Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 27191 results

3WS4
DownloadVisualize
BU of 3ws4 by Molmil
N288Q-N321Q mutant BETA-LACTAMASE DERIVED FROM CHROMOHALOBACTER SP.560 (Condition-2A)
Descriptor: Beta-lactamase, CHLORIDE ION, STRONTIUM ION
Authors:Arai, S, Yonezawa, Y, Okazaki, N, Matsumoto, F, Shimizu, R, Yamada, M, Adachi, M, Tamada, T, Tokunaga, H, Ishibashi, M, Tokunaga, M, Kuroki, R.
Deposit date:2014-02-28
Release date:2015-03-04
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structure of a highly acidic beta-lactamase from the moderate halophile Chromohalobacter sp. 560 and the discovery of a Cs(+)-selective binding site
Acta Crystallogr.,Sect.D, 71, 2015
4BAR
DownloadVisualize
BU of 4bar by Molmil
Thaumatin from Thaumatococcus daniellii structure in complex with the europium tris-hydroxyethyltriazoledipicolinate complex at 1.20 A resolution.
Descriptor: 4-(4-(2-hydroxyethyl)-1H-1,2,3-triazol-1-yl)pyridine-2,6-dicarboxylic acid, EUROPIUM (III) ION, THAUMATIN-1
Authors:Talon, R, Kahn, R, Gautier, A, Nauton, L, Girard, E.
Deposit date:2012-09-14
Release date:2012-11-14
Last modified:2019-03-06
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:Clicked europium dipicolinate complexes for protein X-ray structure determination.
Chem. Commun. (Camb.), 48, 2012
3WU8
DownloadVisualize
BU of 3wu8 by Molmil
Spatiotemporal development of soaked protein crystal; derivative 1080 sec
Descriptor: Lysozyme C, PLATINUM (IV) ION
Authors:Mizutani, R, Saiga, R.
Deposit date:2014-04-23
Release date:2014-07-30
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2 Å)
Cite:Spatiotemporal development of soaked protein crystal
Sci Rep, 4, 2014
1ZP3
DownloadVisualize
BU of 1zp3 by Molmil
E. coli Methylenetetrahydrofolate Reductase (oxidized)
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 5,10-methylenetetrahydrofolate reductase, FLAVIN-ADENINE DINUCLEOTIDE, ...
Authors:Pejchal, R, Sargeant, R, Ludwig, M.L.
Deposit date:2005-05-16
Release date:2005-08-09
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Structures of NADH and CH(3)-H(4)Folate Complexes of Escherichia coli Methylenetetrahydrofolate Reductase Reveal a Spartan Strategy for a Ping-Pong Reaction
Biochemistry, 44, 2005
3WNC
DownloadVisualize
BU of 3wnc by Molmil
Crystal structure of EF-Pyl in complex with GDP
Descriptor: GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, Protein translation elongation factor 1A
Authors:Yanagisawa, T, Ishii, R, Fukunaga, R, Sengoku, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2013-12-08
Release date:2014-12-10
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:A SelB/EF-Tu/aIF2 gamma-like protein from Methanosarcina mazei in the GTP-bound form binds cysteinyl-tRNA(Cys.).
J. Struct. Funct. Genomics, 16, 2015
6GJ1
DownloadVisualize
BU of 6gj1 by Molmil
The baseplate complex from the type VI secretion system
Descriptor: Putative type VI secretion protein, TssE, TssG
Authors:Rapisarda, C, Fronzes, R.
Deposit date:2018-05-15
Release date:2018-10-17
Last modified:2024-05-15
Method:ELECTRON MICROSCOPY (4.7 Å)
Cite:Biogenesis and structure of a type VI secretion baseplate.
Nat Microbiol, 3, 2018
3WPK
DownloadVisualize
BU of 3wpk by Molmil
SPATIOTEMPORAL DEVELOPMENT of SOAKED PROTEIN CRYSTAL; 750 SEC
Descriptor: Lysozyme C, PLATINUM (IV) ION
Authors:Mizutani, R, Saiga, R.
Deposit date:2014-01-12
Release date:2014-07-30
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2 Å)
Cite:Spatiotemporal development of soaked protein crystal
Sci Rep, 4, 2014
1Z00
DownloadVisualize
BU of 1z00 by Molmil
Solution structure of the C-terminal domain of ERCC1 complexed with the C-terminal domain of XPF
Descriptor: DNA excision repair protein ERCC-1, DNA repair endonuclease XPF
Authors:Tripsianes, K, Folkers, G, Ab, E, Das, D, Odijk, H, Jaspers, N.G.J, Hoeijmakers, J.H.J, Kaptein, R, Boelens, R.
Deposit date:2005-03-01
Release date:2005-12-20
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:The Structure of the Human ERCC1/XPF Interaction Domains Reveals a Complementary Role for the Two Proteins in Nucleotide Excision Repair
Structure, 13, 2005
4LMQ
DownloadVisualize
BU of 4lmq by Molmil
Development and Preclinical Characterization of a Humanized Antibody Targeting CXCL12
Descriptor: Stromal cell-derived factor 1, hu30D8 Fab heavy chain, hu30D8 Fab light chain
Authors:Zhong, Z, Wang, J, Li, B, Xiang, H, Ultsch, M, Coons, M, Wong, T, Chiang, N.Y, Clark, S, Clark, R, Quintana, L, Gribling, P, Suto, E, Barck, K, Corpuz, R, Yao, J, Takkar, R, Lee, W.P, Damico-Beyer, L.A, Carano, R.D, Adams, C, Kelley, R.F, Wang, W, Ferrara, N.
Deposit date:2013-07-10
Release date:2013-08-14
Last modified:2021-10-27
Method:X-RAY DIFFRACTION (2.773 Å)
Cite:Development and Preclinical Characterization of a Humanized Antibody Targeting CXCL12.
Clin.Cancer Res., 19, 2013
4HWU
DownloadVisualize
BU of 4hwu by Molmil
Crystal structure of the Ig-C2 type 1 domain from mouse Fibroblast growth factor receptor 2 (FGFR2) [NYSGRC-005912]
Descriptor: Fibroblast growth factor receptor 2
Authors:Kumar, P.R, Ahmed, M, Banu, R, Bhosle, R, Calarese, D, Celikigil, A, Chamala, S, Chan, M.K, Chowdhury, S, Fiser, A, Garforth, S, Glenn, A.S, Hillerich, B, Khafizov, K, Love, J, Patel, H, Rubinstein, R, Seidel, R, Stead, M, Toro, R, Nathenson, S.G, Almo, S.C, New York Structural Genomics Research Consortium (NYSGRC), Atoms-to-Animals: The Immune Function Network (IFN)
Deposit date:2012-11-08
Release date:2012-11-21
Method:X-RAY DIFFRACTION (2.903 Å)
Cite:Crystal structure of the Ig-C2 type 1 domain from mouse FGFR2 [NYSGRC-005912]
to be published
1YWJ
DownloadVisualize
BU of 1ywj by Molmil
Structure of the FBP11WW1 domain
Descriptor: Formin-binding protein 3
Authors:Pires, J.R, Parthier, C, Aido-Machado, R, Wiedemann, U, Otte, L, Boehm, G, Rudolph, R, Oschkinat, H.
Deposit date:2005-02-18
Release date:2005-04-12
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Structural basis for APPTPPPLPP peptide recognition by the FBP11WW1 domain.
J.Mol.Biol., 348, 2005
4LKR
DownloadVisualize
BU of 4lkr by Molmil
Crystal structure of deoD-3 gene product from Shewanella oneidensis MR-1, NYSGRC target 029437
Descriptor: Purine nucleoside phosphorylase DeoD-type
Authors:Malashkevich, V.N, Bonanno, J.B, Bhosle, R, Toro, R, Hillerich, B, Gizzi, A, Garforth, S, Kar, A, Chan, M.K, Lafluer, J, Patel, H, Matikainen, B, Chamala, S, Lim, S, Celikgil, A, Villegas, G, Evans, B, Love, J, Fiser, A, Khafizov, K, Seidel, R, Almo, S.C, New York Structural Genomics Research Consortium (NYSGRC)
Deposit date:2013-07-08
Release date:2013-07-24
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal structure of deoD-3 gene product from Shewanella oneidensis MR-1, NYSGRC target 029437
To be Published
1OAA
DownloadVisualize
BU of 1oaa by Molmil
MOUSE SEPIAPTERIN REDUCTASE COMPLEXED WITH NADP AND OXALOACETATE
Descriptor: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, OXALOACETATE ION, SEPIAPTERIN REDUCTASE, ...
Authors:Auerbach, G, Herrmann, A, Bacher, A, Huber, R.
Deposit date:1997-08-25
Release date:1999-02-16
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.25 Å)
Cite:The 1.25 A crystal structure of sepiapterin reductase reveals its binding mode to pterins and brain neurotransmitters.
EMBO J., 16, 1997
2VNM
DownloadVisualize
BU of 2vnm by Molmil
Human BACE-1 in complex with 3-(1,1-dioxidotetrahydro-2H-1,2-thiazin- 2-yl)-5-(ethylamino)-N-((1S,2R)-2-hydroxy-1-(phenylmethyl)-3-(((3-(trifluoromethyl)phenyl)methyl)amino)propyl)benzamide
Descriptor: BETA-SECRETASE 1, N-[(1S,2R)-1-benzyl-2-hydroxy-3-{[3-(trifluoromethyl)benzyl]amino}propyl]-3-(1,1-dioxido-1,2-thiazinan-2-yl)-5-(ethylamino)benzamide
Authors:Charrier, N, Clarke, B, Cutler, L, Demont, E, Dingwall, C, Dunsdon, R, East, P, Hawkins, J, Howes, C, Hussain, I, Jeffrey, P, Maile, G, Matico, R, Mosley, J, Naylor, A, OBrien, A, Redshaw, S, Rowland, P, Soleil, V, Smith, K.J, Sweitzer, S, Theobald, P, Vesey, D, Walter, D.S, Wayne, G.
Deposit date:2008-02-05
Release date:2008-05-20
Last modified:2019-05-15
Method:X-RAY DIFFRACTION (1.79 Å)
Cite:Second Generation of Hydroxyethylamine Bace-1 Inhibitors: Optimizing Potency and Oral Bioavailability.
J.Med.Chem., 51, 2008
3WU7
DownloadVisualize
BU of 3wu7 by Molmil
Spatiotemporal development of soaked protein crystal; derivative 250 sec
Descriptor: Lysozyme C, PLATINUM (IV) ION
Authors:Mizutani, R, Saiga, R.
Deposit date:2014-04-23
Release date:2014-07-30
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2 Å)
Cite:Spatiotemporal development of soaked protein crystal
Sci Rep, 4, 2014
4QRZ
DownloadVisualize
BU of 4qrz by Molmil
Crystal structure of sugar transporter atu4361 from agrobacterium fabrum c58, target efi-510558, with bound maltotriose
Descriptor: ABC-TYPE SUGAR TRANSPORTER, alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-beta-D-glucopyranose
Authors:Patskovsky, Y, Toro, R, Bhosle, R, Al Obaidi, N, Stead, M, Washington, E, Glenn, A.S, Chowdhury, S, Evans, B, Hammonds, J, Love, J, Gerlt, J.A, Almo, S.C, Enzyme Function Initiative (EFI)
Deposit date:2014-07-02
Release date:2014-07-16
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.34 Å)
Cite:Crystal Structure of Maltoside Transporter from Agrobacterium Radiobacter, Target Efi-510558
To be Published
4QSD
DownloadVisualize
BU of 4qsd by Molmil
Crystal structure of atu4361 sugar transporter from Agrobacterium Fabrum C58, target efi-510558, with bound sucrose
Descriptor: ABC-TYPE SUGAR TRANSPORTER, beta-D-fructofuranose-(2-1)-alpha-D-glucopyranose
Authors:Patskovsky, Y, Toro, R, Bhosle, R, Al Obaidi, N, Chamala, S, Attonito, J.D, Scott Glenn, A, Chowdhury, S, Lafleur, J, Siedel, R.D, Hillerich, B, Love, J, Whalen, K.L, Gerlt, J.A, Almo, S.C, Enzyme Function Initiative (EFI)
Deposit date:2014-07-03
Release date:2014-08-06
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.34 Å)
Cite:Crystal Structure of Maltoside Transporter Atu4361 from Agrobacterium Fabrum, Target Efi-510558
To be Published
4QTG
DownloadVisualize
BU of 4qtg by Molmil
CRYSTAL STRUCTURE of 5-CARBOXYVANILLATE DECARBOXYLASE LIGW2 (TARGET EFI-505250) FROM NOVOSPHINGOBIUM AROMATICIVORANS DSM 12444 COMPLEXED WITH MANGANESE
Descriptor: 5-CARBOXYVANILLATE DECARBOXYLASE, GLYCEROL, MANGANESE (II) ION
Authors:Patskovsky, Y, Vladimirova, A, Toro, R, Bhosle, R, Gerlt, J.A, Raushel, F.M, Almo, S.C.
Deposit date:2014-07-07
Release date:2014-08-20
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.47 Å)
Cite:Crystal Structure of 5-Carboxyvanillate Decarboxylase LIGW2 from Novosphingobium Aromaticivorans
To be Published
3WRT
DownloadVisualize
BU of 3wrt by Molmil
Wild type beta-lactamase DERIVED FROM CHROMOHALOBACTER SP.560
Descriptor: Beta-lactamase
Authors:Arai, S, Yonezawa, Y, Okazaki, N, Matsumoto, F, Shimizu, R, Yamada, M, Adachi, M, Tamada, T, Tokunaga, H, Ishibashi, M, Tokunaga, M, Kuroki, R.
Deposit date:2014-02-27
Release date:2015-03-04
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Structure of a highly acidic beta-lactamase from the moderate halophile Chromohalobacter sp. 560 and the discovery of a Cs(+)-selective binding site
Acta Crystallogr.,Sect.D, 71, 2015
3WUA
DownloadVisualize
BU of 3wua by Molmil
Spatiotemporal development of soaked protein crystal; derivative 3610 sec
Descriptor: Lysozyme C, PLATINUM (IV) ION
Authors:Mizutani, R, Saiga, R.
Deposit date:2014-04-23
Release date:2014-07-30
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2 Å)
Cite:Spatiotemporal development of soaked protein crystal
Sci Rep, 4, 2014
3WUH
DownloadVisualize
BU of 3wuh by Molmil
Qri7 and AMP complex
Descriptor: ADENOSINE MONOPHOSPHATE, ZINC ION, tRNA N6-adenosine threonylcarbamoyltransferase, ...
Authors:Tominaga, T, Kobayashi, K, Ishii, R, Ishitani, R, Nureki, O.
Deposit date:2014-04-24
Release date:2014-09-17
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.937 Å)
Cite:Structure of Saccharomyces cerevisiae mitochondrial Qri7 in complex with AMP
ACTA CRYSTALLOGR.,SECT.F, 70, 2014
3WPL
DownloadVisualize
BU of 3wpl by Molmil
SPATIOTEMPORAL DEVELOPMENT of SOAKED PROTEIN CRYSTAL; 2510 SEC
Descriptor: Lysozyme C, PLATINUM (IV) ION
Authors:Mizutani, R, Saiga, R.
Deposit date:2014-01-12
Release date:2014-07-30
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2 Å)
Cite:Spatiotemporal development of soaked protein crystal
Sci Rep, 4, 2014
6HHG
DownloadVisualize
BU of 6hhg by Molmil
Crystal Structure of AKT1 in Complex with Covalent-Allosteric AKT Inhibitor 27
Descriptor: RAC-alpha serine/threonine-protein kinase, ~{N}-[2-chloranyl-5-[[1-[[4-(5-oxidanylidene-3-phenyl-6~{H}-1,6-naphthyridin-2-yl)phenyl]methyl]piperidin-4-yl]carbamoylamino]phenyl]propanamide
Authors:Landel, I, Weisner, J, Mueller, M.P, Scheinpflug, R, Rauh, D.
Deposit date:2018-08-28
Release date:2019-02-20
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural and chemical insights into the covalent-allosteric inhibition of the protein kinase Akt.
Chem Sci, 10, 2019
3W90
DownloadVisualize
BU of 3w90 by Molmil
Crystal structure of CMP kinase from Thermus thermophilus HB8
Descriptor: Cytidylate kinase
Authors:Nakagawa, N, Mega, R, Masui, R, Kuramitsu, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2013-03-22
Release date:2013-09-25
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Crystal structure of CMP kinase: insights into initial substrate recognition and reaction mechanisms
To be Published
7ZV5
DownloadVisualize
BU of 7zv5 by Molmil
Crystal structure of SARS Cov-2 main protease in complex with an inhibitor 4
Descriptor: 3C-like proteinase nsp5, DIMETHYL SULFOXIDE, inhibitor TRIP5
Authors:Rahimova, R, Di Micco, S, Marquez, J.A.
Deposit date:2022-05-13
Release date:2022-11-30
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.999 Å)
Cite:Rational design of the zonulin inhibitor AT1001 derivatives as potential anti SARS-CoV-2.
Eur.J.Med.Chem., 244, 2022

222415

PDB entries from 2024-07-10

PDB statisticsPDBj update infoContact PDBjnumon