 1,2-ETHANEDIOL, GLYCEROL, Nucleoside 2-deoxyribosyltransferase
著者Nocek, B, Wu, R, Moy, S, Joachimiak, A, Midwest Center for Structural Genomics (MCSG)
登録日2021-03-23
公開日2021-04-07
実験手法X-RAY DIFFRACTION (2.15 Å)
主引用文献Crystal structure of conserved protein from Enterococcus faecalis V583
To Be Published
5A9Z
DownloadVisualize
BU of 5a9z by Molmil
Complex of Thermous thermophilus ribosome bound to BipA-GDPCP
分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ...
著者Kumar, V, Chen, Y, Ahmed, T, Tan, J, Ero, R, Bhushan, S, Gao, Y.-G.
登録日2015-07-23
公開日2015-10-14
最終更新日2019-12-18
実験手法ELECTRON MICROSCOPY (4.7 Å)
主引用文献Structure of Bipa in GTP Form Bound to the Ratcheted Ribosome.
Proc.Natl.Acad.Sci.USA, 112, 2015
5AFN
DownloadVisualize
BU of 5afn by Molmil
alpha7-AChBP in complex with lobeline and fragment 5
分子名称: (4R)-4-(2-phenylethyl)pyrrolidin-2-one, 2-acetamido-2-deoxy-beta-D-glucopyranose, ACETYLCHOLINE-BINDING PROTEIN, ...
著者Spurny, R, Debaveye, S, Farinha, A, Veys, K, Gossas, T, Atack, J, Bertrand, D, Kemp, J, Vos, A, Danielson, U.H, Tresadern, G, Ulens, C.
登録日2015-01-22
公開日2015-05-06
最終更新日2020-07-29
実験手法X-RAY DIFFRACTION (2.149 Å)
主引用文献Molecular Blueprint of Allosteric Binding Sites in a Homologue of the Agonist-Binding Domain of the Alpha7 Nicotinic Acetylcholine Receptor.
Proc.Natl.Acad.Sci.USA, 112, 2015
5AJO
DownloadVisualize
BU of 5ajo by Molmil
Crystal structure of the inactive form of GalNAc-T2 in complex with the glycopeptide MUC5AC-3,13
分子名称: 2-acetamido-2-deoxy-alpha-D-galactopyranose, MUCIN, POLYPEPTIDE N-ACETYLGALACTOSAMINYLTRANSFERASE 2, ...
著者Lira-Navarrete, E, delasRivas, M, Companon, I, Pallares, M.C, Kong, Y, Iglesias-Fernandez, J, Bernardes, G.J.L, Peregrina, J.M, Rovira, C, Bernado, P, Bruscolini, P, Clausen, H, Lostao, A, Corzana, F, Hurtado-Guerrero, R.
登録日2015-02-26
公開日2015-03-11
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (1.48 Å)
主引用文献Dynamic Interplay between Catalytic and Lectin Domains of Galnac-Transferases Modulates Protein O-Glycosylation.
Nat.Commun., 6, 2015
4RN7
DownloadVisualize
BU of 4rn7 by Molmil
The crystal structure of N-acetylmuramoyl-L-alanine amidase from Clostridium difficile 630
分子名称: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, FORMIC ACID, GLYCEROL, ...
著者Tan, K, Mulligan, R, Kwon, K, Anderson, W.F, Joachimiak, A, Center for Structural Genomics of Infectious Diseases (CSGID)
登録日2014-10-23
公開日2014-11-05
最終更新日2017-11-22
実験手法X-RAY DIFFRACTION (1.717 Å)
主引用文献The crystal structure of N-acetylmuramoyl-L-alanine amidase from Clostridium difficile 630
To be Published
2BI4
DownloadVisualize
BU of 2bi4 by Molmil
Lactaldehyde:1,2-propanediol oxidoreductase of Escherichia coli
分子名称: CHLORIDE ION, FE (III) ION, LACTALDEHYDE REDUCTASE, ...
著者Montella, C, Bellsolell, L, Badia, J, Baldoma, L, Perez, R, Coll, M, Aguilar, J.
登録日2005-01-20
公開日2005-07-06
最終更新日2023-12-13
実験手法X-RAY DIFFRACTION (2.85 Å)
主引用文献Crystal Structure of an Iron-Dependent Group III Dehydrogenase that Interconverts L-Lactaldehyde and L-1,2-Propanediol in Escherichia Coli
J.Bacteriol., 187, 2005
4RQ6
DownloadVisualize
BU of 4rq6 by Molmil
Human DNA Polymerase Beta With Gapped DNA Containing an 8-oxo-7,8-dihydro-Guanine(8-oxoG) and dATP soaked with MgCl2 for 80 s
分子名称: ACETATE ION, DNA (5'-D(*CP*CP*GP*AP*CP*(8OG)P*GP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3'), DNA (5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*CP*A)-3'), ...
著者Vyas, R, Suo, Z.
登録日2014-10-31
公開日2015-04-15
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (2.25 Å)
主引用文献Viewing Human DNA Polymerase beta Faithfully and Unfaithfully Bypass an Oxidative Lesion by Time-Dependent Crystallography.
J.Am.Chem.Soc., 137, 2015
4ZZO
DownloadVisualize
BU of 4zzo by Molmil
Human ERK2 in complex with an irreversible inhibitor
分子名称: MITOGEN-ACTIVATED PROTEIN KINASE 1, N-[2-[[5-chloranyl-2-(oxan-4-ylamino)pyrimidin-4-yl]amino]phenyl]propanamide, SULFATE ION
著者Ward, R.A, Colclough, N, Challinor, M, Debreczeni, J.E, Eckersley, K, Fairley, G, Feron, L, Flemington, V, Graham, M.A, Greenwood, R, Hopcroft, P, Howard, T.D, James, M, Jones, C.D, Jones, C.R, Renshaw, J, Roberts, K, Snow, L, Tonge, M, Yeung, K.
登録日2015-04-10
公開日2015-05-27
最終更新日2015-08-26
実験手法X-RAY DIFFRACTION (1.63 Å)
主引用文献Structure-Guided Design of Highly Selective and Potent Covalent Inhibitors of Erk1/2.
J.Med.Chem., 58, 2015
4RQP
DownloadVisualize
BU of 4rqp by Molmil
Crystal structure of the natually occurring empty particle of a clinical C4 strain EV71
分子名称: Capsid protein VP0, Capsid protein VP1, Capsid protein VP3
著者Chen, R, Lyu, K.
登録日2014-11-04
公開日2014-12-17
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (3.151 Å)
主引用文献Crystal structures of enterovirus 71 (EV71) recombinant virus particles provide insights into vaccine design.
J.Biol.Chem., 290, 2015
4RS5
DownloadVisualize
BU of 4rs5 by Molmil
Crystal structure of an uncoating intermediate of a EV71 recombinant virus
分子名称: Capsid protein VP0, Capsid protein VP1, Capsid protein VP3
著者Chen, R, Lyu, K.
登録日2014-11-07
公開日2014-12-17
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (3.805 Å)
主引用文献Crystal structures of enterovirus 71 (EV71) recombinant virus particles provide insights into vaccine design.
J.Biol.Chem., 290, 2015
7K4W
DownloadVisualize
BU of 7k4w by Molmil
Crystal structure of Kemp Eliminase HG3.17 in the inactive state
分子名称: CALCIUM ION, Endo-1,4-beta-xylanase
著者Padua, R.A.P, Otten, R, Bunzel, A, Nguyen, V, Pitsawong, W, Patterson, M, Sui, S, Perry, S.L, Cohen, A.E, Hilvert, D, Kern, D.
登録日2020-09-16
公開日2020-12-02
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献How directed evolution reshapes the energy landscape in an enzyme to boost catalysis.
Science, 370, 2020
7K6U
DownloadVisualize
BU of 7k6u by Molmil
Carbonic Anhydrase IX mimic complexed with 4-(2-(3-(4-methylphenyl)ureido)ethylsulfonamido)benzenesulfonamide
分子名称: 4-{[(2-{[(4-methylphenyl)carbamoyl]amino}ethyl)sulfonyl]amino}benzene-1-sulfonamide, Carbonic anhydrase 2, DIMETHYL SULFOXIDE, ...
著者Andring, J.T, Singh, S, McKenna, R.
登録日2020-09-21
公開日2020-12-23
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (1.605 Å)
主引用文献Handling drug-target selectivity: A study on ureido containing Carbonic Anhydrase inhibitors.
Eur.J.Med.Chem., 212, 2021
4RR7
DownloadVisualize
BU of 4rr7 by Molmil
N-terminal editing domain of threonyl-tRNA synthetase from Aeropyrum pernix with L-Ser3AA (snapshot 2)
分子名称: MAGNESIUM ION, Probable threonine--tRNA ligase 2, SERINE-3'-AMINOADENOSINE
著者Ahmad, S, Muthukumar, S, Yerabham, A.S.K, Kamarthapu, V, Sankaranarayanan, R.
登録日2014-11-06
公開日2015-07-15
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (1.86 Å)
主引用文献Specificity and catalysis hardwired at the RNA-protein interface in a translational proofreading enzyme.
Nat Commun, 6, 2015
7JW6
DownloadVisualize
BU of 7jw6 by Molmil
Crystal structure of Drosophila Nibbler EXO domain
分子名称: Exonuclease mut-7 homolog
著者Xie, W, Sowemimo, I, Hayashi, R, Wang, J, Brennecke, J, Ameres, S.L, Patel, D.J.
登録日2020-08-24
公開日2021-01-20
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Structure-function analysis of microRNA 3'-end trimming by Nibbler.
Proc.Natl.Acad.Sci.USA, 117, 2020
4RRG
DownloadVisualize
BU of 4rrg by Molmil
Editing domain of threonyl-tRNA synthetase from Methanococcus jannaschii with L-Thr3AA
分子名称: 3'-deoxy-3'-(L-threonylamino)adenosine, Threonine--tRNA ligase
著者Ahmad, S, Yerabham, A.S.K, Kamarthapu, V, Sankaranarayanan, R.
登録日2014-11-06
公開日2015-07-15
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (1.93 Å)
主引用文献Specificity and catalysis hardwired at the RNA-protein interface in a translational proofreading enzyme.
Nat Commun, 6, 2015
5A6Q
DownloadVisualize
BU of 5a6q by Molmil
Native structure of the LecB lectin from Pseudomonas aeruginosa strain PA14
分子名称: 1,2-ETHANEDIOL, CALCIUM ION, FUCOSE-BINDING LECTIN PA-IIL, ...
著者Sommer, R, Wagner, S, Varrot, A, Khaledi, A, Haussler, S, Imberty, A, Titz, A.
登録日2015-06-30
公開日2016-05-25
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献The virulence factor LecB varies in clinical isolates: consequences for ligand binding and drug discovery.
Chem Sci, 7, 2016
4RSO
DownloadVisualize
BU of 4rso by Molmil
The structure of the neurotropic AAVrh.8 viral vector
分子名称: 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE, CHLORIDE ION, Capsid protein VP1, ...
著者Halder, S, Van Vliet, K, Smith, J.K, McKenna, R, Wilson, J.M, Agbandje-McKenna, M.
登録日2014-11-10
公開日2016-04-13
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (3.5 Å)
主引用文献Structure of neurotropic adeno-associated virus AAVrh.8.
J.Struct.Biol., 192, 2015

222624

件を2024-07-17に公開中

PDB statisticsPDBj update infoContact PDBjnumon