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PDB: 497 results

3BD4
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Crystal structure of single domain VL of an anti-DNA binding antibody 3D8 scFv and its active site revealed by complex structures of a small molecule and metals
Descriptor: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, CADMIUM ION, catalytic antibody
Authors:Park, S.K, Kim, J.S.
Deposit date:2007-11-14
Release date:2008-04-01
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal structure of single-domain VL of an anti-DNA binding antibody 3D8 scFv and its active site revealed by complex structures of a small molecule and metals
Proteins, 71, 2008
3BD5
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Crystal structure of single domain VL of an anti-DNA binding antibody 3D8 scFv and its active site revealed by complex structures of a small molecule and metals
Descriptor: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, COBALT (II) ION, catalytic antibody
Authors:Park, S.K, Kim, J.S.
Deposit date:2007-11-14
Release date:2008-04-01
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of single-domain VL of an anti-DNA binding antibody 3D8 scFv and its active site revealed by complex structures of a small molecule and metals
Proteins, 71, 2008
3BD3
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BU of 3bd3 by Molmil
Crystal structure of single domain VL of an anti-DNA binding antibody 3D8 scFv and its active site revealed by complex structures of a small molecule and metals
Descriptor: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, catalytic antibody
Authors:Park, S.K, Kim, J.S.
Deposit date:2007-11-14
Release date:2008-04-01
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal structure of single-domain VL of an anti-DNA binding antibody 3D8 scFv and its active site revealed by complex structures of a small molecule and metals
Proteins, 71, 2008
4FVC
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BU of 4fvc by Molmil
HmoB structure with heme
Descriptor: PROTOPORPHYRIN IX CONTAINING FE, Putative uncharacterized protein yhgC
Authors:Park, S.
Deposit date:2012-06-29
Release date:2013-07-03
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Crystal structure of HmoB with Heme
To be Published
3H1T
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BU of 3h1t by Molmil
The fragment structure of a putative HsdR subunit of a type I restriction enzyme from Vibrio vulnificus YJ016
Descriptor: Type I site-specific restriction-modification system, R (Restriction) subunit
Authors:Park, S.Y, Lee, H.J, Kim, J.S.
Deposit date:2009-04-13
Release date:2009-10-20
Last modified:2019-11-06
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:The fragment structure of a putative HsdR subunit of a type I restriction enzyme from Vibrio vulnificus YJ016: implications for DNA restriction and translocation activity
Nucleic Acids Res., 2009
1ZC1
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BU of 1zc1 by Molmil
Ufd1 exhibits the AAA-ATPase fold with two distinct ubiquitin interaction sites
Descriptor: Ubiquitin fusion degradation protein 1
Authors:Park, S, Isaacson, R, Kim, H.T, Silver, P.A, Wagner, G.
Deposit date:2005-04-10
Release date:2005-07-26
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Ufd1 Exhibits the AAA-ATPase Fold with Two Distinct Ubiquitin Interaction Sites
Structure, 13, 2005
2JPX
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BU of 2jpx by Molmil
A18H Vpu TM structure in lipid bilayers
Descriptor: Vpu protein
Authors:Park, S, Opella, S.J.
Deposit date:2007-05-25
Release date:2007-11-13
Last modified:2023-12-20
Method:SOLUTION NMR
Cite:Conformational changes induced by a single amino acid substitution in the trans-membrane domain of Vpu: implications for HIV-1 susceptibility to channel blocking drugs
Protein Sci., 16, 2007
3BF7
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BU of 3bf7 by Molmil
1.1 resolution structure of ybfF, a new esterase from Escherichia coli: a unique substrate-binding crevice generated by domain arrangement
Descriptor: Esterase YbfF
Authors:Park, S.K, Kim, J.S.
Deposit date:2007-11-21
Release date:2008-01-15
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.1 Å)
Cite:High-resolution structure of ybfF from Escherichia coli K12: a unique substrate-binding crevice generated by domain arrangement
J.Mol.Biol., 376, 2008
3BF8
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1.1 resolution structure of ybfF, a new esterase from Escherichia coli: a unique substrate-binding crevice generated by domain arrangement
Descriptor: Esterase YbfF, MALONIC ACID
Authors:Park, S.K, Kim, J.S.
Deposit date:2007-11-21
Release date:2008-01-15
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.68 Å)
Cite:High-resolution structure of ybfF from Escherichia coli K12: a unique substrate-binding crevice generated by domain arrangement
J.Mol.Biol., 376, 2008
2KSJ
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BU of 2ksj by Molmil
Structure and Dynamics of the Membrane-bound form of Pf1 Coat Protein: Implications for Structural Rearrangement During Virus Assembly
Descriptor: Capsid protein G8P
Authors:Park, S, Marassi, F, Black, D, Opella, S.J.
Deposit date:2010-01-05
Release date:2010-11-10
Last modified:2024-05-01
Method:SOLID-STATE NMR, SOLUTION NMR
Cite:Structure and dynamics of the membrane-bound form of Pf1 coat protein: implications of structural rearrangement for virus assembly.
Biophys.J., 99, 2010
1IO8
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BU of 1io8 by Molmil
Thermophilic cytochrome P450 (CYP119) from sulfolobus solfataricus: High resolution structural origin of its thermostability and functional properties
Descriptor: CYTOCHROME P450 CYP119, PROTOPORPHYRIN IX CONTAINING FE
Authors:Park, S.-Y, Yamane, K, Adachi, S, Shiro, Y, Sligar, S.G, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2001-02-08
Release date:2001-03-07
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2 Å)
Cite:Thermophilic cytochrome P450 (CYP119) from Sulfolobus solfataricus: high resolution structure and functional properties
J.Inorg.Biochem., 91, 2002
1IO9
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THERMOPHILIC CYTOCHROME P450 (CYP119) FROM SULFOLOBUS SOLFATARICUS: HIGH RESOLUTION STRUCTURAL ORIGIN OF ITS THERMOSTABILITY AND FUNCTIONAL PROPERTIES
Descriptor: CYTOCHROME P450 CYP119, PROTOPORPHYRIN IX CONTAINING FE
Authors:Park, S.-Y, Yamane, K, Adachi, S, Shiro, Y, Sligar, S.G, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2001-02-08
Release date:2001-03-07
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Thermophilic cytochrome P450 (CYP119) from Sulfolobus solfataricus: high resolution structure and functional properties.
J.Inorg.Biochem., 91, 2002
7MBM
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BU of 7mbm by Molmil
Cryo-EM structure of MLL1-NCP (H3K4M) complex, mode01
Descriptor: DNA (145-MER), Histone H2A, Histone H2B 1.1, ...
Authors:Park, S.H, Ayoub, A, Lee, Y.T, Dou, Y, Cho, U.
Deposit date:2021-04-01
Release date:2021-12-29
Last modified:2024-05-29
Method:ELECTRON MICROSCOPY
Cite:Regulation of MLL1 Methyltransferase Activity in Two Distinct Nucleosome Binding Modes.
Biochemistry, 61, 2022
7MBN
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BU of 7mbn by Molmil
Cryo-EM structure of MLL1-NCP (H3K4M) complex, mode02
Descriptor: DNA (146-MER), Histone H2A, Histone H2B 1.1, ...
Authors:Park, S.H, Ayoub, A, Lee, Y.T, Dou, Y, Cho, U.
Deposit date:2021-04-01
Release date:2021-12-29
Last modified:2024-05-29
Method:ELECTRON MICROSCOPY
Cite:Regulation of MLL1 Methyltransferase Activity in Two Distinct Nucleosome Binding Modes.
Biochemistry, 61, 2022
1IO7
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BU of 1io7 by Molmil
THERMOPHILIC CYTOCHROME P450 (CYP119) FROM SULFOLOBUS SOLFATARICUS: HIGH RESOLUTION STRUCTURAL ORIGIN OF ITS THERMOSTABILITY AND FUNCTIONAL PROPERTIES
Descriptor: CYTOCHROME P450 CYP119, PROTOPORPHYRIN IX CONTAINING FE
Authors:Park, S.-Y, Yamane, K, Adachi, S, Shiro, Y, Sligar, S.G, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2001-02-08
Release date:2001-02-28
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Thermophilic cytochrome P450 (CYP119) from Sulfolobus solfataricus: high resolution structure and functional properties.
J.Inorg.Biochem., 91, 2002
3WX7
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BU of 3wx7 by Molmil
Crystal structure of COD
Descriptor: ACETATE ION, CALCIUM ION, Chitin oligosaccharide deacetylase, ...
Authors:Park, S.-Y, Sugiyama, K, Hirano, T, Nishio, T.
Deposit date:2014-07-18
Release date:2014-12-03
Last modified:2019-04-03
Method:X-RAY DIFFRACTION (1.349 Å)
Cite:Structure-based analysis of domain function of chitin oligosaccharide deacetylase from Vibrio parahaemolyticus.
FEBS Lett., 589, 2015
5J2O
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BU of 5j2o by Molmil
Crystal structure of the cyan fluorescence protein Cerulean S175G mutant
Descriptor: Green fluorescent protein
Authors:Park, S.-W, Kang, S, Yoon, T.-S.
Deposit date:2016-03-29
Release date:2016-04-13
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Crystal structure of the cyan fluorescent protein Cerulean-S175G
Acta Crystallogr.,Sect.F, 72, 2016
3OZQ
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BU of 3ozq by Molmil
Crystal structure of Serpin48, which is a highly specific serpin in the insect Tenebrio molitor
Descriptor: Serpin48
Authors:Park, S.H, Piao, S, Ha, N.-C.
Deposit date:2010-09-27
Release date:2010-10-27
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural and functional characterization of a highly specific serpin in the insect innate immunity
J.Biol.Chem., 286, 2011
6JL9
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BU of 6jl9 by Molmil
Crystal structure of a frog ependymin related protein
Descriptor: CALCIUM ION, Ependymin-related 1
Authors:Park, S.Y.
Deposit date:2019-03-04
Release date:2019-07-10
Last modified:2019-07-31
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structures of three ependymin-related proteins suggest their function as a hydrophobic molecule binder.
Iucrj, 6, 2019
6JLD
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BU of 6jld by Molmil
Crystal structure of a human ependymin related protein
Descriptor: Mammalian ependymin-related protein 1
Authors:Park, S.Y.
Deposit date:2019-03-05
Release date:2019-07-10
Last modified:2019-07-31
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structures of three ependymin-related proteins suggest their function as a hydrophobic molecule binder.
Iucrj, 6, 2019
7E8N
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BU of 7e8n by Molmil
Crystal structure of Type II citrate synthase (HyCS) from Hymenobacter sp. PAMC 26554
Descriptor: CITRIC ACID, Citrate synthase
Authors:Park, S.-H, Lee, C.W, Bae, D.-W, Lee, J.H.
Deposit date:2021-03-02
Release date:2022-01-12
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural basis of the cooperative activation of type II citrate synthase (HyCS) from Hymenobacter sp. PAMC 26554.
Int.J.Biol.Macromol., 183, 2021
1XKR
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BU of 1xkr by Molmil
X-ray Structure of Thermotoga maritima CheC
Descriptor: chemotaxis protein CheC
Authors:Park, S.Y, Chao, X, Gonzalez-Bonet, G, Beel, B.D, Bilwes, A.M, Crane, B.R.
Deposit date:2004-09-29
Release date:2004-12-07
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Structure and Function of an Unusual Family of Protein Phosphatases; The Bacterial Chemotaxis Proteins CheC and CheX
Mol.Cell, 16, 2004
2LNL
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BU of 2lnl by Molmil
Structure of human CXCR1 in phospholipid bilayers
Descriptor: C-X-C chemokine receptor type 1
Authors:Park, S, Das, B.B, Casagrande, F, Nothnagel, H, Chu, M, Kiefer, H, Maier, K, De Angelis, A, Marassi, F.M, Opella, S.J.
Deposit date:2011-12-31
Release date:2012-10-17
Last modified:2016-04-27
Method:SOLID-STATE NMR
Cite:Structure of the chemokine receptor CXCR1 in phospholipid bilayers.
Nature, 491, 2012
1PI7
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BU of 1pi7 by Molmil
Structure of the channel-forming trans-membrane domain of Virus protein "u" (Vpu) from HIV-1
Descriptor: VPU protein
Authors:Park, S.H, Mrse, A.A, Nevzorov, A.A, Mesleh, M.F, Oblatt-Montal, M, Montal, M, Opella, S.J.
Deposit date:2003-05-29
Release date:2003-11-11
Last modified:2024-05-22
Method:SOLID-STATE NMR
Cite:Three-dimensional structure of the channel-forming trans-membrane domain of virus protein "u" (Vpu) from HIV-1
J.Mol.Biol., 333, 2003
1PI8
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BU of 1pi8 by Molmil
Structure of the channel-forming trans-membrane domain of Virus protein "u" (Vpu) from HIV-1
Descriptor: VPU protein
Authors:Park, S.H, Mrse, A.A, Nevzorov, A.A, Mesleh, M.F, Oblatt-Montal, M, Montal, M, Opella, S.J.
Deposit date:2003-05-29
Release date:2003-11-11
Last modified:2024-05-22
Method:SOLID-STATE NMR
Cite:Three-dimensional structure of the channel-forming trans-membrane domain of virus protein "u" (Vpu) from HIV-1
J.Mol.Biol., 333, 2003

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