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PDB: 497 件

2GX0
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Crystal structural and functional analysis of GFP-like fluorescent protein
分子名称: fluorescent protein Dronpa
著者Hwang, K.Y, Nam, K.-H, Park, S.-Y, Sugiyama, K.
登録日2006-05-08
公開日2007-05-08
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Structural characterization of the photoswitchable fluorescent protein Dronpa-C62S
Biochem.Biophys.Res.Commun., 354, 2007
1IWK
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Putidaredoxin-Binding Stablilizes an Active Conformer of Cytochrome P450cam in its Reduced State; Crystal Structure of Mutant(112K) Cytochrome P450cam
分子名称: CYTOCHROME P450-CAM, PROTOPORPHYRIN IX CONTAINING FE
著者Nagano, S, Shimada, H, Tarumi, A, Hishiki, T, Kimata-Ariga, Y, Egawa, T, Park, S.-Y, Adachi, S, Shiro, Y, Ishimura, Y, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2002-05-15
公開日2002-06-05
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Infrared spectroscopic and mutational studies on putidaredoxin-induced conformational changes in ferrous CO-P450cam
Biochemistry, 42, 2003
2ZNL
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Crystal structure of PA-PB1 complex form influenza virus RNA polymerase
分子名称: Polymerase acidic protein, RNA-directed RNA polymerase catalytic subunit
著者Obayashi, E, Yoshida, H, Kawai, F, Shibayama, N, Kawaguchi, A, Nagata, K, Tame, J.R.H, Park, S.-Y.
登録日2008-04-28
公開日2008-09-02
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献The structural basis for an essential subunit interaction in influenza virus RNA polymerase
Nature, 454, 2008
7W1F
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Crystal structure of the dNTP triphosphohydrolase PA1124 from Pseudomonas aeruginosa
分子名称: NICKEL (II) ION, Probable deoxyguanosinetriphosphate triphosphohydrolase
著者Oh, H.B, Song, W.S, Lee, K.C, Park, S.C, Yoon, S.I.
登録日2021-11-19
公開日2022-03-23
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献Structural analysis of the dNTP triphosphohydrolase PA1124 from Pseudomonas aeruginosa.
Biochem.Biophys.Res.Commun., 589, 2022
7WJ5
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Cryo-EM structure of human somatostatin receptor 2 complex with its agonist somatostatin delineates the ligand binding specificity
分子名称: Gai1 antibody (scfv16), Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1, ...
著者Heo, Y.S, Yoon, E.J, Jeon, Y.E, Yun, J.-H, Ishimoto, N, Woo, H, Park, S.Y, Song, J, Lee, W.T.
登録日2022-01-05
公開日2022-07-13
実験手法ELECTRON MICROSCOPY (3.72 Å)
主引用文献Cryo-EM structure of the human somatostatin receptor 2 complex with its agonist somatostatin delineates the ligand-binding specificity.
Elife, 11, 2022
3AN2
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The structure of the centromeric nucleosome containing CENP-A
分子名称: 147 mer DNA, Histone H2A type 1-B/E, Histone H2B type 1-J, ...
著者Tachiwana, H, Kagawa, W, Shiga, T, Saito, K, Osakabe, A, Hayashi-Takanaka, Y, Park, S.-Y, Kimura, H, Kurumizaka, H.
登録日2010-08-27
公開日2011-07-20
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (3.6 Å)
主引用文献Crystal structure of the human centromeric nucleosome containing CENP-A
Nature, 476, 2011
2EXS
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TRAP3 (engineered TRAP)
分子名称: TRYPTOPHAN, Transcription attenuation protein mtrB
著者Heddle, J.G, Yokoyama, T, Yamashita, I, Park, S.Y, Tame, J.R.H.
登録日2005-11-08
公開日2006-08-01
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Rounding up: Engineering 12-Membered Rings from the Cyclic 11-Mer TRAP
Structure, 14, 2006
2EXT
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TRAP4 (engineered TRAP)
分子名称: TRYPTOPHAN, Transcription attenuation protein mtrB
著者Heddle, J.G, Yokoyama, T, Yamashita, I, Park, S.Y, Tame, J.R.H.
登録日2005-11-08
公開日2006-08-01
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Rounding up: Engineering 12-Membered Rings from the Cyclic 11-Mer TRAP
Structure, 14, 2006
1VCF
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Crystal Structure of IPP isomerase at I422
分子名称: CADMIUM ION, FLAVIN MONONUCLEOTIDE, isopentenyl-diphosphate delta-isomerase
著者Wada, T, Park, S.-Y, Tame, R.H, Kuramitsu, S, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2004-03-08
公開日2005-04-19
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Crystal Structure of IPP isomerase at I422
To be Published
1VCG
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Crystal Structure of IPP isomerase at P43212
分子名称: FLAVIN MONONUCLEOTIDE, isopentenyl-diphosphate delta-isomerase
著者Wada, T, Park, S.-Y, Tame, R.H, Kuramitsu, S, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2004-03-08
公開日2005-04-19
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (3.02 Å)
主引用文献Crystal Structure of IPP isomerase at P43212
To be Published
7VGW
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Yeast gid10 with Pro-peptide
分子名称: BJ4_G0041530.mRNA.1.CDS.1
著者Shin, J.S, Park, S.H, Kim, L, Heo, J, Song, H.K.
登録日2021-09-19
公開日2022-07-27
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Crystal structure of yeast Gid10 in complex with Pro/N-degron.
Biochem.Biophys.Res.Commun., 582, 2021
5GSE
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Crystal structure of unusual nucleosome
分子名称: DNA (250-MER), Histone H2A type 1-B/E, Histone H2B type 1-J, ...
著者Kato, D, Osakabe, A, Arimura, Y, Park, S.Y, Kurumizaka, H.
登録日2016-08-16
公開日2017-05-03
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (3.14 Å)
主引用文献Crystal structure of the overlapping dinucleosome composed of hexasome and octasome
Science, 356, 2017
1WUB
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Crystal structure of the polyisoprenoid-binding protein, TT1927b, from Thermus thermophilus HB8
分子名称: (2E,6E,10E,14E,18E,22E,26E)-3,7,11,15,19,23,27,31-OCTAMETHYLDOTRIACONTA-2,6,10,14,18,22,26,30-OCTAENYL TRIHYDROGEN DIPHOSPHATE, conserved hypothetical protein TT1927b
著者Handa, N, Idaka, M, Terada, T, Hamana, H, Ishizuka, Y, Park, S.-Y, Tame, J.R.H, Doi-Katayama, Y, Hirota, H, Kuramitsu, S, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2004-12-03
公開日2004-12-21
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.65 Å)
主引用文献Crystal structure of a novel polyisoprenoid-binding protein from Thermus thermophilus HB8
Protein Sci., 14, 2005
5U6L
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Solution structure of the zinc fingers 3 and 4 of MBNL1
分子名称: Muscleblind-like protein 1, ZINC ION
著者Phukan, P.D, Park, S, Martinez-Yamout, M.M, Zeeb, M, Dyson, H.J, Wright, P.E.
登録日2016-12-08
公開日2017-08-02
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Structural Basis for Interaction of the Tandem Zinc Finger Domains of Human Muscleblind with Cognate RNA from Human Cardiac Troponin T.
Biochemistry, 56, 2017
5U6H
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Solution structure of the zinc fingers 1 and 2 of MBNL1
分子名称: Muscleblind-like protein 1, ZINC ION
著者Phukan, P.D, Park, S, Martinez-Yamout, M.M, Zeeb, M, Dyson, H.J, Wright, P.E.
登録日2016-12-08
公開日2017-08-02
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Structural Basis for Interaction of the Tandem Zinc Finger Domains of Human Muscleblind with Cognate RNA from Human Cardiac Troponin T.
Biochemistry, 56, 2017
5U9B
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Solution structure of the zinc fingers 1 and 2 of MBNL1 in complex with human cardiac troponin T pre-mRNA
分子名称: Muscleblind-like protein 1, RNA (5'-R(P*GP*UP*CP*UP*CP*GP*CP*UP*UP*UP*UP*CP*CP*CP*C)-3'), ZINC ION
著者Phukan, P.D, Park, S, Martinez-Yamout, M.M, Zeeb, M, Dyson, H.J, Wright, P.E.
登録日2016-12-15
公開日2017-08-02
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Structural Basis for Interaction of the Tandem Zinc Finger Domains of Human Muscleblind with Cognate RNA from Human Cardiac Troponin T.
Biochemistry, 56, 2017
1ZHC
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Solution structure of HP1242 from Helicobacter pylori
分子名称: hypothetical protein HP1242
著者Kang, S.J, Park, S.J, Jung, S.J, Lee, B.J.
登録日2005-04-25
公開日2005-12-06
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献Solution structure of HP1242 from Helicobacter pylori
Proteins, 61, 2005
3S65
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Structures and oxygen affinities of crystalline human hemoglobin C (beta6 Lys) in the R2 quaternary structures
分子名称: CARBON MONOXIDE, Hemoglobin subunit alpha, Hemoglobin subunit beta, ...
著者Shibayama, N, Sugiyama, K, Park, S.Y.
登録日2011-05-25
公開日2011-08-03
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Structures and oxygen affinities of crystalline human hemoglobin C (beta6 Glu->Lys) in the R and R2 quaternary structure
To be Published
3S66
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Structures and oxygen affinities of crystalline human hemoglobin C (beta6 Lys) in the R quaternary structures
分子名称: CARBON MONOXIDE, Hemoglobin subunit alpha, Hemoglobin subunit beta, ...
著者Shibayama, N, Sugiyama, K, Park, S.Y.
登録日2011-05-25
公開日2011-08-03
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.401 Å)
主引用文献Structures and oxygen affinities of crystalline human hemoglobin C (beta6 Glu->Lys) in the R and R2 quaternary structure
To be Published
1Z8M
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Solution structure of the conserved hypothtical protein HP0894 from Helicobacter pylori
分子名称: conserved hypothetical protein HP0894
著者Han, K.D, Park, S.J, Jang, S.B, Lee, B.J.
登録日2005-03-30
公開日2005-11-01
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献Solution structure of conserved hypothetical protein HP0894 from Helicobacter pylori
Proteins, 61, 2005
1J7N
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Anthrax Toxin Lethal factor
分子名称: Lethal Factor precursor, SULFATE ION, ZINC ION
著者Pannifer, A.D, Wong, T.Y, Schwarzenbacher, R, Renatus, M, Petosa, C, Collier, R.J, Bienkowska, J, Lacy, D.B, Park, S, Leppla, S.H, Hanna, P, Liddington, R.C.
登録日2001-05-17
公開日2001-11-07
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Crystal structure of the anthrax lethal factor.
Nature, 414, 2001
2H9Z
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Solution structure of hypothetical protein, HP0495 from Helicobacter pylori
分子名称: Hypothetical protein HP0495
著者Seo, M.D, Park, S.J, Kim, H.J, Lee, B.J.
登録日2006-06-12
公開日2007-05-01
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献Solution structure of hypothetical protein, HP0495 (Y495_HELPY) from Helicobacter pylori.
Proteins, 67, 2007
1V9K
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The crystal structure of the catalytic domain of pseudouridine synthase RluC from Escherichia coli
分子名称: Ribosomal large subunit pseudouridine synthase C, SULFATE ION
著者Machida, Y, Mizutani, K, Unzai, S, Park, S.-Y, Tame, J.R.H.
登録日2004-01-26
公開日2004-05-18
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Crystal structures of the catalytic domains of pseudouridine synthases RluC and RluD from Escherichia coli
Biochemistry, 43, 2004
2HP7
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Structure of FliM provides insight into assembly of the switch complex in the bacterial flagella motor
分子名称: Flagellar motor switch protein FliM
著者Crane, B.R, Park, S, Lowder, B, Bilwes, A.M, Blair, D.F.
登録日2006-07-17
公開日2006-08-08
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Structure of FliM provides insight into assembly of the switch complex in the bacterial flagella motor.
Proc.Natl.Acad.Sci.Usa, 103, 2006
6JYA
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Structure of dark-state marine bacterial chloride importer, NM-R3, with CW laser (ND-10%) at 95K.
分子名称: CHLORIDE ION, Chloride pumping rhodopsin, OLEIC ACID, ...
著者Yun, J.H, Ohki, M, Park, S.Y, Lee, W.
登録日2019-04-26
公開日2020-03-04
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.803 Å)
主引用文献Pumping mechanism of NM-R3, a light-driven bacterial chloride importer in the rhodopsin family.
Sci Adv, 6, 2020

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