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PDB: 163 results

7JZL
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BU of 7jzl by Molmil
SARS-CoV-2 spike in complex with LCB1 (2RBDs open)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, LCB1, ...
Authors:Park, Y.J, Veesler, D, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Deposit date:2020-09-02
Release date:2020-09-23
Last modified:2020-11-04
Method:ELECTRON MICROSCOPY (2.7 Å)
Cite:De novo design of picomolar SARS-CoV-2 miniprotein inhibitors.
Science, 370, 2020
7JZN
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SARS-CoV-2 spike in complex with LCB3 (2RBDs open)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, LCB3, ...
Authors:Park, Y.J, Veesler, D, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Deposit date:2020-09-02
Release date:2020-09-23
Last modified:2020-11-04
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:De novo design of picomolar SARS-CoV-2 miniprotein inhibitors.
Science, 370, 2020
7JV6
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SARS-CoV-2 spike in complex with the S2H13 neutralizing antibody (closed conformation)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, S2H13 Fab heavy chain, ...
Authors:Park, Y.J, Tortorici, M.A, Walls, A.C, Czudnochowski, N, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Snell, G, Veesler, D.
Deposit date:2020-08-20
Release date:2020-10-14
Last modified:2021-06-23
Method:ELECTRON MICROSCOPY (3 Å)
Cite:Mapping Neutralizing and Immunodominant Sites on the SARS-CoV-2 Spike Receptor-Binding Domain by Structure-Guided High-Resolution Serology.
Cell, 183, 2020
7JVC
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BU of 7jvc by Molmil
SARS-CoV-2 spike in complex with the S2A4 neutralizing antibody Fab fragment
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, S2A4 Fab heavy chain, ...
Authors:Park, Y.J, Tortorici, M.A, Walls, A.C, Czudnochowski, N, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Snell, G, Veesler, D.
Deposit date:2020-08-20
Release date:2020-10-14
Last modified:2021-06-23
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Mapping Neutralizing and Immunodominant Sites on the SARS-CoV-2 Spike Receptor-Binding Domain by Structure-Guided High-Resolution Serology.
Cell, 183, 2020
2ZD7
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BU of 2zd7 by Molmil
The structure of VPS75 (Vacuolar protein sorting-associated protein 75)
Descriptor: EVDLPLSDEEPSS, Vacuolar protein sorting-associated protein 75
Authors:Park, Y.J, Luger, K.
Deposit date:2007-11-20
Release date:2008-08-12
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Histone chaperone specificity in Rtt109 activation.
Nat.Struct.Mol.Biol., 15, 2008
2N50
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BU of 2n50 by Molmil
Novel Structural Components Contribute to the High Thermal Stability of Acyl Carrier Protein from Enterococcus faecalis
Descriptor: Acyl carrier protein
Authors:Park, Y, Jung, M, Song, H, Jeong, K, Kim, Y.
Deposit date:2015-07-02
Release date:2015-12-09
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Novel Structural Components Contribute to the High Thermal Stability of Acyl Carrier Protein from Enterococcus faecalis.
J. Biol. Chem., 291, 2016
3T1I
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BU of 3t1i by Molmil
Crystal Structure of Human Mre11: Understanding Tumorigenic Mutations
Descriptor: 2,3-DIHYDROXY-1,4-DITHIOBUTANE, Double-strand break repair protein MRE11A, GLYCEROL, ...
Authors:Park, Y.B, Chae, J, Kim, Y, Cho, Y.
Deposit date:2011-07-22
Release date:2011-11-30
Method:X-RAY DIFFRACTION (3 Å)
Cite:Crystal structure of human mre11: understanding tumorigenic mutations
Structure, 19, 2011
3STB
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BU of 3stb by Molmil
A complex of two editosome proteins and two nanobodies
Descriptor: MP18 RNA editing complex protein, RNA-editing complex protein MP42, single domain antibody VHH
Authors:Park, Y.-J, Hol, W.
Deposit date:2011-07-09
Release date:2011-11-02
Last modified:2019-07-17
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structure of a heterodimer of editosome interaction proteins in complex with two copies of a cross-reacting nanobody.
Nucleic Acids Res., 40, 2012
7JXC
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BU of 7jxc by Molmil
Mapping neutralizing and immunodominant sites on the SARS-CoV-2 spike receptor-binding domain by structure-guided high-resolution serology
Descriptor: NONAETHYLENE GLYCOL, S2H14 antigen-binding (Fab) fragment
Authors:Park, Y.J, Tortorici, M.A, Walls, A.C, Czudnochowski, N, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Snell, G, Veesler, D.
Deposit date:2020-08-27
Release date:2020-10-14
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.47 Å)
Cite:Mapping Neutralizing and Immunodominant Sites on the SARS-CoV-2 Spike Receptor-Binding Domain by Structure-Guided High-Resolution Serology.
Cell, 183, 2020
7JXD
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BU of 7jxd by Molmil
Mapping neutralizing and immunodominant sites on the SARS-CoV-2 spike receptor-binding domain by structure-guided high-resolution serology
Descriptor: S2A4 antigen-binding (Fab) fragment
Authors:Park, Y.J, Tortorici, M.A, Walls, A.C, Czudnochowski, N, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Snell, G, Veesler, D.
Deposit date:2020-08-27
Release date:2020-10-14
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Mapping Neutralizing and Immunodominant Sites on the SARS-CoV-2 Spike Receptor-Binding Domain by Structure-Guided High-Resolution Serology.
Cell, 183, 2020
3AUZ
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BU of 3auz by Molmil
Crystal structure of Mre11 with manganese
Descriptor: DNA double-strand break repair protein mre11, GLYCEROL, MANGANESE (II) ION
Authors:Park, Y.B, Cho, Y.
Deposit date:2011-02-18
Release date:2011-05-25
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (3.206 Å)
Cite:Crystal Structure of the Mre11-Rad50-ATP S Complex: Understanding the Interplay between Mre11 and Rad50
To be Published
7E75
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BU of 7e75 by Molmil
Crystal structure of human ERK2 mutant (G37C)
Descriptor: Mitogen-activated protein kinase 1
Authors:Park, Y.S, Kim, M, Ryu, S.E.
Deposit date:2021-02-25
Release date:2022-03-02
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.481 Å)
Cite:Structural mechanism of inhibitor-resistance by ERK2 mutations
Biodesign, 9, 2021
7E73
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BU of 7e73 by Molmil
Crystal structure of human ERK2 mutant (Y36H)
Descriptor: Mitogen-activated protein kinase 1, SULFATE ION
Authors:Park, Y.S, Kim, M, Ryu, S.E.
Deposit date:2021-02-25
Release date:2022-03-02
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.28 Å)
Cite:Structural mechanism of inhibitor-resistance by ERK2 mutations
Biodesign, 9, 2021
7JV2
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BU of 7jv2 by Molmil
SARS-CoV-2 spike in complex with the S2H13 neutralizing antibody Fab fragment (local refinement of the receptor-binding motif and Fab variable domains)
Descriptor: S2H13 Fab heavy chain, S2H13 Fab light chain, Spike glycoprotein
Authors:Park, Y.J, Tortorici, M.A, Walls, A.C, Czudnochowski, N, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Snell, G, Veesler, D.
Deposit date:2020-08-20
Release date:2020-10-14
Last modified:2021-01-27
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:Mapping Neutralizing and Immunodominant Sites on the SARS-CoV-2 Spike Receptor-Binding Domain by Structure-Guided High-Resolution Serology.
Cell, 183, 2020
7JZM
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BU of 7jzm by Molmil
SARS-CoV-2 spike in complex with LCB3 (local refinement of the RBD and LCB3)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, LCB3, Spike glycoprotein
Authors:Park, Y.J, Veesler, D, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Deposit date:2020-09-02
Release date:2020-09-23
Last modified:2020-11-04
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:De novo design of picomolar SARS-CoV-2 miniprotein inhibitors.
Science, 370, 2020
7JZU
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BU of 7jzu by Molmil
SARS-CoV-2 spike in complex with LCB1 (local refinement of the RBD and LCB1)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, LCB1, Spike glycoprotein
Authors:Park, Y.J, Veesler, D, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Deposit date:2020-09-02
Release date:2020-09-23
Last modified:2020-11-04
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:De novo design of picomolar SARS-CoV-2 miniprotein inhibitors.
Science, 370, 2020
7JVA
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BU of 7jva by Molmil
SARS-CoV-2 spike in complex with the S2A4 neutralizing antibody Fab fragment (local refinement of the receptor-binding domain and Fab variable domains)
Descriptor: S2A4 Fab heavy chain, S2A4 Fab light chain, Spike glycoprotein, ...
Authors:Park, Y.J, Tortorici, M.A, Walls, A.C, Czudnochowski, N, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Snell, G, Veesler, D.
Deposit date:2020-08-20
Release date:2020-10-14
Last modified:2021-01-27
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Mapping Neutralizing and Immunodominant Sites on the SARS-CoV-2 Spike Receptor-Binding Domain by Structure-Guided High-Resolution Serology.
Cell, 183, 2020
1CA9
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BU of 1ca9 by Molmil
STRUCTURE OF TNF RECEPTOR ASSOCIATED FACTOR 2 IN COMPLEX WITH A PEPTIDE FROM TNF-R2
Descriptor: PROTEIN (TNF RECEPTOR ASSOCIATED FACTOR 2), PROTEIN (TNF-R2)
Authors:Park, Y.C, Burkitt, V, Villa, A.R, Tong, L, Wu, H.
Deposit date:1999-02-25
Release date:1999-04-12
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural basis for self-association and receptor recognition of human TRAF2.
Nature, 398, 1999
2AYU
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BU of 2ayu by Molmil
The structure of nucleosome assembly protein suggests a mechanism for histone binding and shuttling
Descriptor: Nucleosome assembly protein
Authors:Park, Y.J, Luger, K.
Deposit date:2005-09-08
Release date:2006-02-07
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3 Å)
Cite:The structure of nucleosome assembly protein 1.
Proc.Natl.Acad.Sci.Usa, 103, 2006
1CA4
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BU of 1ca4 by Molmil
STRUCTURE OF TNF RECEPTOR ASSOCIATED FACTOR 2 (TRAF2)
Descriptor: PROTEIN (TNF RECEPTOR ASSOCIATED FACTOR 2)
Authors:Park, Y.C, Burkitt, V, Villa, A.R, Tong, L, Wu, H.
Deposit date:1999-02-23
Release date:1999-04-12
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural basis for self-association and receptor recognition of human TRAF2.
Nature, 398, 1999
2Z2R
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BU of 2z2r by Molmil
Nucleosome assembly proteins I (NAP-1, 74-365)
Descriptor: Nucleosome assembly protein
Authors:Park, Y.J, Luger, K.
Deposit date:2007-05-25
Release date:2008-03-11
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:A beta-hairpin comprising the nuclear localization sequence sustains the self-associated states of nucleosome assembly protein 1
J.Mol.Biol., 375, 2008
4OK7
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BU of 4ok7 by Molmil
Structure of bacteriophage SPN1S endolysin from Salmonella typhimurium
Descriptor: Endolysin, GLYCEROL, SULFATE ION
Authors:Park, Y, Lim, J, Kong, M, Ryu, S, Rhee, S.
Deposit date:2014-01-22
Release date:2014-03-19
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structure of bacteriophage SPN1S endolysin reveals an unusual two-module fold for the peptidoglycan lytic and binding activity.
Mol.Microbiol., 92, 2014
4RSX
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BU of 4rsx by Molmil
The structure of the effector protein from Pseudomonas syringae pv. tomato strain DC3000
Descriptor: Type III effector HopA1
Authors:Park, Y, Shin, I, Rhee, S.
Deposit date:2014-11-11
Release date:2015-03-11
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.303 Å)
Cite:Crystal structure of the effector protein HopA1 from Pseudomonas syringae
J.Struct.Biol., 189, 2015
2N40
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BU of 2n40 by Molmil
Solution structure of the link module of human tsg-6 in presence of a chondroitin 4-sulfate hexasaccharide
Descriptor: Tumor necrosis factor-inducible gene 6 protein
Authors:Park, Y, Prestegard, J.H.
Deposit date:2015-06-16
Release date:2016-01-13
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Nuclear Magnetic Resonance Insight into the Multiple Glycosaminoglycan Binding Modes of the Link Module from Human TSG-6.
Biochemistry, 55, 2016
4F15
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BU of 4f15 by Molmil
Molecular basis of infectivity of 2009 pandemic H1N1 influenza A viruses
Descriptor: Fab fragment, heavy chain, light chain, ...
Authors:Kim, K.H, Cho, K.J, Lee, J.H, Park, Y.H, Khan, T.G, Lee, J.Y, Kang, S.H, Alam, I.
Deposit date:2012-05-06
Release date:2013-05-15
Last modified:2017-11-15
Method:X-RAY DIFFRACTION (2.81 Å)
Cite:Molecular basis of infectivity of 2009 pandemic H1N1 influenza A viruses
To be Published

221051

數據於2024-06-12公開中

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