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PDB: 46 results

1LI5
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Crystal Structure of Cysteinyl-tRNA Synthetase
Descriptor: CYSTEINYL-TRNA SYNTHETASE, ZINC ION
Authors:Newberry, K.J, Hou, Y.-M, Perona, J.J.
Deposit date:2002-04-17
Release date:2002-04-26
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural origins of amino acid selection without editing by cysteinyl-tRNA synthetase
EMBO J., 21, 2002
1NYL
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Unliganded glutaminyl-tRNA synthetase
Descriptor: Glutaminyl-tRNA synthetase
Authors:Sherlin, L.D, Perona, J.P.
Deposit date:2003-02-12
Release date:2003-02-25
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:tRNA-Dependent Active Site Assembly in a Class I Aminoacyl-tRNA Synthetase.
Structure, 11, 2003
1ZJW
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Glutaminyl-tRNA synthetase complexed to glutamine and 2'deoxy A76 glutamine tRNA
Descriptor: ADENOSINE MONOPHOSPHATE, GLUTAMINE, Glutaminyl-tRNA, ...
Authors:Gruic-Sovulj, I, Uter, N, Bullock, T, Perona, J.J.
Deposit date:2005-05-01
Release date:2005-06-07
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:tRNA-dependent Aminoacyl-adenylate Hydrolysis by a Nonediting Class I Aminoacyl-tRNA Synthetase.
J.Biol.Chem., 280, 2005
2GE5
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EcoRV Restriction Endonuclease C-terminal deletion mutant/GATATC/Ca2+
Descriptor: 5'-D(*AP*AP*AP*GP*AP*TP*AP*TP*CP*TP*T)-3', CALCIUM ION, Type II restriction enzyme EcoRV
Authors:Hiller, D.A, Perona, J.J.
Deposit date:2006-03-17
Release date:2006-07-04
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Positively Charged C-Terminal Subdomains of EcoRV Endonuclease: Contributions to DNA Binding, Bending, and Cleavage.
Biochemistry, 45, 2006
1O0B
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BU of 1o0b by Molmil
CRYSTAL STRUCTURE OF L-GLUTAMINE AND AMPCPP BOUND TO GLUTAMINE AMINOACYL TRNA SYNTHETASE
Descriptor: ADENOSINE MONOPHOSPHATE, GLUTAMINE, Glutaminyl tRNA, ...
Authors:Bullock, T.L, Perona, J.J.
Deposit date:2003-02-20
Release date:2003-04-15
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Amino Acid Discrimination by a class I aminoacyl-tRNA synthetase specified by negative determinants
J.Mol.Biol., 328, 2003
1O0C
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CRYSTAL STRUCTURE OF L-GLUTAMATE AND AMPCPP BOUND TO GLUTAMINE AMINOACYL TRNA SYNTHETASE
Descriptor: ADENOSINE MONOPHOSPHATE, GLUTAMIC ACID, Glutaminyl tRNA, ...
Authors:Bullock, T.L, Perona, J.J.
Deposit date:2003-02-20
Release date:2003-04-15
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Amino Acid Discrimination by a class I aminoacyl-tRNA synthetase specified by negative determinants
J.Mol.Biol., 328, 2003
1EXD
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BU of 1exd by Molmil
CRYSTAL STRUCTURE OF A TIGHT-BINDING GLUTAMINE TRNA BOUND TO GLUTAMINE AMINOACYL TRNA SYNTHETASE
Descriptor: ADENOSINE MONOPHOSPHATE, GLUTAMINE TRNA APTAMER, GLUTAMINYL-TRNA SYNTHETASE, ...
Authors:Bullock, T.L, Sherlin, L.D, Perona, J.J.
Deposit date:2000-05-02
Release date:2000-05-15
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Tertiary core rearrangements in a tight binding transfer RNA aptamer.
Nat.Struct.Biol., 7, 2000
1EON
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ECORV BOUND TO 3'-S-PHOSPHOROTHIOLATE DNA AND CA2+
Descriptor: ACETIC ACID, CHLORIDE ION, DNA (5'-D(*AP*AP*AP*GP*AP*(TSP)P*AP*TP*CP*TP*T)-3'), ...
Authors:Horton, N.C, Connolly, B.A, Perona, J.J.
Deposit date:2000-03-23
Release date:2000-04-04
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Inhibition of EcoRV Endonuclease by Deoxyribo-3'-S-phosphorothiolates: A High-Resolution X-ray Crystallographic Study
J.Am.Chem.Soc., 122, 2000
2GQQ
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Crystal Structure of E. coli Leucine-responsive regulatory protein (Lrp)
Descriptor: Leucine-responsive regulatory protein
Authors:de los Rios, S, Perona, J.J.
Deposit date:2006-04-21
Release date:2007-03-06
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Structure of the Escherichia coli Leucine-responsive Regulatory Protein Lrp Reveals a Novel Octameric Assembly.
J.Mol.Biol., 366, 2007
1EO3
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INHIBITION OF ECORV ENDONUCLEASE BY DEOXYRIBO-3'-S-PHOSPHOROTHIOLATES: A HIGH RESOLUTION X-RAY CRYSTALLOGRAPHIC STUDY
Descriptor: ACETIC ACID, DNA (5'-D(*CP*AP*AP*GP*AP*(TSP)P*AP*TP*CP*TP*T)-3'), MAGNESIUM ION, ...
Authors:Horton, N.C, Connolly, B.A, Perona, J.J.
Deposit date:2000-03-21
Release date:2000-04-04
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2 Å)
Cite:Inhibition of EcoRV Endonuclease by Deoxyribo-3'-S-phosphorothiolates: A High-Resolution X-ray Crystallographic Study
J.Am.Chem.Soc., 122, 2000
1EO4
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ECORV BOUND TO MN2+ AND COGNATE DNA CONTAINING A 3'S SUBSTITION AT THE CLEAVAGE SITE
Descriptor: ACETIC ACID, DNA (5'-D(*CP*AP*AP*GP*AP*(TSP)P*AP*TP*CP*TP*T)-3'), MANGANESE (II) ION, ...
Authors:Horton, N.C, Connolly, B.A, Perona, J.J.
Deposit date:2000-03-21
Release date:2000-04-04
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Inhibition of EcoRV Endonuclease by Deoxyribo-3'-S-phosphorothiolates: A High-Resolution X-ray Crystallographic Study
J.Am.Chem.Soc., 122, 2000
1EUY
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GLUTAMINYL-TRNA SYNTHETASE COMPLEXED WITH A TRNA MUTANT AND AN ACTIVE SITE INHIBITOR
Descriptor: 5'-O-[N-(L-GLUTAMINYL)-SULFAMOYL]ADENOSINE, GLUTAMINYL TRNA, GLUTAMINYL-TRNA SYNTHETASE
Authors:Sherlin, L.D, Bullock, T.L, Newberry, K.J, Lipman, R.S.A, Hou, Y.-M, Beijer, B, Sproat, B.S, Perona, J.J.
Deposit date:2000-04-19
Release date:2000-06-04
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Influence of transfer RNA tertiary structure on aminoacylation efficiency by glutaminyl and cysteinyl-tRNA synthetases.
J.Mol.Biol., 299, 2000
1EOO
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ECORV BOUND TO COGNATE DNA
Descriptor: DNA (5'-D(*GP*AP*AP*GP*AP*TP*AP*TP*CP*TP*TP*C)-3'), TYPE II RESTRICTION ENZYME ECORV
Authors:Horton, N.C, Perona, J.J.
Deposit date:2000-03-23
Release date:2000-04-04
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.16 Å)
Cite:Crystallographic snapshots along a protein-induced DNA-bending pathway.
Proc.Natl.Acad.Sci.USA, 97, 2000
1EOP
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ECORV BOUND TO COGNATE DNA
Descriptor: DNA (5'-D(*GP*AP*AP*GP*AP*TP*AP*TP*CP*TP*TP*C)-3'), TYPE II RESTRICTION ENZYME ECORV
Authors:Horton, N.C, Perona, J.J.
Deposit date:2000-03-23
Release date:2000-04-04
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Crystallographic snapshots along a protein-induced DNA-bending pathway.
Proc.Natl.Acad.Sci.USA, 97, 2000
1EUQ
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CRYSTAL STRUCTURE OF GLUTAMINYL-TRNA SYNTHETASE COMPLEXED WITH A TRNA-GLN MUTANT AND AN ACTIVE-SITE INHIBITOR
Descriptor: 5'-O-[N-(L-GLUTAMINYL)-SULFAMOYL]ADENOSINE, GLUTAMINYL TRNA, GLUTAMINYL-TRNA SYNTHETASE
Authors:Sherlin, L.D, Bullock, T.L, Newberry, K.J, Lipman, R.S.A, Hou, Y.-M, Beijer, B, Sproat, B.S, Perona, J.J.
Deposit date:2000-04-17
Release date:2000-06-04
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Influence of transfer RNA tertiary structure on aminoacylation efficiency by glutaminyl and cysteinyl-tRNA synthetases.
J.Mol.Biol., 299, 2000
2I9K
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Engineered Extrahelical Base Destabilization Enhances Sequence Discrimination of DNA Methyltransferase M.HhaI
Descriptor: 5'-D(*T*GP*AP*TP*AP*GP*CP*GP*CP*TP*AP*TP*C)-3', Modification methylase HhaI, S-ADENOSYL-L-HOMOCYSTEINE
Authors:Youngblood, B, Shieh, F.K, De Los Rios, S, Perona, J.J, Reich, N.O.
Deposit date:2006-09-05
Release date:2006-10-10
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:Engineered Extrahelical Base Destabilization Enhances Sequence Discrimination of DNA Methyltransferase M.HhaI
J.Mol.Biol., 362, 2006
1SX5
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K38A EcoRV bound to cleaved DNA and Mn2+: P1 crystal form
Descriptor: 5'-D(*AP*AP*AP*GP*AP*T)-3', 5'-D(P*AP*TP*CP*TP*T)-3', MANGANESE (II) ION, ...
Authors:Horton, N.C, Perona, J.J.
Deposit date:2004-03-30
Release date:2004-04-06
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:DNA cleavage by EcoRV endonuclease: Two metal ions in three metal ion binding sites
Biochemistry, 43, 2004
1SX8
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EcoRV bound to cognate DNA and Mn2+
Descriptor: 5'-D(*C*AP*AP*GP*AP*TP*AP*TP*CP*TP*T)-3', MANGANESE (II) ION, Type II restriction enzyme EcoRV
Authors:Horton, N.C, Perona, J.J.
Deposit date:2004-03-30
Release date:2004-04-06
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:DNA Cleavage by EcoRV Endonuclease: Two Metal Ions in Three Metal Ion Binding Sites
Biochemistry, 43, 2004
1SUZ
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The structure of K92A EcoRV bound to cognate DNA and Mg2+
Descriptor: 5'-D(*C*AP*AP*GP*AP*TP*AP*TP*CP*TP*T)-3', MAGNESIUM ION, SODIUM ION, ...
Authors:Horton, N.C, Perona, J.J.
Deposit date:2004-03-26
Release date:2004-04-06
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:DNA Cleavage by EcoRV Endonuclease: Two Metal Ions in Three Metal Ion Binding Sites.
Biochemistry, 43, 2004
1STX
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Structure of the K38A mutant of EcoRV bound to cognate DNA and Mn2+
Descriptor: 5'-D(*AP*AP*AP*GP*AP*T)-3', 5'-D(P*AP*TP*CP*TP*T)-3', MANGANESE (II) ION, ...
Authors:Horton, N.C, Perona, J.J.
Deposit date:2004-03-25
Release date:2004-04-06
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:DNA cleavage by EcoRV endonuclease: two metal ions in three metal ion binding sites
Biochemistry, 43, 2004
1RV5
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COMPLEX OF ECORV ENDONUCLEASE WITH D(AAAGAT)/D(ATCTT)
Descriptor: 5'-D(*AP*AP*AP*GP*AP*T*AP*TP*CP*TP*T)-3', ECORV ENDONUCLEASE
Authors:Horton, N.C, Perona, J.J.
Deposit date:1998-06-01
Release date:1998-11-11
Last modified:2023-08-02
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Role of protein-induced bending in the specificity of DNA recognition: crystal structure of EcoRV endonuclease complexed with d(AAAGAT) + d(ATCTT).
J.Mol.Biol., 277, 1998
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