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PDB: 31 results

8QAJ
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BU of 8qaj by Molmil
NMR solution structure of C-terminal domain of CDNF
Descriptor: Cerebral dopamine neurotrophic factor
Authors:Tossavainen, H, Permi, P.
Deposit date:2023-08-22
Release date:2024-09-11
Method:SOLUTION NMR
Cite:NMR solution structure of C-terminal domain of CDNF
To Be Published
2AAV
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BU of 2aav by Molmil
Solution NMR structure of Filamin A domain 17
Descriptor: Filamin A
Authors:Nakamura, F, Pudas, R, Heikkinen, O, Permi, P, Kilpelainen, I, Munday, A.D, Hartwig, J.H, Stossel, T.P, Ylanne, J.
Deposit date:2005-07-14
Release date:2006-05-02
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:The structure of the GPIb-filamin A complex
Blood, 107, 2006
2ALB
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BU of 2alb by Molmil
NMR structure of the N-terminal domain a of the glycoprotein chaperone ERp57
Descriptor: Protein disulfide-isomerase A3
Authors:Silvennoinen, L, Tossavainen, H, Myllyharju, J, Permi, P.
Deposit date:2005-08-05
Release date:2006-08-15
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:NMR structure of the N-terminal domain a of the glycoprotein chaperone ERp57
To be Published
1SZL
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BU of 1szl by Molmil
F-spondin TSR domain 1
Descriptor: F-spondin
Authors:Tossavainen, H, Paakkonen, K, Permi, P, Kilpelainen, I, Guntert, P.
Deposit date:2004-04-06
Release date:2005-04-19
Last modified:2022-03-02
Method:SOLUTION NMR
Cite:Solution structures of the first and fourth TSR domains of F-spondin
Proteins, 64, 2006
7OJ9
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BU of 7oj9 by Molmil
NMR solution structure of SNX9 SH3 - EEEV nsP3 peptide complex
Descriptor: EEEV nsP3 peptide, Sorting nexin-9
Authors:Tossavainen, H, Permi, P.
Deposit date:2021-05-14
Release date:2022-04-13
Last modified:2024-06-19
Method:SOLUTION NMR
Cite:Structure of SNX9 SH3 in complex with a viral ligand reveals the molecular basis of its unique specificity for alanine-containing class I SH3 motifs.
Structure, 30, 2022
5I22
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BU of 5i22 by Molmil
Amphiphysin SH3 in complex with Chikungunya virus nsP3 peptide
Descriptor: CHIKV nsP3 peptide, Myc box-dependent-interacting protein 1
Authors:Tossavainen, H, Aitio, O, Hellman, M, Saksela, K, Permi, P.
Deposit date:2016-02-04
Release date:2016-06-15
Last modified:2024-06-19
Method:SOLUTION NMR
Cite:Structural Basis of the High Affinity Interaction between the Alphavirus Nonstructural Protein-3 (nsP3) and the SH3 Domain of Amphiphysin-2.
J.Biol.Chem., 291, 2016
1NYA
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BU of 1nya by Molmil
NMR SOLUTION STRUCTURE OF CALERYTHRIN, AN EF-HAND CALCIUM-BINDING PROTEIN
Descriptor: CALCIUM ION, Calerythrin
Authors:Tossavainen, H, Permi, P, Annila, A, Kilpelainen, I, Drakenberg, T.
Deposit date:2003-02-12
Release date:2003-08-05
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:NMR solution structure of calerythrin, an EF-hand calcium-binding protein from Saccharopolyspora erythraea
Eur.J.Biochem., 270, 2003
2BBX
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BU of 2bbx by Molmil
NMR solution structure of the TSR domain of malaria TRAP protein
Descriptor: Thrombospondin-related anonymous protein
Authors:Tossavainen, H, Permi, P, Kilpelainen, I.
Deposit date:2005-10-18
Release date:2006-08-08
Last modified:2024-10-30
Method:SOLUTION NMR
Cite:The layered fold of the TSR domain of P. falciparum TRAP contains a heparin binding site.
Protein Sci., 15, 2006
5KQB
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BU of 5kqb by Molmil
Identification and structural characterization of LytU
Descriptor: Peptidase M23, ZINC ION
Authors:Raulinaitis, V, Tossavainen, H, Permi, P.
Deposit date:2016-07-06
Release date:2017-08-02
Last modified:2024-06-19
Method:SOLUTION NMR
Cite:Identification and structural characterization of LytU, a unique peptidoglycan endopeptidase from the lysostaphin family.
Sci Rep, 7, 2017
5KQC
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BU of 5kqc by Molmil
Identification and structural characterization of LytU
Descriptor: Peptidase M23, ZINC ION
Authors:Tossavainen, H, Raulinaitis, V, Permi, P.
Deposit date:2016-07-06
Release date:2017-08-02
Last modified:2024-06-19
Method:SOLUTION NMR
Cite:Identification and structural characterization of LytU, a unique peptidoglycan endopeptidase from the lysostaphin family.
Sci Rep, 7, 2017
2V6Z
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BU of 2v6z by Molmil
Solution Structure of Amino-Terminal Domain of Human DNA Polymerase Epsilon Subunit B
Descriptor: DNA POLYMERASE EPSILON SUBUNIT 2
Authors:Nuutinen, T, Fredriksson, K, Tossavainen, H, Pospiech, H, Pirila, P, Permi, P, Annila, A, Syvaoja, J.E.
Deposit date:2007-07-24
Release date:2008-08-05
Last modified:2024-06-19
Method:SOLUTION NMR
Cite:The Solution Structure of the Amino-Terminal Domain of Human DNA Polymerase Epsilon Subunit B is Homologous to C-Domains of Aaa+ Proteins.
Nucleic Acids Res., 36, 2008
4F1K
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BU of 4f1k by Molmil
Crystal structure of the MG2+ free VWA domain of plasmodium falciparum trap protein
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, SULFATE ION, ...
Authors:Pihlajamaa, T, Knuuti, J, Kajander, T, Sharma, A, Permi, P.
Deposit date:2012-05-07
Release date:2013-01-30
Last modified:2013-05-22
Method:X-RAY DIFFRACTION (1.87 Å)
Cite:Structure of Plasmodium falciparum TRAP (thrombospondin-related anonymous protein) A domain highlights distinct features in apicomplexan von Willebrand factor A homologues.
Biochem.J., 450, 2013
5NMY
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BU of 5nmy by Molmil
NMR solution structure of lysostaphin
Descriptor: Lysostaphin, ZINC ION
Authors:Tossavainen, H, Raulinaitis, V, Permi, P.
Deposit date:2017-04-07
Release date:2018-05-16
Last modified:2024-06-19
Method:SOLUTION NMR
Cite:Structural and Functional Insights Into Lysostaphin-Substrate Interaction.
Front Mol Biosci, 5, 2018
5N9Q
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BU of 5n9q by Molmil
Structure of A. thaliana RCD1(468-567)
Descriptor: Inactive poly [ADP-ribose] polymerase RCD1
Authors:Tossavainen, H, Hellman, M, Vainonen, J, Kangasjarvi, J, Permi, P.
Deposit date:2017-02-27
Release date:2018-03-14
Last modified:2024-06-19
Method:SOLUTION NMR
Cite:Arabidopsis RCD1 coordinates chloroplast and mitochondrial functions through interaction with ANAC transcription factors.
Elife, 8, 2019
4F1J
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BU of 4f1j by Molmil
Crystal structure of the MG2+ loaded VWA domain of plasmodium falciparum trap protein
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, MAGNESIUM ION, ...
Authors:Pihlajamaa, T, Knuuti, J, Kajander, T, Sharma, A, Permi, P.
Deposit date:2012-05-07
Release date:2013-01-30
Last modified:2013-05-22
Method:X-RAY DIFFRACTION (1.73 Å)
Cite:Structure of Plasmodium falciparum TRAP (thrombospondin-related anonymous protein) A domain highlights distinct features in apicomplexan von Willebrand factor A homologues.
Biochem.J., 450, 2013
2ROL
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BU of 2rol by Molmil
Structural Basis of PxxDY motif recognition in SH3 binding
Descriptor: 12-meric peptide from T-cell surface glycoprotein CD3 epsilon chain, Epidermal growth factor receptor kinase substrate 8-like protein 1
Authors:Aitio, O, Hellman, M, Kesti, T, Kleino, I, Samuilova, O, Tossavainen, H, Paakkonen, K, Saksela, K, Permi, P.
Deposit date:2008-04-02
Release date:2009-03-03
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Structural basis of PxxDY motif recognition in SH3 binding
J.Mol.Biol., 382, 2008
2UUR
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BU of 2uur by Molmil
N-terminal NC4 domain of collagen IX
Descriptor: 1,2-ETHANEDIOL, COLLAGEN ALPHA-1(IX) CHAIN, SULFATE ION, ...
Authors:Leppanen, V.-M, Tossavainen, H, Permi, P, Lehtio, L, Ronnholm, G, Goldman, A, Kilpelainen, I, Pihlajamaa, T.
Deposit date:2007-03-07
Release date:2007-06-05
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal Structure of the N-Terminal Nc4 Domain of Collagen Ix, a Zinc Binding Member of the Laminin-Neurexin-Sex Hormone Binding Globulin (Lns) Domain Family.
J.Biol.Chem., 282, 2007
2K7Q
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BU of 2k7q by Molmil
Filamin A Ig-like domains 18-19
Descriptor: Filamin-A
Authors:Heikkinen, O.K, Kilpelainen, I, Koskela, H, Permi, P, Heikkinen, S, Ylanne, J.
Deposit date:2008-08-19
Release date:2009-07-07
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Atomic structures of two novel immunoglobulin-like domain pairs in the actin cross-linking protein filamin
J.Biol.Chem., 284, 2009
2K7P
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BU of 2k7p by Molmil
Filamin A Ig-like domains 16-17
Descriptor: Filamin-A
Authors:Heikkinen, O.K, Kilpelainen, I, Koskela, H, Permi, P, Heikkinen, S, Ylanne, J.
Deposit date:2008-08-19
Release date:2009-07-07
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Atomic structures of two novel immunoglobulin-like domain pairs in the actin cross-linking protein filamin
J.Biol.Chem., 284, 2009
2KVE
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BU of 2kve by Molmil
C-terminal domain of mesencephalic astrocyte-derived neurotrophic factor (MANF)
Descriptor: Mesencephalic astrocyte-derived neurotrophic factor
Authors:Hellman, M.H, Saarma, M, Permi, P.
Deposit date:2010-03-12
Release date:2010-11-03
Last modified:2024-10-16
Method:SOLUTION NMR
Cite:Mesencephalic Astrocyte-derived Neurotrophic Factor (MANF) Has a Unique Mechanism to Rescue Apoptotic Neurons
J.Biol.Chem., 286, 2011
2KVD
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BU of 2kvd by Molmil
Mesencephalic astrocyte-derived neurotrophic factor (MANF)
Descriptor: Mesencephalic astrocyte-derived neurotrophic factor
Authors:Hellman, M.H, Peranen, J, Saarma, M, Permi, P.
Deposit date:2010-03-12
Release date:2010-11-03
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Mesencephalic Astrocyte-derived Neurotrophic Factor (MANF) Has a Unique Mechanism to Rescue Apoptotic Neurons
J.Biol.Chem., 286, 2011
2KDG
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BU of 2kdg by Molmil
Solution Structure of the 1st Ig domain of Myotilin
Descriptor: Myotilin
Authors:Heikkinen, O, Kilpelainen, I, Permi, P, Koskela, H, Ylanne, J, Carpen, O.
Deposit date:2009-01-08
Release date:2009-07-21
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Solution structure of the first immunoglobulin domain of human myotilin
J.Biomol.Nmr, 44, 2009
2JZV
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BU of 2jzv by Molmil
Solution structure of S. aureus PrsA-PPIase
Descriptor: Foldase protein prsA
Authors:Seppala, R, Tossavainen, H, Heikkinen, S, Koskela, H, Kontinen, V, Permi, P.
Deposit date:2008-01-21
Release date:2009-01-20
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Solution structure of the parvulin-type PPIase domain of Staphylococcus aureus PrsA - Implications for the catalytic mechanism of parvulins.
Bmc Struct.Biol., 9, 2009
2K2M
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BU of 2k2m by Molmil
Structural Basis of PxxDY Motif Recognition in SH3 Binding
Descriptor: Eps8-like protein 1
Authors:Aitio, O, Hellman, M, Kesti, T, Kleino, I, Samuilova, O, Tossavainen, H, Saksela, K, Permi, P.
Deposit date:2008-04-02
Release date:2009-02-17
Last modified:2024-05-08
Method:SOLUTION NMR
Cite:Structural basis of PxxDY motif recognition in SH3 binding.
J.Mol.Biol., 382, 2008
2MF6
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BU of 2mf6 by Molmil
Solution NMR structure of Chimeric Avidin, ChiAVD(I117Y), in the biotin bound form
Descriptor: Avidin, Avidin-related protein 4/5
Authors:Tossavainen, H, Kukkurainen, S, Maatta, J.A.E, Pihlajamaa, T, Hytonen, V.P, Kulomaa, M.S, Permi, P.
Deposit date:2013-10-07
Release date:2014-08-06
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Chimeric Avidin - NMR Structure and Dynamics of a 56 kDa Homotetrameric Thermostable Protein
Plos One, 9, 2014

 

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