3BD4

Crystal structure of single domain VL of an anti-DNA binding antibody 3D8 scFv and its active site revealed by complex structures of a small molecule and metals

Summary for 3BD4

Related3BD3 3BD5
Descriptorcatalytic antibody, CADMIUM ION, 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ... (4 entities in total)
Functional Keywordsbeta sandwich, immune system
Biological sourceMus musculus (house mouse)
Total number of polymer chains2
Total molecular weight25354.09
Authors
Park, S.K.,Kim, J.S. (deposition date: 2007-11-14, release date: 2008-04-01, Last modification date: 2011-07-13)
Primary citation
Park, S.Y.,Lee, W.R.,Lee, S.C.,Kwon, M.H.,Kim, Y.S.,Kim, J.S.
Crystal structure of single-domain VL of an anti-DNA binding antibody 3D8 scFv and its active site revealed by complex structures of a small molecule and metals
Proteins, 71:2091-2096, 2008
PubMed: 18338383 (PDB entries with the same primary citation)
DOI: 10.1002/prot.22011
MImport into Mendeley
Experimental method
X-RAY DIFFRACTION (2.4 Å)
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Structure validation

RfreeClashscoreRamachandran outliersSidechain outliersRSRZ outliers0.280190.5%3.6%4.1%MetricValuePercentile RanksWorseBetterPercentile relative to all X-ray structuresPercentile relative to X-ray structures of similar resolution

More Asymmetric unit images

Molmil generated image of 3bd4
no rotation
Molmil generated image of 3bd4
rotated about x axis by 90°
Molmil generated image of 3bd4
rotated about y axis by 90°